Result of FASTA (ccds) for
pFN21AB9997
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9997, 1173 aa
1>>>pF1KB9997 1173 - 1173 aa - 1173 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.6826+/-0.00107; mu= 7.2073+/- 0.065
mean_var=147.0004+/-29.368, 0's: 0 Z-trim(108.9): 19 B-trim: 3 in 1/50
Lambda= 0.105783
statistics sampled from 10487 (10491) to 10487 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.668), E-opt: 0.2 (0.322), width: 16
Scan time: 3.410
The best scores are: opt bits E(32554)
CCDS110.1 UBE4B gene_id:10277|Hs108|chr1 (1173) 7754 1195.7 0
CCDS41245.1 UBE4B gene_id:10277|Hs108|chr1 (1302) 6038 933.9 0
CCDS55790.1 UBE4A gene_id:9354|Hs108|chr11 (1066) 738 125.0 9.5e-28
CCDS8396.1 UBE4A gene_id:9354|Hs108|chr11 (1073) 738 125.0 9.6e-28
>>CCDS110.1 UBE4B gene_id:10277|Hs108|chr1 (1173 aa)
initn: 7754 init1: 7754 opt: 7754 Z-score: 6397.7 bits: 1195.7 E(32554): 0
Smith-Waterman score: 7754; 100.0% identity (100.0% similar) in 1173 aa overlap (1-1173:1-1173)
10 20 30 40 50 60
pF1KB9 MEELSADEIRRRRLARLAGGQTSQPTTPLTSPQRENPPGPPIAASAPGPSQSLGLNVHNM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MEELSADEIRRRRLARLAGGQTSQPTTPLTSPQRENPPGPPIAASAPGPSQSLGLNVHNM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 TPATSPIGASGVAHRSQSSEGVSSLSSSPSNSLETQSQSLSRSQSMDIDGVSCEKSMSQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 TPATSPIGASGVAHRSQSSEGVSSLSSSPSNSLETQSQSLSRSQSMDIDGVSCEKSMSQV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 DVDSGIENMEVDENDRREKRSLSDKEPSSGPEVSEEQALQLVCKIFRVSWKDRDRDVIFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 DVDSGIENMEVDENDRREKRSLSDKEPSSGPEVSEEQALQLVCKIFRVSWKDRDRDVIFL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 SSLSAQFKQNPKEVFSDFKDLIGQILMEVLMMSTQTRDENPFASLTATSQPIAAAARSPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SSLSAQFKQNPKEVFSDFKDLIGQILMEVLMMSTQTRDENPFASLTATSQPIAAAARSPD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 RNLLLNTGSNPGTSPMFCSVASFGASSLSSLGASGGASNWDSYSDHFTIETCKETDMLNY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 RNLLLNTGSNPGTSPMFCSVASFGASSLSSLGASGGASNWDSYSDHFTIETCKETDMLNY
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 LIECFDRVGIEEKKAPKMCSQPAVSQLLSNIRSQCISHTALVLQGSLTQPRSLQQPSFLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LIECFDRVGIEEKKAPKMCSQPAVSQLLSNIRSQCISHTALVLQGSLTQPRSLQQPSFLV
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 PYMLCRNLPYGFIQELVRTTHQDEEVFKQIFIPILQGLALAAKECSLDSDYFKYPLMALG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 PYMLCRNLPYGFIQELVRTTHQDEEVFKQIFIPILQGLALAAKECSLDSDYFKYPLMALG
