FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0233, 407 aa
  1>>>pF1KE0233 407 - 407 aa - 407 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0758+/-0.000692; mu= 15.7126+/- 0.042
 mean_var=114.2361+/-22.742, 0's: 0 Z-trim(113.9): 37  B-trim: 0 in 0/50
 Lambda= 0.119998
 statistics sampled from 14493 (14530) to 14493 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.774), E-opt: 0.2 (0.446), width:  16
 Scan time:  3.420

The best scores are:                                      opt bits E(32554)
CCDS8891.1 GDF11 gene_id:10220|Hs108|chr12         ( 407) 2825 499.4 2.6e-141
CCDS2303.1 MSTN gene_id:2660|Hs108|chr2            ( 375) 1383 249.7 3.4e-66


>>CCDS8891.1 GDF11 gene_id:10220|Hs108|chr12              (407 aa)
 initn: 2825 init1: 2825 opt: 2825  Z-score: 2650.6  bits: 499.4 E(32554): 2.6e-141
Smith-Waterman score: 2825; 100.0% identity (100.0% similar) in 407 aa overlap (1-407:1-407)

               10        20        30        40        50        60
pF1KE0 MVLAAPLLLGFLLLALELRPRGEAAEGPAAAAAAAAAAAAAGVGGERSSRPAPSVAPEPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 MVLAAPLLLGFLLLALELRPRGEAAEGPAAAAAAAAAAAAAGVGGERSSRPAPSVAPEPD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 GCPVCVWRQHSRELRLESIKSQILSKLRLKEAPNISREVVKQLLPKAPPLQQILDLHDFQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 GCPVCVWRQHSRELRLESIKSQILSKLRLKEAPNISREVVKQLLPKAPPLQQILDLHDFQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 GDALQPEDFLEEDEYHATTETVISMAQETDPAVQTDGSPLCCHFHFSPKVMFTKVLKAQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 GDALQPEDFLEEDEYHATTETVISMAQETDPAVQTDGSPLCCHFHFSPKVMFTKVLKAQL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 WVYLRPVPRPATVYLQILRLKPLTGEGTAGGGGGGRRHIRIRSLKIELHSRSGHWQSIDF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 WVYLRPVPRPATVYLQILRLKPLTGEGTAGGGGGGRRHIRIRSLKIELHSRSGHWQSIDF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 KQVLHSWFRQPQSNWGIEINAFDPSGTDLAVTSLGPGAEGLHPFMELRVLENTKRSRRNL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 KQVLHSWFRQPQSNWGIEINAFDPSGTDLAVTSLGPGAEGLHPFMELRVLENTKRSRRNL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 GLDCDEHSSESRCCRYPLTVDFEAFGWDWIIAPKRYKANYCSGQCEYMFMQKYPHTHLVQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 GLDCDEHSSESRCCRYPLTVDFEAFGWDWIIAPKRYKANYCSGQCEYMFMQKYPHTHLVQ
              310       320       330       340       350       360

              370       380       390       400       
pF1KE0 QANPRGSAGPCCTPTKMSPINMLYFNDKQQIIYGKIPGMVVDRCGCS
       :::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 QANPRGSAGPCCTPTKMSPINMLYFNDKQQIIYGKIPGMVVDRCGCS
              370       380       390       400       

>>CCDS2303.1 MSTN gene_id:2660|Hs108|chr2                 (375 aa)
 initn: 1349 init1: 1088 opt: 1383  Z-score: 1301.9  bits: 249.7 E(32554): 3.4e-66
Smith-Waterman score: 1645; 65.1% identity (84.9% similar) in 352 aa overlap (58-407:34-375)

        30        40        50        60         70        80      
pF1KE0 PAAAAAAAAAAAAAGVGGERSSRPAPSVAPEPDG-CPVCVWRQHSRELRLESIKSQILSK
                                     : .: : .:.:::...  :.:.:: :::::
CCDS23 LQLCVYIYLFMLIVAGPVDLNENSEQKENVEKEGLCNACTWRQNTKSSRIEAIKIQILSK
            10        20        30        40        50        60   

         90       100       110       120       130       140      
pF1KE0 LRLKEAPNISREVVKQLLPKAPPLQQILDLHDFQGDALQPEDFLEEDEYHATTETVISMA
       :::. :::::..:..:::::::::....: .: : :  . .  ::.:.:::::::.:.: 
CCDS23 LRLETAPNISKDVIRQLLPKAPPLRELIDQYDVQRDD-SSDGSLEDDDYHATTETIITMP
            70        80        90       100        110       120  

        150       160       170       180       190       200      
pF1KE0 QETDPAVQTDGSPLCCHFHFSPKVMFTKVLKAQLWVYLRPVPRPATVYLQILRL-KPLTG
        :.:  .:.::.: :: :.:: :....::.:::::.:::::  :.::..::::: ::.  
CCDS23 TESDFLMQVDGKPKCCFFKFSSKIQYNKVVKAQLWIYLRPVETPTTVFVQILRLIKPMKD
            130       140       150       160       170       180  

         210       220       230       240       250       260     
pF1KE0 EGTAGGGGGGRRHIRIRSLKIELHSRSGHWQSIDFKQVLHSWFRQPQSNWGIEINAFDPS
                : :.  :::::....  .: ::::: : ::..:..::.:: ::::.:.: .
CCDS23 ---------GTRYTGIRSLKLDMNPGTGIWQSIDVKTVLQNWLKQPESNLGIEIKALDEN
                     190       200       210       220       230   

         270       280       290       300       310       320     
pF1KE0 GTDLAVTSLGPGAEGLHPFMELRVLENTKRSRRNLGLDCDEHSSESRCCRYPLTVDFEAF
       : :::::  ::: .::.::.:..: .. :::::..::::::::.::::::::::::::::
CCDS23 GHDLAVTFPGPGEDGLNPFLEVKVTDTPKRSRRDFGLDCDEHSTESRCCRYPLTVDFEAF
           240       250       260       270       280       290   

         330       340       350       360       370       380     
pF1KE0 GWDWIIAPKRYKANYCSGQCEYMFMQKYPHTHLVQQANPRGSAGPCCTPTKMSPINMLYF
       ::::::::::::::::::.::..:.:::::::::.:::::::::::::::::::::::::
CCDS23 GWDWIIAPKRYKANYCSGECEFVFLQKYPHTHLVHQANPRGSAGPCCTPTKMSPINMLYF
           300       310       320       330       340       350   

         390       400       
pF1KE0 NDKQQIIYGKIPGMVVDRCGCS
       : :.::::::::.:::::::::
CCDS23 NGKEQIIYGKIPAMVVDRCGCS
           360       370     




407 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 01:30:00 2016 done: Tue Nov  8 01:30:01 2016
 Total Scan time:  3.420 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]