FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0296, 321 aa
  1>>>pF1KE0296 321 - 321 aa - 321 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6266+/-0.00076; mu= 14.8211+/- 0.046
 mean_var=81.4626+/-16.517, 0's: 0 Z-trim(109.9): 14  B-trim: 0 in 0/50
 Lambda= 0.142100
 statistics sampled from 11186 (11195) to 11186 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.707), E-opt: 0.2 (0.344), width:  16
 Scan time:  2.670

The best scores are:                                      opt bits E(32554)
CCDS42104.1 PGP gene_id:283871|Hs108|chr16         ( 321) 2133 446.6 1.2e-125
CCDS13953.1 PDXP gene_id:57026|Hs108|chr22         ( 296)  519 115.7 4.6e-26


>>CCDS42104.1 PGP gene_id:283871|Hs108|chr16              (321 aa)
 initn: 2133 init1: 2133 opt: 2133  Z-score: 2369.2  bits: 446.6 E(32554): 1.2e-125
Smith-Waterman score: 2133; 100.0% identity (100.0% similar) in 321 aa overlap (1-321:1-321)

               10        20        30        40        50        60
pF1KE0 MAAAEAGGDDARCVRLSAERAQALLADVDTLLFDCDGVLWRGETAVPGAPEALRALRARG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MAAAEAGGDDARCVRLSAERAQALLADVDTLLFDCDGVLWRGETAVPGAPEALRALRARG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 KRLGFITNNSSKTRAAYAEKLRRLGFGGPAGPGASLEVFGTAYCTALYLRQRLAGAPAPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 KRLGFITNNSSKTRAAYAEKLRRLGFGGPAGPGASLEVFGTAYCTALYLRQRLAGAPAPK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 AYVLGSPALAAELEAVGVASVGVGPEPLQGEGPGDWLHAPLEPDVRAVVVGFDPHFSYMK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 AYVLGSPALAAELEAVGVASVGVGPEPLQGEGPGDWLHAPLEPDVRAVVVGFDPHFSYMK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 LTKALRYLQQPGCLLVGTNMDNRLPLENGRFIAGTGCLVRAVEMAAQRQADIIGKPSRFI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LTKALRYLQQPGCLLVGTNMDNRLPLENGRFIAGTGCLVRAVEMAAQRQADIIGKPSRFI
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 FDCVSQEYGINPERTVMVGDRLDTDILLGATCGLKTILTLTGVSTLGDVKNNQESDCVSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 FDCVSQEYGINPERTVMVGDRLDTDILLGATCGLKTILTLTGVSTLGDVKNNQESDCVSK
              250       260       270       280       290       300

              310       320 
pF1KE0 KKMVPDFYVDSIADLLPALQG
       :::::::::::::::::::::
CCDS42 KKMVPDFYVDSIADLLPALQG
              310       320 

>>CCDS13953.1 PDXP gene_id:57026|Hs108|chr22              (296 aa)
 initn: 828 init1: 458 opt: 519  Z-score: 581.5  bits: 115.7 E(32554): 4.6e-26
Smith-Waterman score: 864; 46.8% identity (69.2% similar) in 312 aa overlap (11-320:2-295)

               10        20        30        40        50        60
pF1KE0 MAAAEAGGDDARCVRLSAERAQALLADVDTLLFDCDGVLWRGETAVPGAPEALRALRARG
                 ::: :: .   . .:. .. .::::::::: :: ::::::: :. :   :
CCDS13          MARCERLRGAALRDVLGRAQGVLFDCDGVLWNGERAVPGAPELLERLARAG
                        10        20        30        40        50 

               70        80        90       100       110          
pF1KE0 KRLGFITNNSSKTRAAYAEKLRRLGFGGPAGPGASLEVFGTAYCTALYLRQRLAGAP-AP
       :   :..::: ..:   : .. ::::::  .     ..:..: :.:  ::::: : : ::
CCDS13 KAALFVSNNSRRARPELALRFARLGFGGLRAE----QLFSSALCAARLLRQRLPGPPDAP
              60        70        80            90       100       

     120        130       140       150       160       170        
pF1KE0 KA-YVLGSPALAAELEAVGVASVGVGPEPLQGEGPGDWLHAPLEPDVRAVVVGFDPHFSY
        : .:::. .: :::.:.:.  .:   .:  :.: .        : ::::.::.: :::.
CCDS13 GAVFVLGGEGLRAELRAAGLRLAG---DPSAGDGAA--------PRVRAVLVGYDEHFSF
       110       120       130          140               150      

      180       190       200       210       220       230        
pF1KE0 MKLTKALRYLQQPGCLLVGTNMDNRLPLENGRFIAGTGCLVRAVEMAAQRQADIIGKPSR
        :: .:  .:..: ::::.:. :   :: .:    ::: :. ::: :. ::: ..:::: 
CCDS13 AKLREACAHLRDPECLLVATDRDPWHPLSDGSRTPGTGSLAAAVETASGRQALVVGKPSP
        160       170       180       190       200       210      

      240       250       260       270       280       290        
pF1KE0 FIFDCVSQEYGINPERTVMVGDRLDTDILLGATCGLKTILTLTGVSTLGDVKNNQESDCV
       ..:.:......:.: ::.::::::.::::.:  ::. :.::::::: :   .. :    .
CCDS13 YMFECITENFSIDPARTLMVGDRLETDILFGHRCGMTTVLTLTGVSRL---EEAQAYLAA
        220       230       240       250       260          270   

      300       310       320 
pF1KE0 SKKKMVPDFYVDSIADLLPALQG
       ... .:: .::.:::::  .:. 
CCDS13 GQHDLVPHYYVESIADLTEGLED
           280       290      




321 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 04:40:46 2016 done: Mon Nov  7 04:40:47 2016
 Total Scan time:  2.670 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]