FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0132, 246 aa
  1>>>pF1KE0132 246 - 246 aa - 246 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.4202+/-0.00117; mu= 0.5358+/- 0.070
 mean_var=166.7902+/-33.390, 0's: 0 Z-trim(107.4): 12  B-trim: 54 in 1/52
 Lambda= 0.099309
 statistics sampled from 9577 (9581) to 9577 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.644), E-opt: 0.2 (0.294), width:  16
 Scan time:  2.180

The best scores are:                                      opt bits E(32554)
CCDS14727.1 BCAP31 gene_id:10134|Hs108|chrX        ( 246) 1532 231.3 4.8e-61
CCDS48191.1 BCAP31 gene_id:10134|Hs108|chrX        ( 313) 1532 231.3 5.8e-61
CCDS34731.1 BCAP29 gene_id:55973|Hs108|chr7        ( 241)  733 116.8 1.4e-26
CCDS34730.1 BCAP29 gene_id:55973|Hs108|chr7        ( 348)  734 117.0 1.7e-26


>>CCDS14727.1 BCAP31 gene_id:10134|Hs108|chrX             (246 aa)
 initn: 1532 init1: 1532 opt: 1532  Z-score: 1209.5  bits: 231.3 E(32554): 4.8e-61
Smith-Waterman score: 1532; 100.0% identity (100.0% similar) in 246 aa overlap (1-246:1-246)

               10        20        30        40        50        60
pF1KE0 MSLQWTAVATFLYAEVFVVLLLCIPFISPKRWQKIFKSRLVELLVSYGNTFFVVLIVILV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MSLQWTAVATFLYAEVFVVLLLCIPFISPKRWQKIFKSRLVELLVSYGNTFFVVLIVILV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 LLVIDAVREIRKYDDVTEKVNLQNNPGAMEHFHMKLFRAQRNLYIAGFSLLLSFLLRRLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 LLVIDAVREIRKYDDVTEKVNLQNNPGAMEHFHMKLFRAQRNLYIAGFSLLLSFLLRRLV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 TLISQQATLLASNEAFKKQAESASEAAKKYMEENDQLKKGAAVDGGKLDVGNAEVKLEEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 TLISQQATLLASNEAFKKQAESASEAAKKYMEENDQLKKGAAVDGGKLDVGNAEVKLEEE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 NRSLKADLQKLKDELASTKQKLEKAENQVLAMRKQSEGLTKEYDRLLEEHAKLQAAVDGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 NRSLKADLQKLKDELASTKQKLEKAENQVLAMRKQSEGLTKEYDRLLEEHAKLQAAVDGP
              190       200       210       220       230       240

             
pF1KE0 MDKKEE
       ::::::
CCDS14 MDKKEE
             

>>CCDS48191.1 BCAP31 gene_id:10134|Hs108|chrX             (313 aa)
 initn: 1532 init1: 1532 opt: 1532  Z-score: 1207.9  bits: 231.3 E(32554): 5.8e-61
Smith-Waterman score: 1532; 100.0% identity (100.0% similar) in 246 aa overlap (1-246:68-313)

                                             10        20        30
pF1KE0                               MSLQWTAVATFLYAEVFVVLLLCIPFISPK
                                     ::::::::::::::::::::::::::::::
CCDS48 GEAALDVLTHVLEGAGNKLTSSCGKPSSNRMSLQWTAVATFLYAEVFVVLLLCIPFISPK
        40        50        60        70        80        90       

               40        50        60        70        80        90
pF1KE0 RWQKIFKSRLVELLVSYGNTFFVVLIVILVLLVIDAVREIRKYDDVTEKVNLQNNPGAME
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 RWQKIFKSRLVELLVSYGNTFFVVLIVILVLLVIDAVREIRKYDDVTEKVNLQNNPGAME
       100       110       120       130       140       150       

              100       110       120       130       140       150
pF1KE0 HFHMKLFRAQRNLYIAGFSLLLSFLLRRLVTLISQQATLLASNEAFKKQAESASEAAKKY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 HFHMKLFRAQRNLYIAGFSLLLSFLLRRLVTLISQQATLLASNEAFKKQAESASEAAKKY
       160       170       180       190       200       210       

              160       170       180       190       200       210
pF1KE0 MEENDQLKKGAAVDGGKLDVGNAEVKLEEENRSLKADLQKLKDELASTKQKLEKAENQVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 MEENDQLKKGAAVDGGKLDVGNAEVKLEEENRSLKADLQKLKDELASTKQKLEKAENQVL
       220       230       240       250       260       270       

              220       230       240      
pF1KE0 AMRKQSEGLTKEYDRLLEEHAKLQAAVDGPMDKKEE
       ::::::::::::::::::::::::::::::::::::
CCDS48 AMRKQSEGLTKEYDRLLEEHAKLQAAVDGPMDKKEE
       280       290       300       310   