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB9 ELCETKFGKTHPVCNLVASLRLWLPKSLSPGCGRELQRLSYLGAFFSFSVFAEDDVKVVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 ELCETKFGKTHPVCNLVASLRLWLPKSLSPGCGRELQRLSYLGAFFSFSVFAEDDVKVVE
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB9 KYFSGPAITLENTRVVSQSLQHYLELGRQELFKILHSILLNGETREAALSYMAAVVNANM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 KYFSGPAITLENTRVVSQSLQHYLELGRQELFKILHSILLNGETREAALSYMAAVVNANM
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB9 KKAQMQTDDRLVSTDGFMLNFLWVLQQLSTKIKLETVDPTYIFHPRCRITLPNDETRVNA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 KKAQMQTDDRLVSTDGFMLNFLWVLQQLSTKIKLETVDPTYIFHPRCRITLPNDETRVNA
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB9 TMEDVNDWLTELYGDQPPFSEPKFPTECFFLTLHAHHLSILPSCRRYIRRLRAIRELNRT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 TMEDVNDWLTELYGDQPPFSEPKFPTECFFLTLHAHHLSILPSCRRYIRRLRAIRELNRT
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB9 VEDLKNNESQWKDSPLATRHREMLKRCKTQLKKLVRCKACADAGLLDESFLRRCLNFYGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 VEDLKNNESQWKDSPLATRHREMLKRCKTQLKKLVRCKACADAGLLDESFLRRCLNFYGL
670 680 690 700 710 720
730 740 750 760 770 780
pF1KB9 LIQLLLRILDPAYPDITLPLNSDVPKVFAALPEFYVEDVAEFLFFIVQYSPQALYEPCTQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LIQLLLRILDPAYPDITLPLNSDVPKVFAALPEFYVEDVAEFLFFIVQYSPQALYEPCTQ
730 740 750 760 770 780
790 800 810 820 830 840
pF1KB9 DIVMFLVVMLCNQNYIRNPYLVAKLVEVMFMTNPAVQPRTQKFFEMIENHPLSTKLLVPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 DIVMFLVVMLCNQNYIRNPYLVAKLVEVMFMTNPAVQPRTQKFFEMIENHPLSTKLLVPS
790 800 810 820 830 840
850 860 870 880 890 900
pF1KB9 LMKFYTDVEHTGATSEFYDKFTIRYHISTIFKSLWQNIAHHGTFMEEFNSGKQFVRYINM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LMKFYTDVEHTGATSEFYDKFTIRYHISTIFKSLWQNIAHHGTFMEEFNSGKQFVRYINM
850 860 870 880 890 900
910 920 930 940 950 960
pF1KB9 LINDTTFLLDESLESLKRIHEVQEEMKNKEQWDQLPRDQQQARQSQLAQDERVSRSYLAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LINDTTFLLDESLESLKRIHEVQEEMKNKEQWDQLPRDQQQARQSQLAQDERVSRSYLAL
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KB9 ATETVDMFHILTKQVQKPFLRPELGPRLAAMLNFNLQQLCGPKCRDLKVENPEKYGFEPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 ATETVDMFHILTKQVQKPFLRPELGPRLAAMLNFNLQQLCGPKCRDLKVENPEKYGFEPK
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KB9 KLLDQLTDIYLQLDCARFAKAIADDQRSYSKELFEEVISKMRKAGIKSTIAIEKFKLLAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 KLLDQLTDIYLQLDCARFAKAIADDQRSYSKELFEEVISKMRKAGIKSTIAIEKFKLLAE
1030 1040 1050 1060 1070 1080
1090 1100 1110 1120 1130 1140
