FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0237, 158 aa
  1>>>pF1KE0237 158 - 158 aa - 158 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.4079+/-0.000656; mu= 6.2241+/- 0.040
 mean_var=187.8329+/-37.487, 0's: 0 Z-trim(118.2): 2  B-trim: 0 in 0/52
 Lambda= 0.093581
 statistics sampled from 19043 (19045) to 19043 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.851), E-opt: 0.2 (0.585), width:  16
 Scan time:  2.320

The best scores are:                                      opt bits E(32554)
CCDS33145.1 CYS1 gene_id:192668|Hs108|chr2         ( 158) 1065 154.1 3.3e-38


>>CCDS33145.1 CYS1 gene_id:192668|Hs108|chr2              (158 aa)
 initn: 1065 init1: 1065 opt: 1065  Z-score: 799.4  bits: 154.1 E(32554): 3.3e-38
Smith-Waterman score: 1065; 100.0% identity (100.0% similar) in 158 aa overlap (1-158:1-158)

               10        20        30        40        50        60
pF1KE0 MGSGSSRSSRTLRRRRSPESLPAGPGAAALEGGTRRRVPVAAAEVPGAAAEEAPGRDPSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MGSGSSRSSRTLRRRRSPESLPAGPGAAALEGGTRRRVPVAAAEVPGAAAEEAPGRDPSP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 VAPPDGRDETLRLLDELLAESAAWGPPEPAPRRPARLRPTAVAGSAVCAEQSTEGHPGSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 VAPPDGRDETLRLLDELLAESAAWGPPEPAPRRPARLRPTAVAGSAVCAEQSTEGHPGSG
               70        80        90       100       110       120

              130       140       150        
pF1KE0 NVSEAPGSGRKKPERPAAISYDHSEEGLMASIEREYCR
       ::::::::::::::::::::::::::::::::::::::
CCDS33 NVSEAPGSGRKKPERPAAISYDHSEEGLMASIEREYCR
              130       140       150        




158 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 04:09:27 2016 done: Mon Nov  7 04:09:27 2016
 Total Scan time:  2.320 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]