Result of FASTA (omim) for
pFN21AB9982
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9982, 709 aa
1>>>pF1KB9982 709 - 709 aa - 709 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.9518+/-0.000531; mu= -2.1638+/- 0.033
mean_var=293.7686+/-61.402, 0's: 0 Z-trim(117.0): 57 B-trim: 1919 in 2/52
Lambda= 0.074829
statistics sampled from 28510 (28576) to 28510 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.661), E-opt: 0.2 (0.335), width: 16
Scan time: 12.380
The best scores are: opt bits E(85289)
NP_003137 (OMIM: 604328) FACT complex subunit SSRP ( 709) 4672 518.9 2.7e-146
XP_016873669 (OMIM: 604328) PREDICTED: FACT comple ( 843) 4672 519.0 3e-146
XP_016873670 (OMIM: 604328) PREDICTED: FACT comple ( 609) 2882 325.6 3.5e-88
NP_001124161 (OMIM: 163906) high mobility group pr ( 209) 294 45.8 0.0002
NP_002120 (OMIM: 163906) high mobility group prote ( 209) 294 45.8 0.0002
NP_001124160 (OMIM: 163906) high mobility group pr ( 209) 294 45.8 0.0002
NP_001300821 (OMIM: 163905) high mobility group pr ( 215) 294 45.8 0.00021
NP_002119 (OMIM: 163905) high mobility group prote ( 215) 294 45.8 0.00021
NP_001300822 (OMIM: 163905) high mobility group pr ( 215) 294 45.8 0.00021
NP_005333 (OMIM: 300193,300915) high mobility grou ( 200) 274 43.6 0.00088
NP_001288158 (OMIM: 300193,300915) high mobility g ( 200) 274 43.6 0.00088
NP_001288157 (OMIM: 300193,300915) high mobility g ( 200) 274 43.6 0.00088
NP_001288160 (OMIM: 300193,300915) high mobility g ( 220) 274 43.7 0.00094
XP_011519460 (OMIM: 605534) PREDICTED: high mobili ( 347) 251 41.4 0.0074
NP_060670 (OMIM: 605534) high mobility group prote ( 347) 251 41.4 0.0074
NP_001291433 (OMIM: 605534) high mobility group pr ( 347) 251 41.4 0.0074
XP_011521304 (OMIM: 611416) PREDICTED: TOX high mo ( 553) 253 41.8 0.009
NP_001139660 (OMIM: 611416) TOX high mobility grou ( 571) 253 41.8 0.0092
XP_016878631 (OMIM: 611416) PREDICTED: TOX high mo ( 572) 253 41.8 0.0093
XP_005255949 (OMIM: 611416) PREDICTED: TOX high mo ( 575) 253 41.8 0.0093
NP_001073899 (OMIM: 611416) TOX high mobility grou ( 576) 253 41.8 0.0093
NP_003104 (OMIM: 604585) nuclear autoantigen Sp-10 ( 879) 257 42.4 0.0094
>>NP_003137 (OMIM: 604328) FACT complex subunit SSRP1 [H (709 aa)
initn: 4672 init1: 4672 opt: 4672 Z-score: 2747.5 bits: 518.9 E(85289): 2.7e-146
Smith-Waterman score: 4672; 100.0% identity (100.0% similar) in 709 aa overlap (1-709:1-709)
10 20 30 40 50 60
pF1KB9 MAETLEFNDVYQEVKGSMNDGRLRLSRQGIIFKNSKTGKVDNIQAGELTEGIWRRVALGH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MAETLEFNDVYQEVKGSMNDGRLRLSRQGIIFKNSKTGKVDNIQAGELTEGIWRRVALGH