pF1KB9 KVEEIVAKNARAEIDYSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSPTDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 KVEEIVAKNARAEIDYSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSPTDP
1090 1100 1110 1120 1130 1140
1150 1160 1170
pF1KB9 FNRQTLTESMLEPVPELKEQIQAWMREKQNSDH
:::::::::::::::::::::::::::::::::
CCDS11 FNRQTLTESMLEPVPELKEQIQAWMREKQNSDH
1150 1160 1170
>>CCDS41245.1 UBE4B gene_id:10277|Hs108|chr1 (1302 aa)
initn: 6019 init1: 6019 opt: 6038 Z-score: 4981.6 bits: 933.9 E(32554): 0
Smith-Waterman score: 6860; 89.3% identity (89.3% similar) in 1205 aa overlap (98-1173:98-1302)
70 80 90 100 110 120
pF1KB9 GASGVAHRSQSSEGVSSLSSSPSNSLETQSQSLSRSQSMDIDGVSCEKSMSQVDVDSGIE
::::::::::::::::::::::::::::::
CCDS41 GASGVAHRSQSSEGVSSLSSSPSNSLETQSQSLSRSQSMDIDGVSCEKSMSQVDVDSGIE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 NMEVDENDRREKRSLSDKEPSSGPEVSEEQALQLVCKIFRVSWKDRDRDVIFLSSLSAQF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 NMEVDENDRREKRSLSDKEPSSGPEVSEEQALQLVCKIFRVSWKDRDRDVIFLSSLSAQF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 KQNPKEVFSDFKDLIGQILMEVLMMSTQTRDENPFASLTATSQPIAAAARSPDRNLLLNT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 KQNPKEVFSDFKDLIGQILMEVLMMSTQTRDENPFASLTATSQPIAAAARSPDRNLLLNT
190 200 210 220 230 240
250 260 270
pF1KB9 GSNPGTSPMFCSVASFGASSLSSL------------------------------------
::::::::::::::::::::::::
CCDS41 GSNPGTSPMFCSVASFGASSLSSLYESSPAPTPSFWSSVPVMGPSLASPSRAASQLAVPS
250 260 270 280 290 300
pF1KB9 ------------------------------------------------------------
CCDS41 TPLSPHSAASGTAAGSQPSSPRYRPYTVTHPWASSGVSILSSSPSPPALASSPQAVPASS
310 320 330 340 350 360
280 290
pF1KB9 ---------------------------------GASGGASNWDSYSDHFTIETCKETDML
:::::::::::::::::::::::::::
CCDS41 SRQRPSSTGPPLPPASPSATSRRPSSLRISPSLGASGGASNWDSYSDHFTIETCKETDML
370 380 390 400 410 420
300 310 320 330 340 350
pF1KB9 NYLIECFDRVGIEEKKAPKMCSQPAVSQLLSNIRSQCISHTALVLQGSLTQPRSLQQPSF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 NYLIECFDRVGIEEKKAPKMCSQPAVSQLLSNIRSQCISHTALVLQGSLTQPRSLQQPSF
430 440 450 460 470 480
360 370 380 390 400 410
pF1KB9 LVPYMLCRNLPYGFIQELVRTTHQDEEVFKQIFIPILQGLALAAKECSLDSDYFKYPLMA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 LVPYMLCRNLPYGFIQELVRTTHQDEEVFKQIFIPILQGLALAAKECSLDSDYFKYPLMA
490 500 510 520 530 540
420 430 440 450 460 470
pF1KB9 LGELCETKFGKTHPVCNLVASLRLWLPKSLSPGCGRELQRLSYLGAFFSFSVFAEDDVKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 LGELCETKFGKTHPVCNLVASLRLWLPKSLSPGCGRELQRLSYLGAFFSFSVFAEDDVKV
550 560 570 580 590 600
480 490 500 510 520 530
