FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0466, 335 aa
  1>>>pF1KE0466 335 - 335 aa - 335 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3568+/-0.000778; mu= 15.4180+/- 0.047
 mean_var=63.9948+/-12.693, 0's: 0 Z-trim(107.4): 17  B-trim: 0 in 0/54
 Lambda= 0.160325
 statistics sampled from 9537 (9544) to 9537 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.676), E-opt: 0.2 (0.293), width:  16
 Scan time:  2.660

The best scores are:                                      opt bits E(32554)
CCDS1525.1 MARC2 gene_id:54996|Hs108|chr1          ( 335) 2276 535.0 3.1e-152
CCDS81425.1 MARC2 gene_id:54996|Hs108|chr1         ( 257) 1701 402.0 2.7e-112
CCDS1526.1 MARC1 gene_id:64757|Hs108|chr1          ( 337) 1530 362.5 2.8e-100


>>CCDS1525.1 MARC2 gene_id:54996|Hs108|chr1               (335 aa)
 initn: 2276 init1: 2276 opt: 2276  Z-score: 2846.5  bits: 535.0 E(32554): 3.1e-152
Smith-Waterman score: 2276; 99.7% identity (100.0% similar) in 335 aa overlap (1-335:1-335)

               10        20        30        40        50        60
pF1KE0 MGASSSSALARLGLPARPWPRWLGVAALGLAAVALGTVAWRRAWPRRRRRLQQVGTVAKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 MGASSSSALARLGLPARPWPRWLGVAALGLAAVALGTVAWRRAWPRRRRRLQQVGTVAKL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 WIYPVKSCKGVPVSEAECTAMGLRSGNLRDRFWLVIKEDGHMVTARQEPRLVLISIIYEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 WIYPVKSCKGVPVSEAECTAMGLRSGNLRDRFWLVIKEDGHMVTARQEPRLVLISIIYEN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 NCLIFRAPDMDQLVLPSKQPSSNKLHNCRIFGLDIKGRDCGNEAAKWFANFLKTEAYRLV
       ::::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::
CCDS15 NCLIFRAPDMDQLVLPSKQPSSNKLHNCRIFGLDIKGRDCGNEAAKWFTNFLKTEAYRLV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 QFETNMKGRTSRKLLPTLDQNFQVAYPDYCPLLIMTDASLVDLNTRMEKKMKMENFRPNI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 QFETNMKGRTSRKLLPTLDQNFQVAYPDYCPLLIMTDASLVDLNTRMEKKMKMENFRPNI
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 VVTGCDAFEEDTWDELLIGSVEVKKVMACPRCILTTVDPDTGVIDRKQPLDTLKSYRLCD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 VVTGCDAFEEDTWDELLIGSVEVKKVMACPRCILTTVDPDTGVIDRKQPLDTLKSYRLCD
              250       260       270       280       290       300

              310       320       330     
pF1KE0 PSERELYKLSPLFGIYYSVEKIGSLRVGDPVYRMV
       :::::::::::::::::::::::::::::::::::
CCDS15 PSERELYKLSPLFGIYYSVEKIGSLRVGDPVYRMV
              310       320       330     

>>CCDS81425.1 MARC2 gene_id:54996|Hs108|chr1              (257 aa)
 initn: 1701 init1: 1701 opt: 1701  Z-score: 2129.5  bits: 402.0 E(32554): 2.7e-112
Smith-Waterman score: 1701; 99.6% identity (100.0% similar) in 250 aa overlap (1-250:1-250)