>>CCDS34731.1 BCAP29 gene_id:55973|Hs108|chr7             (241 aa)
 initn: 731 init1: 293 opt: 733  Z-score: 590.9  bits: 116.8 E(32554): 1.4e-26
Smith-Waterman score: 733; 50.6% identity (79.6% similar) in 235 aa overlap (1-234:1-230)

               10        20        30        40        50        60
pF1KE0 MSLQWTAVATFLYAEVFVVLLLCIPFISPKRWQKIFKSRLVELLVSYGNTFFVVLIVILV
       :.:::.:::::::::. ..:..:.::: :.::::::.  .   .... :  :...:..:.
CCDS34 MTLQWAAVATFLYAEIGLILIFCLPFIPPQRWQKIFSFNVWGKIATFWNKAFLTIIILLI
               10        20        30        40        50        60

               70         80        90       100       110         
pF1KE0 LLVIDAVREIRKYDDV-TEKVNLQNNPGAMEHFHMKLFRAQRNLYIAGFSLLLSFLLRRL
       .: .:::::.:::..: : . .  . : :.:: .:::::.::::::.::::.. ..::::
CCDS34 VLFLDAVREVRKYSSVHTIEKSSTSRPDAYEHTQMKLFRSQRNLYISGFSLFFWLVLRRL
               70        80        90       100       110       120

     120       130       140       150       160       170         
pF1KE0 VTLISQQATLLASNEAFKKQAESASEAAKKYMEENDQLKKGAAVDGGKLDVGNAEVKLEE
       ::::.: :  :... ..: :::....::::.::::..::.    . ::    . :  :: 
CCDS34 VTLITQLAKELSNKGVLKTQAENTNKAAKKFMEENEKLKR-ILKSHGK----DEECVLEA
              130       140       150       160            170     

     180       190       200       210       220       230         
pF1KE0 ENRSLKADLQKLKDELASTKQKLEKAENQVLAMRKQSEGLTKEYDRLLEEHAKLQAAVDG
       ::..:  : .::: :: .:.. : ::.:.:. :. ::: :.::::.::.::..::     
CCDS34 ENKKLVEDQEKLKTELRKTSDALSKAQNDVMEMKMQSERLSKEYDQLLKEHSELQDRLER
         180       190       200       210       220       230     

     240      
pF1KE0 PMDKKEE
              
CCDS34 GNKKRL 
         240  

>>CCDS34730.1 BCAP29 gene_id:55973|Hs108|chr7             (348 aa)
 initn: 731 init1: 293 opt: 734  Z-score: 589.3  bits: 117.0 E(32554): 1.7e-26
Smith-Waterman score: 734; 49.4% identity (78.4% similar) in 245 aa overlap (1-244:1-240)

               10        20        30        40        50        60
pF1KE0 MSLQWTAVATFLYAEVFVVLLLCIPFISPKRWQKIFKSRLVELLVSYGNTFFVVLIVILV
       :.:::.:::::::::. ..:..:.::: :.::::::.  .   .... :  :...:..:.
CCDS34 MTLQWAAVATFLYAEIGLILIFCLPFIPPQRWQKIFSFNVWGKIATFWNKAFLTIIILLI
               10        20        30        40        50        60

               70         80        90       100       110         
pF1KE0 LLVIDAVREIRKYDDV-TEKVNLQNNPGAMEHFHMKLFRAQRNLYIAGFSLLLSFLLRRL
       .: .:::::.:::..: : . .  . : :.:: .:::::.::::::.::::.. ..::::
CCDS34 VLFLDAVREVRKYSSVHTIEKSSTSRPDAYEHTQMKLFRSQRNLYISGFSLFFWLVLRRL
               70        80        90       100       110       120

     120       130       140       150       160       170         
pF1KE0 VTLISQQATLLASNEAFKKQAESASEAAKKYMEENDQLKKGAAVDGGKLDVGNAEVKLEE
       ::::.: :  :... ..: :::....::::.::::..::.    . ::    . :  :: 
CCDS34 VTLITQLAKELSNKGVLKTQAENTNKAAKKFMEENEKLKR-ILKSHGK----DEECVLEA
              130       140       150       160            170     

     180       190       200       210       220       230         
pF1KE0 ENRSLKADLQKLKDELASTKQKLEKAENQVLAMRKQSEGLTKEYDRLLEEHAKLQAAVDG
       ::..:  : .::: :: .:.. : ::.:.:. :. ::: :.::::.::.::..:: .  :
CCDS34 ENKKLVEDQEKLKTELRKTSDALSKAQNDVMEMKMQSERLSKEYDQLLKEHSELQHSSFG
         180       190       200       210       220       230     

     240                                                           
pF1KE0 PMDKKEE                                                     
        . .:                                                       
CCDS34 EFLSKRSHKNGSIGKQTGSRKGSFRKRQQEKTVNFIKDTCNILCQNDNFVMLASRKFKFR
         240       250       260       270       280       290     




246 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 04:08:18 2016 done: Mon Nov  7 04:08:19 2016
 Total Scan time:  2.180 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]