FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0453, 227 aa
  1>>>pF1KE0453 227 - 227 aa - 227 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1028+/-0.000657; mu= 15.0213+/- 0.040
 mean_var=60.6504+/-12.095, 0's: 0 Z-trim(110.0): 9  B-trim: 101 in 1/48
 Lambda= 0.164686
 statistics sampled from 11310 (11315) to 11310 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.733), E-opt: 0.2 (0.348), width:  16
 Scan time:  2.260

The best scores are:                                      opt bits E(32554)
CCDS10760.1 NUDT21 gene_id:11051|Hs108|chr16       ( 227) 1542 374.2 3.7e-104


>>CCDS10760.1 NUDT21 gene_id:11051|Hs108|chr16            (227 aa)
 initn: 1542 init1: 1542 opt: 1542  Z-score: 1983.4  bits: 374.2 E(32554): 3.7e-104
Smith-Waterman score: 1542; 99.1% identity (99.6% similar) in 227 aa overlap (1-227:1-227)

               10        20        30        40        50        60
pF1KE0 MSVVPPNRSQTGWPRGVTQFGNKYIQQTKPLTLERTINLYPLTNYTFGTKEPLYEKDSSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MSVVPPNRSQTGWPRGVTQFGNKYIQQTKPLTLERTINLYPLTNYTFGTKEPLYEKDSSV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 AARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLLLQLGTTFFKLPGGELDPGEDEVEG
       :::::::::::::::::::::::::::::::::::::::::::::::::::.::::::::
CCDS10 AARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLLLQLGTTFFKLPGGELNPGEDEVEG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 LKRLMTEILGRQDGVLQDWVIDDCIGNWWRPNFEPPQYPYIPAHITKPKEHKKLFLVQLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LKRLMTEILGRQDGVLQDWVIDDCIGNWWRPNFEPPQYPYIPAHITKPKEHKKLFLVQLQ
              130       140       150       160       170       180

              190       200       210       220       
pF1KE0 EKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSLPQPLSRFNFIYN
       ::::::::::::::::::::::::::::::::::::: :::::::::
CCDS10 EKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSLPQLLSRFNFIYN
              190       200       210       220       




227 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 03:44:28 2016 done: Mon Nov  7 03:44:29 2016
 Total Scan time:  2.260 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]