pF1KB9 VEKYFSGPAITLENTRVVSQSLQHYLELGRQELFKILHSILLNGETREAALSYMAAVVNA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 VEKYFSGPAITLENTRVVSQSLQHYLELGRQELFKILHSILLNGETREAALSYMAAVVNA
610 620 630 640 650 660
540 550 560 570 580 590
pF1KB9 NMKKAQMQTDDRLVSTDGFMLNFLWVLQQLSTKIKLETVDPTYIFHPRCRITLPNDETRV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 NMKKAQMQTDDRLVSTDGFMLNFLWVLQQLSTKIKLETVDPTYIFHPRCRITLPNDETRV
670 680 690 700 710 720
600 610 620 630 640 650
pF1KB9 NATMEDVNDWLTELYGDQPPFSEPKFPTECFFLTLHAHHLSILPSCRRYIRRLRAIRELN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 NATMEDVNDWLTELYGDQPPFSEPKFPTECFFLTLHAHHLSILPSCRRYIRRLRAIRELN
730 740 750 760 770 780
660 670 680 690 700 710
pF1KB9 RTVEDLKNNESQWKDSPLATRHREMLKRCKTQLKKLVRCKACADAGLLDESFLRRCLNFY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 RTVEDLKNNESQWKDSPLATRHREMLKRCKTQLKKLVRCKACADAGLLDESFLRRCLNFY
790 800 810 820 830 840
720 730 740 750 760 770
pF1KB9 GLLIQLLLRILDPAYPDITLPLNSDVPKVFAALPEFYVEDVAEFLFFIVQYSPQALYEPC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 GLLIQLLLRILDPAYPDITLPLNSDVPKVFAALPEFYVEDVAEFLFFIVQYSPQALYEPC
850 860 870 880 890 900
780 790 800 810 820 830
pF1KB9 TQDIVMFLVVMLCNQNYIRNPYLVAKLVEVMFMTNPAVQPRTQKFFEMIENHPLSTKLLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 TQDIVMFLVVMLCNQNYIRNPYLVAKLVEVMFMTNPAVQPRTQKFFEMIENHPLSTKLLV
910 920 930 940 950 960
840 850 860 870 880 890
pF1KB9 PSLMKFYTDVEHTGATSEFYDKFTIRYHISTIFKSLWQNIAHHGTFMEEFNSGKQFVRYI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 PSLMKFYTDVEHTGATSEFYDKFTIRYHISTIFKSLWQNIAHHGTFMEEFNSGKQFVRYI
970 980 990 1000 1010 1020
900 910 920 930 940 950
pF1KB9 NMLINDTTFLLDESLESLKRIHEVQEEMKNKEQWDQLPRDQQQARQSQLAQDERVSRSYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 NMLINDTTFLLDESLESLKRIHEVQEEMKNKEQWDQLPRDQQQARQSQLAQDERVSRSYL
1030 1040 1050 1060 1070 1080
960 970 980 990 1000 1010
pF1KB9 ALATETVDMFHILTKQVQKPFLRPELGPRLAAMLNFNLQQLCGPKCRDLKVENPEKYGFE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 ALATETVDMFHILTKQVQKPFLRPELGPRLAAMLNFNLQQLCGPKCRDLKVENPEKYGFE
1090 1100 1110 1120 1130 1140
1020 1030 1040 1050 1060 1070
pF1KB9 PKKLLDQLTDIYLQLDCARFAKAIADDQRSYSKELFEEVISKMRKAGIKSTIAIEKFKLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 PKKLLDQLTDIYLQLDCARFAKAIADDQRSYSKELFEEVISKMRKAGIKSTIAIEKFKLL
1150 1160 1170 1180 1190 1200
1080 1090 1100 1110 1120 1130
pF1KB9 AEKVEEIVAKNARAEIDYSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 AEKVEEIVAKNARAEIDYSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSPT
1210 1220 1230 1240 1250 1260
1140 1150 1160 1170
pF1KB9 DPFNRQTLTESMLEPVPELKEQIQAWMREKQNSDH
:::::::::::::::::::::::::::::::::::
