FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE0146, 296 aa 1>>>pF1KE0146 296 - 296 aa - 296 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.6723+/-0.000319; mu= 15.3614+/- 0.020 mean_var=95.5041+/-18.697, 0's: 0 Z-trim(118.0): 11 B-trim: 0 in 0/56 Lambda= 0.131239 statistics sampled from 30504 (30515) to 30504 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.731), E-opt: 0.2 (0.358), width: 16 Scan time: 6.100 The best scores are: opt bits E(85289) NP_054894 (OMIM: 611828) 39S ribosomal protein L15 ( 296) 2004 389.1 5.3e-108 XP_016868851 (OMIM: 611828) PREDICTED: 39S ribosom ( 185) 1227 241.9 7.3e-64 >>NP_054894 (OMIM: 611828) 39S ribosomal protein L15, mi (296 aa) initn: 2004 init1: 2004 opt: 2004 Z-score: 2059.9 bits: 389.1 E(85289): 5.3e-108 Smith-Waterman score: 2004; 99.3% identity (99.7% similar) in 296 aa overlap (1-296:1-296) 10 20 30 40 50 60 pF1KE0 MAGPLQGGGARALDLLRGLPRVSLANLKPNPGSKKPERRPRGRRRGRKCGRGHKGERQRG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_054 MAGPLQGGGARALDLLRGLPRVSLANLKPNPGSKKPERRPRGRRRGRKCGRGHKGERQRG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE0 TRPRLGFEGGQTPFYIRIPKYGFNEGHSFRRQYKPMSLNRLQYLIDLGRVDPSQPIDLTQ :::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::: NP_054 TRPRLGFEGGQTPFYIRIPKYGFNEGHSFRRQYKPLSLNRLQYLIDLGRVDPSQPIDLTQ 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE0 LVNGRGVTIQPLKRDYDVQLVEEGADTFTAKVNIEVQLASELAIAAIEKNGGVVTTAFYD :::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::: NP_054 LVNGRGVTIQPLKRDYGVQLVEEGADTFTAKVNIEVQLASELAIAAIEKNGGVVTTAFYD 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE0 PRSLDIVCKPVPFFLRGQPIPKRMLPPEELVPYYTDAKNRGYLADPAKFPEARLELARKY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_054 PRSLDIVCKPVPFFLRGQPIPKRMLPPEELVPYYTDAKNRGYLADPAKFPEARLELARKY 190 200 210 220 230 240 250 260 270 280 290 pF1KE0 GYILPDITKDELFKMLCTRKDPRQIFFGLAPGWVVNMADKKILKPTDENLLKYYTS :::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_054 GYILPDITKDELFKMLCTRKDPRQIFFGLAPGWVVNMADKKILKPTDENLLKYYTS 250 260 270 280 290 >>XP_016868851 (OMIM: 611828) PREDICTED: 39S ribosomal p (185 aa) initn: 1227 init1: 1227 opt: 1227 Z-score: 1267.5 bits: 241.9 E(85289): 7.3e-64 Smith-Waterman score: 1227; 98.9% identity (99.5% similar) in 184 aa overlap (1-184:1-184) 10 20 30 40 50 60 pF1KE0 MAGPLQGGGARALDLLRGLPRVSLANLKPNPGSKKPERRPRGRRRGRKCGRGHKGERQRG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MAGPLQGGGARALDLLRGLPRVSLANLKPNPGSKKPERRPRGRRRGRKCGRGHKGERQRG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE0 TRPRLGFEGGQTPFYIRIPKYGFNEGHSFRRQYKPMSLNRLQYLIDLGRVDPSQPIDLTQ :::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::: XP_016 TRPRLGFEGGQTPFYIRIPKYGFNEGHSFRRQYKPLSLNRLQYLIDLGRVDPSQPIDLTQ 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE0 LVNGRGVTIQPLKRDYDVQLVEEGADTFTAKVNIEVQLASELAIAAIEKNGGVVTTAFYD :::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::: XP_016 LVNGRGVTIQPLKRDYGVQLVEEGADTFTAKVNIEVQLASELAIAAIEKNGGVVTTAFYD 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE0 PRSLDIVCKPVPFFLRGQPIPKRMLPPEELVPYYTDAKNRGYLADPAKFPEARLELARKY :::: XP_016 PRSLG 296 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Fri Nov 4 00:24:47 2016 done: Fri Nov 4 00:24:48 2016 Total Scan time: 6.100 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]