FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0271, 358 aa
  1>>>pF1KE0271 358 - 358 aa - 358 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.2618+/-0.000653; mu= 13.6553+/- 0.040
 mean_var=105.5384+/-20.935, 0's: 0 Z-trim(114.2): 5  B-trim: 0 in 0/52
 Lambda= 0.124844
 statistics sampled from 14806 (14809) to 14806 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.789), E-opt: 0.2 (0.455), width:  16
 Scan time:  3.410

The best scores are:                                      opt bits E(32554)
CCDS41668.1 SAC3D1 gene_id:29901|Hs108|chr11       ( 358) 2398 441.8 4.4e-124
CCDS13734.1 MCM3AP gene_id:8888|Hs108|chr21        (1980)  450 91.4 6.9e-18


>>CCDS41668.1 SAC3D1 gene_id:29901|Hs108|chr11            (358 aa)
 initn: 2398 init1: 2398 opt: 2398  Z-score: 2341.2  bits: 441.8 E(32554): 4.4e-124
Smith-Waterman score: 2398; 100.0% identity (100.0% similar) in 358 aa overlap (1-358:1-358)

               10        20        30        40        50        60
pF1KE0 MPGCELPVGTCPDMCPAAERAQREREHRLHRLEVVPGCRQDPPRADPQRAVKEYSRPAAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MPGCELPVGTCPDMCPAAERAQREREHRLHRLEVVPGCRQDPPRADPQRAVKEYSRPAAG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 KPRPPPSQLRPPSVLLATVRYLAGEVAESADIARAEVASFVADRLRAVLLDLALQGAGDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 KPRPPPSQLRPPSVLLATVRYLAGEVAESADIARAEVASFVADRLRAVLLDLALQGAGDA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 EAAVVLEAALATLLTVVARLGPDAARGPADPVLLQAQVQEGFGSLRRCYARGAGPHPRQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 EAAVVLEAALATLLTVVARLGPDAARGPADPVLLQAQVQEGFGSLRRCYARGAGPHPRQP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 AFQGLFLLYNLGSVEALHEVLQLPAALRACPPLRKALAVDAAFREGNAARLFRLLQTLPY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 AFQGLFLLYNLGSVEALHEVLQLPAALRACPPLRKALAVDAAFREGNAARLFRLLQTLPY
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 LPSCAVQCHVGHARREALARFARAFSTPKGQTLPLGFMVNLLALDGLREARDLCQAHGLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 LPSCAVQCHVGHARREALARFARAFSTPKGQTLPLGFMVNLLALDGLREARDLCQAHGLP
              250       260       270       280       290       300

              310       320       330       340       350        
pF1KE0 LDGEERVVFLRGRYVEEGLPPASTCKVLVESKLRGRTLEEVVMAEEEDEGTDRPGSPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 LDGEERVVFLRGRYVEEGLPPASTCKVLVESKLRGRTLEEVVMAEEEDEGTDRPGSPA
              310       320       330       340       350        

>>CCDS13734.1 MCM3AP gene_id:8888|Hs108|chr21             (1980 aa)
 initn: 397 init1: 159 opt: 450  Z-score: 434.6  bits: 91.4 E(32554): 6.9e-18
Smith-Waterman score: 450; 31.5% identity (58.3% similar) in 333 aa overlap (8-333:634-958)

                                      10        20        30       
pF1KE0                        MPGCELPVGTCPDMCPAAERAQREREHRLHRLEVVPG
                                     :::: ::::  :: .:: . .:  .:::::
CCDS13 KEKYRLLDQRDRIMRQARVKRTDLDKARTFVGTCLDMCPEKERYMRETRSQLSVFEVVPG
           610       620       630       640       650       660   

        40        50        60        70        80        90       
pF1KE0 CRQDPPRADPQRAVKEYSRPAAGKPRPPPSQLRPPSVLLATVRYLAGEVAESADIARAEV
         :    .:   ::::::: .: . .: : .:::  ::  :. ::. .. .. . .  . 
CCDS13 TDQ----VDHAAAVKEYSRSSADQEEPLPHELRPLPVLSRTMDYLVTQIMDQKEGSLRDW
               670       680       690       700       710         

       100       110       120       130       140       150       
pF1KE0 ASFVADRLRAVLLDLALQGAGDAEAAVVLEAALATLLTVVARLGPDAARGPADPVLLQAQ
        .:: .: :..  :.. :   :  .. ..:   . .    :..  .   .  :  . . .
CCDS13 YDFVWNRTRGIRKDITQQHLCDPLTVSLIEKC-TRFHIHCAHFMCEEPMSSFDAKINNEN
     720       730       740       750        760       770        

       160       170         180        190       200       210    
pF1KE0 VQEGFGSLRRCYA--RGAGPHPRQPA-FQGLFLLYNLGSVEALHEVLQLPAALRACPPLR
       . . . ::.. :   :. :    . : :::  .: .:.. . :.:: :.  :.:    ..
CCDS13 MTKCLQSLKEMYQDLRNKGVFCASEAEFQGYNVLLSLNKGDILREVQQFHPAVRNSSEVK
      780       790       800       810       820       830        

          220       230       240       250         260       270  
pF1KE0 KALAVDAAFREGNAARLFRLLQTLPYLPSCAVQCHVGHARREALA--RFARAFSTPKGQT
        :. . ::.  .: .:.:.:.:.  :: .: ..:. .. :..::    :: . :: ..  
CCDS13 FAVQAFAALNSNNFVRFFKLVQSASYLNACLLHCYFSQIRKDALRALNFAYTVSTQRSTI
      840       850       860       870       880       890        

            280       290       300        310        320       330
pF1KE0 LPLGFMVNLLALDGLREARDLCQAHGLPL-DGEERVVFLRGRYVE-EGLPPASTCKVLVE
       .::  .: .: .   .:: :.   ::: . ::   : . :. ..: :::   .  .:.. 
CCDS13 FPLDGVVRMLLFRDCEEATDFLTCHGLTVSDGC--VELNRSAFLEPEGLSK-TRKSVFIT
      900       910       920       930         940        950     

              340       350                                        
pF1KE0 SKLRGRTLEEVVMAEEEDEGTDRPGSPA                                
        ::                                                         
CCDS13 RKLTVSVGEIVNGGPLPPVPRHTPVCSFNSQNKYIGESLAAELPVSTQRPGSDTVGGGRG
         960       970       980       990      1000      1010     




358 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 04:07:43 2016 done: Mon Nov  7 04:07:43 2016
 Total Scan time:  3.410 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]