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 GLKLLTKNGHVYKYDGFRESEFEKLSDFFKTHYRLELMEKDLCVKGWNWGTVKFGGQLLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 GLKLLTKNGHVYKYDGFRESEFEKLSDFFKTHYRLELMEKDLCVKGWNWGTVKFGGQLLS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 FDIGDQPVFEIPLSNVSQCTTGKNEVTLEFHQNDDAEVSLMEVRFYVPPTQEDGVDPVEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 FDIGDQPVFEIPLSNVSQCTTGKNEVTLEFHQNDDAEVSLMEVRFYVPPTQEDGVDPVEA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 FAQNVLSKADVIQATGDAICIFRELQCLTPRGRYDIRIYPTFLHLHGKTFDYKIPYTTVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 FAQNVLSKADVIQATGDAICIFRELQCLTPRGRYDIRIYPTFLHLHGKTFDYKIPYTTVL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 RLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKDEDISLTLNMNEEEVEKRFEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 RLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKDEDISLTLNMNEEEVEKRFEG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 RLTKNMSGSLYEMVSRVMKALVNRKITVPGNFQGHSGAQCITCSYKASSGLLYPLERGFI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 RLTKNMSGSLYEMVSRVMKALVNRKITVPGNFQGHSGAQCITCSYKASSGLLYPLERGFI
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 YVHKPPVHIRFDEISFVNFARGTTTTRSFDFEIETKQGTQYTFSSIEREEYGKLFDFVNA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 YVHKPPVHIRFDEISFVNFARGTTTTRSFDFEIETKQGTQYTFSSIEREEYGKLFDFVNA
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB9 KKLNIKNRGLKEGMNPSYDEYADSDEDQHDAYLERMKEEGKIREENANDSSDDSGEETDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 KKLNIKNRGLKEGMNPSYDEYADSDEDQHDAYLERMKEEGKIREENANDSSDDSGEETDE
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB9 SFNPGEEEEDVAEEFDSNASASSSSNEGDSDRDEKKRKQLKKAKMAKDRKSRKKPVEVKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 SFNPGEEEEDVAEEFDSNASASSSSNEGDSDRDEKKRKQLKKAKMAKDRKSRKKPVEVKK
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB9 GKDPNAPKRPMSAYMLWLNASREKIKSDHPGISITDLSKKAGEIWKGMSKEKKEEWDRKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 GKDPNAPKRPMSAYMLWLNASREKIKSDHPGISITDLSKKAGEIWKGMSKEKKEEWDRKA
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB9 EDARRDYEKAMKEYEGGRGESSKRDKSKKKKKVKVKMEKKSTPSRGSSSKSSSRQLSESF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 EDARRDYEKAMKEYEGGRGESSKRDKSKKKKKVKVKMEKKSTPSRGSSSKSSSRQLSESF
610 620 630 640 650 660
670 680 690 700
pF1KB9 KSKEFVSSDESSSGENKSKKKRRRSEDSEEEELASTPPSSEDSASGSDE
:::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 KSKEFVSSDESSSGENKSKKKRRRSEDSEEEELASTPPSSEDSASGSDE
670 680 690 700
>>XP_016873669 (OMIM: 604328) PREDICTED: FACT complex su (843 aa)
initn: 4672 init1: 4672 opt: 4672 Z-score: 2746.5 bits: 519.0 E(85289): 3e-146
Smith-Waterman score: 4672; 100.0% identity (100.0% similar) in 709 aa overlap (1-709:135-843)
10 20 30
pF1KB9 MAETLEFNDVYQEVKGSMNDGRLRLSRQGI
::::::::::::::::::::::::::::::
XP_016 HSGVGAQLPVYLVSLVQPGALPRPPQAGVDMAETLEFNDVYQEVKGSMNDGRLRLSRQGI
110 120 130 140 150 160
40 50 60 70 80 90
pF1KB9 IFKNSKTGKVDNIQAGELTEGIWRRVALGHGLKLLTKNGHVYKYDGFRESEFEKLSDFFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IFKNSKTGKVDNIQAGELTEGIWRRVALGHGLKLLTKNGHVYKYDGFRESEFEKLSDFFK
170 180 190 200 210 220
100 110 120 130 140 150
pF1KB9 THYRLELMEKDLCVKGWNWGTVKFGGQLLSFDIGDQPVFEIPLSNVSQCTTGKNEVTLEF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 THYRLELMEKDLCVKGWNWGTVKFGGQLLSFDIGDQPVFEIPLSNVSQCTTGKNEVTLEF
230 240 250 260 270 280
160 170 180 190 200 210
