FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0296, 321 aa
  1>>>pF1KE0296 321 - 321 aa - 321 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3468+/-0.000355; mu= 16.5690+/- 0.022
 mean_var=84.1445+/-16.973, 0's: 0 Z-trim(115.8): 9  B-trim: 140 in 1/50
 Lambda= 0.139817
 statistics sampled from 26553 (26562) to 26553 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.683), E-opt: 0.2 (0.311), width:  16
 Scan time:  7.070

The best scores are:                                      opt bits E(85289)
NP_001035830 (OMIM: 172280) glycerol-3-phosphate p ( 321) 2133 439.9 3.4e-123
NP_064711 (OMIM: 609246) pyridoxal phosphate phosp ( 296)  519 114.3 3.3e-25


>>NP_001035830 (OMIM: 172280) glycerol-3-phosphate phosp  (321 aa)
 initn: 2133 init1: 2133 opt: 2133  Z-score: 2332.7  bits: 439.9 E(85289): 3.4e-123
Smith-Waterman score: 2133; 100.0% identity (100.0% similar) in 321 aa overlap (1-321:1-321)

               10        20        30        40        50        60
pF1KE0 MAAAEAGGDDARCVRLSAERAQALLADVDTLLFDCDGVLWRGETAVPGAPEALRALRARG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAAAEAGGDDARCVRLSAERAQALLADVDTLLFDCDGVLWRGETAVPGAPEALRALRARG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 KRLGFITNNSSKTRAAYAEKLRRLGFGGPAGPGASLEVFGTAYCTALYLRQRLAGAPAPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KRLGFITNNSSKTRAAYAEKLRRLGFGGPAGPGASLEVFGTAYCTALYLRQRLAGAPAPK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 AYVLGSPALAAELEAVGVASVGVGPEPLQGEGPGDWLHAPLEPDVRAVVVGFDPHFSYMK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AYVLGSPALAAELEAVGVASVGVGPEPLQGEGPGDWLHAPLEPDVRAVVVGFDPHFSYMK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 LTKALRYLQQPGCLLVGTNMDNRLPLENGRFIAGTGCLVRAVEMAAQRQADIIGKPSRFI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LTKALRYLQQPGCLLVGTNMDNRLPLENGRFIAGTGCLVRAVEMAAQRQADIIGKPSRFI
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 FDCVSQEYGINPERTVMVGDRLDTDILLGATCGLKTILTLTGVSTLGDVKNNQESDCVSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FDCVSQEYGINPERTVMVGDRLDTDILLGATCGLKTILTLTGVSTLGDVKNNQESDCVSK
              250       260       270       280       290       300

              310       320 
pF1KE0 KKMVPDFYVDSIADLLPALQG
       :::::::::::::::::::::
NP_001 KKMVPDFYVDSIADLLPALQG
              310       320 

>>NP_064711 (OMIM: 609246) pyridoxal phosphate phosphata  (296 aa)
 initn: 828 init1: 458 opt: 519  Z-score: 573.7  bits: 114.3 E(85289): 3.3e-25
Smith-Waterman score: 864; 46.8% identity (69.2% similar) in 312 aa overlap (11-320:2-295)

               10        20        30        40        50        60
pF1KE0 MAAAEAGGDDARCVRLSAERAQALLADVDTLLFDCDGVLWRGETAVPGAPEALRALRARG
                 ::: :: .   . .:. .. .::::::::: :: ::::::: :. :   :
NP_064          MARCERLRGAALRDVLGRAQGVLFDCDGVLWNGERAVPGAPELLERLARAG
                        10        20        30        40        50 

               70        80        90       100       110          
pF1KE0 KRLGFITNNSSKTRAAYAEKLRRLGFGGPAGPGASLEVFGTAYCTALYLRQRLAGAP-AP
       :   :..::: ..:   : .. ::::::  .     ..:..: :.:  ::::: : : ::
NP_064 KAALFVSNNSRRARPELALRFARLGFGGLRAE----QLFSSALCAARLLRQRLPGPPDAP
              60        70        80            90       100       

     120        130       140       150       160       170        
pF1KE0 KA-YVLGSPALAAELEAVGVASVGVGPEPLQGEGPGDWLHAPLEPDVRAVVVGFDPHFSY
        : .:::. .: :::.:.:.  .:   .:  :.: .        : ::::.::.: :::.
NP_064 GAVFVLGGEGLRAELRAAGLRLAG---DPSAGDGAA--------PRVRAVLVGYDEHFSF
       110       120       130          140               150      

      180       190       200       210       220       230        
pF1KE0 MKLTKALRYLQQPGCLLVGTNMDNRLPLENGRFIAGTGCLVRAVEMAAQRQADIIGKPSR
        :: .:  .:..: ::::.:. :   :: .:    ::: :. ::: :. ::: ..:::: 
NP_064 AKLREACAHLRDPECLLVATDRDPWHPLSDGSRTPGTGSLAAAVETASGRQALVVGKPSP
        160       170       180       190       200       210      

      240       250       260       270       280       290        
pF1KE0 FIFDCVSQEYGINPERTVMVGDRLDTDILLGATCGLKTILTLTGVSTLGDVKNNQESDCV
       ..:.:......:.: ::.::::::.::::.:  ::. :.::::::: :   .. :    .
NP_064 YMFECITENFSIDPARTLMVGDRLETDILFGHRCGMTTVLTLTGVSRL---EEAQAYLAA
        220       230       240       250       260          270   

      300       310       320 
pF1KE0 SKKKMVPDFYVDSIADLLPALQG
       ... .:: .::.:::::  .:. 
NP_064 GQHDLVPHYYVESIADLTEGLED
           280       290      




321 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 04:40:47 2016 done: Mon Nov  7 04:40:48 2016
 Total Scan time:  7.070 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]