CCDS41 DPFNRQTLTESMLEPVPELKEQIQAWMREKQNSDH
1270 1280 1290 1300
>--
initn: 626 init1: 626 opt: 626 Z-score: 517.8 bits: 107.9 E(32554): 1.6e-22
Smith-Waterman score: 626; 100.0% identity (100.0% similar) in 97 aa overlap (1-97:1-97)
10 20 30 40 50 60
pF1KB9 MEELSADEIRRRRLARLAGGQTSQPTTPLTSPQRENPPGPPIAASAPGPSQSLGLNVHNM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MEELSADEIRRRRLARLAGGQTSQPTTPLTSPQRENPPGPPIAASAPGPSQSLGLNVHNM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 TPATSPIGASGVAHRSQSSEGVSSLSSSPSNSLETQSQSLSRSQSMDIDGVSCEKSMSQV
:::::::::::::::::::::::::::::::::::::
CCDS41 TPATSPIGASGVAHRSQSSEGVSSLSSSPSNSLETQSQSLSRSQSMDIDGVSCEKSMSQV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 DVDSGIENMEVDENDRREKRSLSDKEPSSGPEVSEEQALQLVCKIFRVSWKDRDRDVIFL
CCDS41 DVDSGIENMEVDENDRREKRSLSDKEPSSGPEVSEEQALQLVCKIFRVSWKDRDRDVIFL
130 140 150 160 170 180
>>CCDS55790.1 UBE4A gene_id:9354|Hs108|chr11 (1066 aa)
initn: 610 init1: 326 opt: 738 Z-score: 611.6 bits: 125.0 E(32554): 9.5e-28
Smith-Waterman score: 1060; 27.4% identity (59.7% similar) in 928 aa overlap (294-1169:170-1059)
270 280 290 300 310 320
pF1KB9 GASSLSSLGASGGASNWDSYSDHFTIETCKETDMLNYLIECFDRVGIEEKKAPKMCSQPA
: .. :: ::.:. : :.:. :
CCDS55 ARLLLQDPGNHLINMTSSTTLNLSADRDAGERHIFCYLYSCFQRAKEEITKVPENLLPFA
140 150 160 170 180 190
330 340 350 360 370 380
pF1KB9 V---SQLLSNIRSQCISHTALVLQGSLTQPRSLQQPSFLVPYMLCRNLPYGFIQELVRTT
: . .:: :. .. : :. : .:. .. .. ... :..:....
CCDS55 VQCRNLTVSNTRTVLLTPEIYVDQNIHEQLVDLMLEAIQGAHF--EDVTE-FLEEVIEAL
200 210 220 230 240 250
390 400 410 420 430
pF1KB9 HQDEEV--FKQIFIPILQGLALAAKECSLDSDYFKYPLMALGELCETKFGKTHPVCNLVA
:::: : ...::... : : : . . :.: .. : . . . ..
CCDS55 ILDEEVRTFPEVMIPVFDILLGRIK----DLELCQILLYAYLDIL-LYFTRQKDMAKVF-
260 270 280 290 300 310
440 450 460 470 480 490
pF1KB9 SLRLWLPKSLSPGCGRELQRLSYLGAFFSFSVFAEDDVKVVEK--YFSGPAITL-ENTRV
.. :: .: :. :. . ::...:.: . . :::. :: .:. . .. .:
CCDS55 -VEYIQPK--DPTNGQMYQK-TLLGVILSISCLLKTP-GVVENHGYFLNPSRSSPQEIKV
320 330 340 350 360
500 510 520 530 540
pF1KB9 VSQSLQHYLELGRQELFKILHSIL-LNGETREAALSYMAAVVNANMKKAQMQTDD-----
...... .......:...: :. ::.. ::... ..:: .... ...
CCDS55 QEANIHQFMAQFHEKIYQMLKNLLQLSPETKHCILSWLGNCLHANAGRTKIWANQMPEIF
370 380 390 400 410 420
550 560 570 580 590 600
pF1KB9 -RLVSTDGFMLNFLWVLQQLSTKI------KLETVDPTYIFHPRCRITLPNDETRV--NA
.. ..:.:.::. .: .: . .: : .::: : . ::: : :.
CCDS55 FQMYASDAFFLNLGAALLKLCQPFCKPRSSRLLTFNPTY-----CALKELNDEERKIKNV
430 440 450 460 470 480
610 620 630 640 650 660
pF1KB9 TMEDVNDWLTELYGDQPPFSEPKFPTECFFLTLHAHHLSILPSCRRYIRRLRAIRELNRT
:. . : : : : .::::: . .: ...:. : :. : .. .