pF1KB9 HQNDDAEVSLMEVRFYVPPTQEDGVDPVEAFAQNVLSKADVIQATGDAICIFRELQCLTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HQNDDAEVSLMEVRFYVPPTQEDGVDPVEAFAQNVLSKADVIQATGDAICIFRELQCLTP
290 300 310 320 330 340
220 230 240 250 260 270
pF1KB9 RGRYDIRIYPTFLHLHGKTFDYKIPYTTVLRLFLLPHKDQRQMFFVISLDPPIKQGQTRY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RGRYDIRIYPTFLHLHGKTFDYKIPYTTVLRLFLLPHKDQRQMFFVISLDPPIKQGQTRY
350 360 370 380 390 400
280 290 300 310 320 330
pF1KB9 HFLILLFSKDEDISLTLNMNEEEVEKRFEGRLTKNMSGSLYEMVSRVMKALVNRKITVPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HFLILLFSKDEDISLTLNMNEEEVEKRFEGRLTKNMSGSLYEMVSRVMKALVNRKITVPG
410 420 430 440 450 460
340 350 360 370 380 390
pF1KB9 NFQGHSGAQCITCSYKASSGLLYPLERGFIYVHKPPVHIRFDEISFVNFARGTTTTRSFD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NFQGHSGAQCITCSYKASSGLLYPLERGFIYVHKPPVHIRFDEISFVNFARGTTTTRSFD
470 480 490 500 510 520
400 410 420 430 440 450
pF1KB9 FEIETKQGTQYTFSSIEREEYGKLFDFVNAKKLNIKNRGLKEGMNPSYDEYADSDEDQHD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FEIETKQGTQYTFSSIEREEYGKLFDFVNAKKLNIKNRGLKEGMNPSYDEYADSDEDQHD
530 540 550 560 570 580
460 470 480 490 500 510
pF1KB9 AYLERMKEEGKIREENANDSSDDSGEETDESFNPGEEEEDVAEEFDSNASASSSSNEGDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AYLERMKEEGKIREENANDSSDDSGEETDESFNPGEEEEDVAEEFDSNASASSSSNEGDS
590 600 610 620 630 640
520 530 540 550 560 570
pF1KB9 DRDEKKRKQLKKAKMAKDRKSRKKPVEVKKGKDPNAPKRPMSAYMLWLNASREKIKSDHP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DRDEKKRKQLKKAKMAKDRKSRKKPVEVKKGKDPNAPKRPMSAYMLWLNASREKIKSDHP
650 660 670 680 690 700
580 590 600 610 620 630
pF1KB9 GISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARRDYEKAMKEYEGGRGESSKRDKSKKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARRDYEKAMKEYEGGRGESSKRDKSKKK
710 720 730 740 750 760
640 650 660 670 680 690
pF1KB9 KKVKVKMEKKSTPSRGSSSKSSSRQLSESFKSKEFVSSDESSSGENKSKKKRRRSEDSEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KKVKVKMEKKSTPSRGSSSKSSSRQLSESFKSKEFVSSDESSSGENKSKKKRRRSEDSEE
770 780 790 800 810 820
700
pF1KB9 EELASTPPSSEDSASGSDE
:::::::::::::::::::
XP_016 EELASTPPSSEDSASGSDE
830 840
>>XP_016873670 (OMIM: 604328) PREDICTED: FACT complex su (609 aa)
initn: 2882 init1: 2882 opt: 2882 Z-score: 1704.0 bits: 325.6 E(85289): 3.5e-88
Smith-Waterman score: 2882; 100.0% identity (100.0% similar) in 432 aa overlap (1-432:135-566)
10 20 30
pF1KB9 MAETLEFNDVYQEVKGSMNDGRLRLSRQGI
::::::::::::::::::::::::::::::
XP_016 HSGVGAQLPVYLVSLVQPGALPRPPQAGVDMAETLEFNDVYQEVKGSMNDGRLRLSRQGI
110 120 130 140 150 160
40 50 60 70 80 90
pF1KB9 IFKNSKTGKVDNIQAGELTEGIWRRVALGHGLKLLTKNGHVYKYDGFRESEFEKLSDFFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IFKNSKTGKVDNIQAGELTEGIWRRVALGHGLKLLTKNGHVYKYDGFRESEFEKLSDFFK
170 180 190 200 210 220
100 110 120 130 140 150
pF1KB9 THYRLELMEKDLCVKGWNWGTVKFGGQLLSFDIGDQPVFEIPLSNVSQCTTGKNEVTLEF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 THYRLELMEKDLCVKGWNWGTVKFGGQLLSFDIGDQPVFEIPLSNVSQCTTGKNEVTLEF
230 240 250 260 270 280
160 170 180 190 200 210
pF1KB9 HQNDDAEVSLMEVRFYVPPTQEDGVDPVEAFAQNVLSKADVIQATGDAICIFRELQCLTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HQNDDAEVSLMEVRFYVPPTQEDGVDPVEAFAQNVLSKADVIQATGDAICIFRELQCLTP