               10        20        30        40        50        60
pF1KE0 MGASSSSALARLGLPARPWPRWLGVAALGLAAVALGTVAWRRAWPRRRRRLQQVGTVAKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 MGASSSSALARLGLPARPWPRWLGVAALGLAAVALGTVAWRRAWPRRRRRLQQVGTVAKL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 WIYPVKSCKGVPVSEAECTAMGLRSGNLRDRFWLVIKEDGHMVTARQEPRLVLISIIYEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 WIYPVKSCKGVPVSEAECTAMGLRSGNLRDRFWLVIKEDGHMVTARQEPRLVLISIIYEN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 NCLIFRAPDMDQLVLPSKQPSSNKLHNCRIFGLDIKGRDCGNEAAKWFANFLKTEAYRLV
       ::::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::
CCDS81 NCLIFRAPDMDQLVLPSKQPSSNKLHNCRIFGLDIKGRDCGNEAAKWFTNFLKTEAYRLV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 QFETNMKGRTSRKLLPTLDQNFQVAYPDYCPLLIMTDASLVDLNTRMEKKMKMENFRPNI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 QFETNMKGRTSRKLLPTLDQNFQVAYPDYCPLLIMTDASLVDLNTRMEKKMKMENFRPNI
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 VVTGCDAFEEDTWDELLIGSVEVKKVMACPRCILTTVDPDTGVIDRKQPLDTLKSYRLCD
       ::::::::::                                                  
CCDS81 VVTGCDAFEEASATRRD                                           
              250                                                  

>>CCDS1526.1 MARC1 gene_id:64757|Hs108|chr1               (337 aa)
 initn: 1322 init1: 1322 opt: 1530  Z-score: 1913.9  bits: 362.5 E(32554): 2.8e-100
Smith-Waterman score: 1530; 65.8% identity (86.5% similar) in 333 aa overlap (1-332:1-333)

               10        20        30        40        50          
pF1KE0 MGASSSSALARLGLPARPWPRWLGVAALGLAAVALGTVAWRRAWPRRRRRL-QQVGTVAK
       :::..::::::. : :.  : :::::::::.:::::.:::::::: ::::: :::::::.
CCDS15 MGAAGSSALARFVLLAQSRPGWLGVAALGLTAVALGAVAWRRAWPTRRRRLLQQVGTVAQ
               10        20        30        40        50        60

      60        70        80        90       100       110         
pF1KE0 LWIYPVKSCKGVPVSEAECTAMGLRSGNLRDRFWLVIKEDGHMVTARQEPRLVLISIIYE
       :::::::::::::::::::::::::::::::::::::...:.::::::::::::::.  .
CCDS15 LWIYPVKSCKGVPVSEAECTAMGLRSGNLRDRFWLVINQEGNMVTARQEPRLVLISLTCD
               70        80        90       100       110       120

     120       130       140       150       160       170         
pF1KE0 NNCLIFRAPDMDQLVLPSKQPSSNKLHNCRIFGLDIKGRDCGNEAAKWFANFLKTEAYRL
       .. : . :    .:.:: : :..: .:.::. ::.:.:::::. .:.:...:::.. :::
CCDS15 GDTLTLSAAYTKDLLLPIKTPTTNAVHKCRVHGLEIEGRDCGEATAQWITSFLKSQPYRL
              130       140       150       160       170       180

     180       190       200       210       220       230         
pF1KE0 VQFETNMKGRTSRKLLPTLDQNFQVAYPDYCPLLIMTDASLVDLNTRMEKKMKMENFRPN
       :.:: .:. :  ...   .  . :.:: :  :.::...:::.:::.:.:::.:  :::::
CCDS15 VHFEPHMRPRRPHQIADLFRPKDQIAYSDTSPFLILSEASLADLNSRLEKKVKATNFRPN
              190       200       210       220       230       240

     240       250       260       270       280       290         
pF1KE0 IVVTGCDAFEEDTWDELLIGSVEVKKVMACPRCILTTVDPDTGVIDRKQPLDTLKSYRLC
       ::..:::.. ::.:::::::.::.:.:::: :::::::::::::..::.::.:::::: :
CCDS15 IVISGCDVYAEDSWDELLIGDVELKRVMACSRCILTTVDPDTGVMSRKEPLETLKSYRQC
              250       260       270       280       290       300

     300       310       320       330      
pF1KE0 DPSERELYKLSPLFGIYYSVEKIGSLRVGDPVYRMV 
       :::::.::  ::::: :. .:. :...::::::    
CCDS15 DPSERKLYGKSPLFGQYFVLENPGTIKVGDPVYLLGQ
              310       320       330       




335 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 03:45:05 2016 done: Mon Nov  7 03:45:06 2016
 Total Scan time:  2.660 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]