CCDS55 HMRGL-DKETCLI---PAVQEPKFPQN---YNLVTENLA-LTEYTLYLGFHRLHDQMVKI
490 500 510 520 530
670 680 690 700 710
pF1KB9 VEDLKNNESQWKD-----SPLATRHREMLKRCKTQLKKLVRCKACADAGLLDESFLRRCL
..:. . :.: :: : :: :...:. . ... . ..:. ::
CCDS55 NQNLHRLQVAWRDAQQSSSPAADNLRE-------QFERLMTIYLSTKTAMTEPQMLQNCL
540 550 560 570 580
720 730 740 750 760 770
pF1KB9 NFYGLLIQLLLRIL---DPAYP-DITLPLNSDVPKVFAALPEFYVEDVAEFLFFIVQYSP
:. . ::... . . : ..:.:: : . .: .:::.......::.:. ...
CCDS55 NLQVSMAVLLVQLAIGNEGSQPIELTFPL-PDGYSSLAYVPEFFADNLGDFLIFLRRFAD
590 600 610 620 630 640
780 790 800 810 820
pF1KB9 QALYEPCT--QDIVMFLVVMLCNQNYIRNPYLVAKLVEVMFMTNPAVQ----PRTQKFFE
. : . .. :.... . . ..::.: :::.::. . : .. : ... :.
CCDS55 DILETSADSLEHVLHFITIFTGSIERMKNPHLRAKLAEVLEAVMPHLDQTPNPLVSSVFH
650 660 670 680 690 700
830 840 850 860 870
pF1KB9 ---MIENHPLSTKLLVPSLMKFYTDVEHTGATSEFYDKFTIRYHISTIFKSLW-------
.. : . .: . .:.: ..:.: :: .: .::. : . :.. .:
CCDS55 RKRVFCNFQYAPQL-AEALIKVFVDIEFTGDPHQFEQKFNYRRPMYPILRYMWGTDTYRE
710 720 730 740 750 760
880 890 900 910 920 930
pF1KB9 --QNIAHHGTFMEEFNSGKQFVRYINMLINDTTFLLDESLESLKRIHEVQEEMKNKEQWD
...: ... : . :.:..:.:.::. :::::... :..: ..:. :.. .::
CCDS55 SIKDLADYASKNLEAMNPPLFLRFLNLLMNDAIFLLDEAIQYLSKI-KIQQIEKDRGEWD
770 780 790 800 810 820
940 950 960 970 980 990
pF1KB9 QLPRDQQQARQSQLAQDERVSRSYLALATETVDMFHILTKQVQKPFLRPELGPRLAAMLN
.: . .. ... : . ...: . ...::. . .::..... :..: :. :. .:::
CCDS55 SLTPEARREKEAGLQMFGQLARFHNIMSNETIGTLAFLTSEIKSLFVHPFLAERIISMLN
830 840 850 860 870 880
1000 1010 1020 1030 1040 1050
pF1KB9 FNLQQLCGPKCRDLKVENPEKYGFEPKKLLDQLTDIYLQL-DCARFAKAIADDQRSYSKE
. ::.: ::: :::.. .. :.:..:.... :::.: : : .. : ::::
CCDS55 YFLQHLVGPKMGALKVKDFSEFDFKPQQLVSDICTIYLNLGDEENFCATVPKDGRSYSPT
890 900 910 920 930 940
1060 1070 1080 1090 1100 1110
pF1KB9 LFEEVISKMRKAGIKSTIAIEKFKLLAEKVEEIVAKNARAEIDYSDAPDEFRDPLMDTLM
:: ... ..: . : : :. :::... .. . . : :.:: ::: ::.:.:::
CCDS55 LFAQTVRVLKKIN-KPGNMIMAFSNLAERIKSLADLQQQEEETYADACDEFLDPIMSTLM
950 960 970 980 990 1000
1120 1130 1140 1150 1160 1170
pF1KB9 TDPVRLPSGTI-MDRSIILRHLLNSPTDPFNRQTLTESMLEPVPELKEQIQAWMREKQNS
::: :::. . .::: : ::::.. ::::::. :: ....: ::::.:: :. :..