290 300 310 320 330 340
220 230 240 250 260 270
pF1KB9 RGRYDIRIYPTFLHLHGKTFDYKIPYTTVLRLFLLPHKDQRQMFFVISLDPPIKQGQTRY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RGRYDIRIYPTFLHLHGKTFDYKIPYTTVLRLFLLPHKDQRQMFFVISLDPPIKQGQTRY
350 360 370 380 390 400
280 290 300 310 320 330
pF1KB9 HFLILLFSKDEDISLTLNMNEEEVEKRFEGRLTKNMSGSLYEMVSRVMKALVNRKITVPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HFLILLFSKDEDISLTLNMNEEEVEKRFEGRLTKNMSGSLYEMVSRVMKALVNRKITVPG
410 420 430 440 450 460
340 350 360 370 380 390
pF1KB9 NFQGHSGAQCITCSYKASSGLLYPLERGFIYVHKPPVHIRFDEISFVNFARGTTTTRSFD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NFQGHSGAQCITCSYKASSGLLYPLERGFIYVHKPPVHIRFDEISFVNFARGTTTTRSFD
470 480 490 500 510 520
400 410 420 430 440 450
pF1KB9 FEIETKQGTQYTFSSIEREEYGKLFDFVNAKKLNIKNRGLKEGMNPSYDEYADSDEDQHD
::::::::::::::::::::::::::::::::::::::::::
XP_016 FEIETKQGTQYTFSSIEREEYGKLFDFVNAKKLNIKNRGLKEKKEVRVTLSPSWCRFPLH
530 540 550 560 570 580
460 470 480 490 500 510
pF1KB9 AYLERMKEEGKIREENANDSSDDSGEETDESFNPGEEEEDVAEEFDSNASASSSSNEGDS
XP_016 DLRPVYAAPQEPPVGLGEGGAWGLD
590 600
>>NP_001124161 (OMIM: 163906) high mobility group protei (209 aa)
initn: 370 init1: 248 opt: 294 Z-score: 200.3 bits: 45.8 E(85289): 0.0002
Smith-Waterman score: 294; 35.6% identity (63.1% similar) in 160 aa overlap (479-632:33-184)
450 460 470 480 490 500
pF1KB9 HDAYLERMKEEGKIREENANDSSDDSGEETDESFNPGEEEEDVAEEFDSNASASSSSNEG
: : : .: . .:.. . .. .:. :
NP_001 KGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFED
10 20 30 40 50 60
510 520 530 540 550 560
pF1KB9 DSDRDEKKRKQLKKAKMAKDRKSRKKPVEVKKGK--DPNAPKRPMSAYMLWLNASREKIK
. : ::.. .. :. : :::: :::::::: ::..:. . : :::
NP_001 MAKSD--------KARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIK
70 80 90 100 110
570 580 590 600 610 620
pF1KB9 SDHPGISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARRDYEKAMKEYEG-GRGESSKRD
:.:::.:: : .:: ::.:. .: . :. ...:: .. ::: . :.. :..:..:.
NP_001 SEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKG
120 130 140 150 160 170
630 640 650 660 670 680
pF1KB9 KSK---KKKKVKVKMEKKSTPSRGSSSKSSSRQLSESFKSKEFVSSDESSSGENKSKKKR
.. .:::
NP_001 PGRPTGSKKKNEPEDEEEEEEEEDEDEEEEDEDEE
180 190 200
>>NP_002120 (OMIM: 163906) high mobility group protein B (209 aa)
initn: 370 init1: 248 opt: 294 Z-score: 200.3 bits: 45.8 E(85289): 0.0002
Smith-Waterman score: 294; 35.6% identity (63.1% similar) in 160 aa overlap (479-632:33-184)
450 460 470 480 490 500
pF1KB9 HDAYLERMKEEGKIREENANDSSDDSGEETDESFNPGEEEEDVAEEFDSNASASSSSNEG
: : : .: . .:.. . .. .:. :
NP_002 KGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFED
10 20 30 40 50 60
510 520 530 540 550 560
pF1KB9 DSDRDEKKRKQLKKAKMAKDRKSRKKPVEVKKGK--DPNAPKRPMSAYMLWLNASREKIK
. : ::.. .. :. : :::: :::::::: ::..:. . : :::
NP_002 MAKSD--------KARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIK
70 80 90 100 110
570 580 590 600 610 620
pF1KB9 SDHPGISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARRDYEKAMKEYEG-GRGESSKRD
:.:::.:: : .:: ::.:. .: . :. ...:: .. ::: . :.. :..:..:.
NP_002 SEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKG
120 130 140 150 160 170
630 640 650 660 670 680
pF1KB9 KSK---KKKKVKVKMEKKSTPSRGSSSKSSSRQLSESFKSKEFVSSDESSSGENKSKKKR
.. .:::
NP_002 PGRPTGSKKKNEPEDEEEEEEEEDEDEEEEDEDEE
180 190 200
>>NP_001124160 (OMIM: 163906) high mobility group protei (209 aa)
initn: 370 init1: 248 opt: 294 Z-score: 200.3 bits: 45.8 E(85289): 0.0002
Smith-Waterman score: 294; 35.6% identity (63.1% similar) in 160 aa overlap (479-632:33-184)
450 460 470 480 490 500
pF1KB9 HDAYLERMKEEGKIREENANDSSDDSGEETDESFNPGEEEEDVAEEFDSNASASSSSNEG
: : : .: . .:.. . .. .:. :
NP_001 KGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFED
10 20 30 40 50 60
510 520 530 540 550 560
pF1KB9 DSDRDEKKRKQLKKAKMAKDRKSRKKPVEVKKGK--DPNAPKRPMSAYMLWLNASREKIK
. : ::.. .. :. : :::: :::::::: ::..:. . : :::
NP_001 MAKSD--------KARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIK
70 80 90 100 110
570 580 590 600 610 620
pF1KB9 SDHPGISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARRDYEKAMKEYEG-GRGESSKRD
:.:::.:: : .:: ::.:. .: . :. ...:: .. ::: . :.. :..:..:.
NP_001 SEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKG
120 130 140 150 160 170
630 640 650 660 670 680
pF1KB9 KSK---KKKKVKVKMEKKSTPSRGSSSKSSSRQLSESFKSKEFVSSDESSSGENKSKKKR
.. .:::
NP_001 PGRPTGSKKKNEPEDEEEEEEEEDEDEEEEDEDEE
180 190 200
>>NP_001300821 (OMIM: 163905) high mobility group protei (215 aa)
initn: 383 init1: 253 opt: 294 Z-score: 200.1 bits: 45.8 E(85289): 0.00021
Smith-Waterman score: 294; 35.6% identity (65.0% similar) in 160 aa overlap (479-632:33-186)
450 460 470 480 490 500
pF1KB9 HDAYLERMKEEGKIREENANDSSDDSGEETDESFNPGEEEEDVAEEFDSNASASSSSNEG
: : : .: . .:.. . ::. ...
NP_001 KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKT-MSAKEKGKFE
10 20 30 40 50 60
510 520 530 540 550 560
pF1KB9 DSDRDEKKRKQLKKAKMAKDRKSRKKPVEVKKGKDPNAPKRPMSAYMLWLNASREKIKSD
: . .: : . .. : :.. : :: ::::::::: ::..:. . : :::..
NP_001 DMAKADKARYE-REMKTYIPPKGETK----KKFKDPNAPKRPPSAFFLFCSEYRPKIKGE
70 80 90 100 110
570 580 590 600 610 620
pF1KB9 HPGISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARRDYEKAMKEYEG-GRGESSKR---
:::.:: :..:: ::.:.. . . :. ...:: .. ::: . :.. :. ...:.
NP_001 HPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVV
120 130 140 150 160 170
630 640 650 660 670 680
pF1KB9 --DKSKKKKKVKVKMEKKSTPSRGSSSKSSSRQLSESFKSKEFVSSDESSSGENKSKKKR
.::::::.