CCDS55 CDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQRWLAERKQQ
1010 1020 1030 1040 1050 1060
pF1KB9 DH
CCDS55 KEQLE
>>CCDS8396.1 UBE4A gene_id:9354|Hs108|chr11 (1073 aa)
initn: 610 init1: 326 opt: 738 Z-score: 611.6 bits: 125.0 E(32554): 9.6e-28
Smith-Waterman score: 1059; 27.3% identity (59.2% similar) in 932 aa overlap (294-1169:170-1066)
270 280 290 300 310 320
pF1KB9 GASSLSSLGASGGASNWDSYSDHFTIETCKETDMLNYLIECFDRVGIEEKKAPKMCSQPA
: .. :: ::.:. : :.:. :
CCDS83 ARLLLQDPGNHLINMTSSTTLNLSADRDAGERHIFCYLYSCFQRAKEEITKVPENLLPFA
140 150 160 170 180 190
330 340 350 360 370
pF1KB9 V---SQLLSNIRSQCISHTALVLQGSLTQPRSLQQPSFLVPYMLCRNLPYG----FIQEL
: . .:: :. .. : :. : .:. .. .. . :..:.
CCDS83 VQCRNLTVSNTRTVLLTPEIYVDQNIHEQLVDLMLEAIQGAREYMNKIYFEDVTEFLEEV
200 210 220 230 240 250
380 390 400 410 420 430
pF1KB9 VRTTHQDEEV--FKQIFIPILQGLALAAKECSLDSDYFKYPLMALGELCETKFGKTHPVC
... :::: : ...::... : : : . . :.: .. : . . .
CCDS83 IEALILDEEVRTFPEVMIPVFDILLGRIK----DLELCQILLYAYLDIL-LYFTRQKDMA
260 270 280 290 300 310
440 450 460 470 480 490
pF1KB9 NLVASLRLWLPKSLSPGCGRELQRLSYLGAFFSFSVFAEDDVKVVEK--YFSGPAITL-E
.. .. :: .: :. :. . ::...:.: . . :::. :: .:. . .
CCDS83 KVF--VEYIQPK--DPTNGQMYQK-TLLGVILSISCLLKTP-GVVENHGYFLNPSRSSPQ
320 330 340 350 360
500 510 520 530 540
pF1KB9 NTRVVSQSLQHYLELGRQELFKILHSIL-LNGETREAALSYMAAVVNANMKKAQMQTDD-
. .: ...... .......:...: :. ::.. ::... ..:: .... ...
CCDS83 EIKVQEANIHQFMAQFHEKIYQMLKNLLQLSPETKHCILSWLGNCLHANAGRTKIWANQM
370 380 390 400 410 420
550 560 570 580 590
pF1KB9 -----RLVSTDGFMLNFLWVLQQLSTKI------KLETVDPTYIFHPRCRITLPNDETRV
.. ..:.:.::. .: .: . .: : .::: : . ::: :
CCDS83 PEIFFQMYASDAFFLNLGAALLKLCQPFCKPRSSRLLTFNPTY-----CALKELNDEERK
430 440 450 460 470 480
600 610 620 630 640 650
pF1KB9 --NATMEDVNDWLTELYGDQPPFSEPKFPTECFFLTLHAHHLSILPSCRRYIRRLRAIRE
:. :. . : : : : .::::: . .: ...:. : :. : .
CCDS83 IKNVHMRGL-DKETCLI---PAVQEPKFPQN---YNLVTENLA-LTEYTLYLGFHRLHDQ
490 500 510 520 530
660 670 680 690 700 710
pF1KB9 LNRTVEDLKNNESQWKD-----SPLATRHREMLKRCKTQLKKLVRCKACADAGLLDESFL
. . ..:. . :.: :: : :: :...:. . ... . ..:
CCDS83 MVKINQNLHRLQVAWRDAQQSSSPAADNLRE-------QFERLMTIYLSTKTAMTEPQML
540 550 560 570 580
720 730 740 750 760
pF1KB9 RRCLNFYGLLIQLLLRIL---DPAYP-DITLPLNSDVPKVFAALPEFYVEDVAEFLFFIV
. :::. . ::... . . : ..:.:: : . .: .:::.......::.:.
CCDS83 QNCLNLQVSMAVLLVQLAIGNEGSQPIELTFPL-PDGYSSLAYVPEFFADNLGDFLIFLR
590 600 610 620 630 640
770 780 790 800 810 820
pF1KB9 QYSPQALYEPCT--QDIVMFLVVMLCNQNYIRNPYLVAKLVEVMFMTNPAVQ----PRTQ
... . : . .. :.... . . ..::.: :::.::. . : .. : ..
CCDS83 RFADDILETSADSLEHVLHFITIFTGSIERMKNPHLRAKLAEVLEAVMPHLDQTPNPLVS
650 660 670 680 690 700
830 840 850 860 870
pF1KB9 KFFE---MIENHPLSTKLLVPSLMKFYTDVEHTGATSEFYDKFTIRYHISTIFKSLW---
. :. .. : . .: . .:.: ..:.: :: .: .::. : . :.. .:
CCDS83 SVFHRKRVFCNFQYAPQL-AEALIKVFVDIEFTGDPHQFEQKFNYRRPMYPILRYMWGTD
710 720 730 740 750 760
880 890 900 910 920
pF1KB9 ------QNIAHHGTFMEEFNSGKQFVRYINMLINDTTFLLDESLESLKRIHEVQEEMKNK
...: ... : . :.:..:.:.::. :::::... :..: ..:. :..
CCDS83 TYRESIKDLADYASKNLEAMNPPLFLRFLNLLMNDAIFLLDEAIQYLSKI-KIQQIEKDR
770 780 790 800 810 820
930 940 950 960 970 980
pF1KB9 EQWDQLPRDQQQARQSQLAQDERVSRSYLALATETVDMFHILTKQVQKPFLRPELGPRLA
.::.: . .. ... : . ...: . ...::. . .::..... :..: :. :.
CCDS83 GEWDSLTPEARREKEAGLQMFGQLARFHNIMSNETIGTLAFLTSEIKSLFVHPFLAERII
830 840 850 860 870 880
990 1000 1010 1020 1030 1040
pF1KB9 AMLNFNLQQLCGPKCRDLKVENPEKYGFEPKKLLDQLTDIYLQL-DCARFAKAIADDQRS
.:::. ::.: ::: :::.. .. :.:..:.... :::.: : : .. : ::
CCDS83 SMLNYFLQHLVGPKMGALKVKDFSEFDFKPQQLVSDICTIYLNLGDEENFCATVPKDGRS
890 900 910 920 930 940
1050 1060 1070 1080 1090 1100
pF1KB9 YSKELFEEVISKMRKAGIKSTIAIEKFKLLAEKVEEIVAKNARAEIDYSDAPDEFRDPLM
:: :: ... ..: . : : :. :::... .. . . : :.:: ::: ::.:
CCDS83 YSPTLFAQTVRVLKKIN-KPGNMIMAFSNLAERIKSLADLQQQEEETYADACDEFLDPIM
950 960 970 980 990 1000
1110 1120 1130 1140 1150 1160
pF1KB9 DTLMTDPVRLPSGTI-MDRSIILRHLLNSPTDPFNRQTLTESMLEPVPELKEQIQAWMRE
.::: ::: :::. . .::: : ::::.. ::::::. :: ....: ::::.:: :. :
CCDS83 STLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQRWLAE
1010 1020 1030 1040 1050 1060
1170
pF1KB9 KQNSDH
..
CCDS83 RKQQKEQLE
1070
1173 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 07:02:10 2016 done: Sun Nov 6 07:02:11 2016
Total Scan time: 3.410 Total Display time: 0.150
Function used was FASTA [36.3.4 Apr, 2011]