NP_001 KAEKSKKKKEEEEDEEDEEDEEEEEDEEDEDEEEDDDDE
180 190 200 210
>>NP_002119 (OMIM: 163905) high mobility group protein B (215 aa)
initn: 383 init1: 253 opt: 294 Z-score: 200.1 bits: 45.8 E(85289): 0.00021
Smith-Waterman score: 294; 35.6% identity (65.0% similar) in 160 aa overlap (479-632:33-186)
450 460 470 480 490 500
pF1KB9 HDAYLERMKEEGKIREENANDSSDDSGEETDESFNPGEEEEDVAEEFDSNASASSSSNEG
: : : .: . .:.. . ::. ...
NP_002 KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKT-MSAKEKGKFE
10 20 30 40 50 60
510 520 530 540 550 560
pF1KB9 DSDRDEKKRKQLKKAKMAKDRKSRKKPVEVKKGKDPNAPKRPMSAYMLWLNASREKIKSD
: . .: : . .. : :.. : :: ::::::::: ::..:. . : :::..
NP_002 DMAKADKARYE-REMKTYIPPKGETK----KKFKDPNAPKRPPSAFFLFCSEYRPKIKGE
70 80 90 100 110
570 580 590 600 610 620
pF1KB9 HPGISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARRDYEKAMKEYEG-GRGESSKR---
:::.:: :..:: ::.:.. . . :. ...:: .. ::: . :.. :. ...:.
NP_002 HPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVV
120 130 140 150 160 170
630 640 650 660 670 680
pF1KB9 --DKSKKKKKVKVKMEKKSTPSRGSSSKSSSRQLSESFKSKEFVSSDESSSGENKSKKKR
.::::::.
NP_002 KAEKSKKKKEEEEDEEDEEDEEEEEDEEDEDEEEDDDDE
180 190 200 210
>>NP_001300822 (OMIM: 163905) high mobility group protei (215 aa)
initn: 383 init1: 253 opt: 294 Z-score: 200.1 bits: 45.8 E(85289): 0.00021
Smith-Waterman score: 294; 35.6% identity (65.0% similar) in 160 aa overlap (479-632:33-186)
450 460 470 480 490 500
pF1KB9 HDAYLERMKEEGKIREENANDSSDDSGEETDESFNPGEEEEDVAEEFDSNASASSSSNEG
: : : .: . .:.. . ::. ...
NP_001 KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKT-MSAKEKGKFE
10 20 30 40 50 60
510 520 530 540 550 560
pF1KB9 DSDRDEKKRKQLKKAKMAKDRKSRKKPVEVKKGKDPNAPKRPMSAYMLWLNASREKIKSD
: . .: : . .. : :.. : :: ::::::::: ::..:. . : :::..
NP_001 DMAKADKARYE-REMKTYIPPKGETK----KKFKDPNAPKRPPSAFFLFCSEYRPKIKGE
70 80 90 100 110
570 580 590 600 610 620
pF1KB9 HPGISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARRDYEKAMKEYEG-GRGESSKR---
:::.:: :..:: ::.:.. . . :. ...:: .. ::: . :.. :. ...:.
NP_001 HPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVV
120 130 140 150 160 170
630 640 650 660 670 680
pF1KB9 --DKSKKKKKVKVKMEKKSTPSRGSSSKSSSRQLSESFKSKEFVSSDESSSGENKSKKKR
.::::::.
NP_001 KAEKSKKKKEEEEDEEDEEDEEEEEDEEDEDEEEDDDDE
180 190 200 210
>>NP_005333 (OMIM: 300193,300915) high mobility group pr (200 aa)
initn: 442 init1: 241 opt: 274 Z-score: 188.9 bits: 43.6 E(85289): 0.00088
Smith-Waterman score: 274; 37.0% identity (68.9% similar) in 135 aa overlap (510-640:53-187)
480 490 500 510 520 530
pF1KB9 ESFNPGEEEEDVAEEFDSNASASSSSNEGDSDRDEKKRKQLKKA-KMAKDRKSRKK-PVE
: ....: .. :: :. ::. . :..
NP_005 CREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDREMKDYGPAK
30 40 50 60 70 80
540 550 560 570 580 590
pF1KB9 V-KKGKDPNAPKRPMSAYMLWLNASREKIKSDHPGISITDLSKKAGEIWKGMSKEKKEEW
:: ::::::::: :...:. . : :::: .::::: :..:: ::.:.... .:. .
NP_005 GGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPY
90 100 110 120 130 140
600 610 620 630 640 650
pF1KB9 DRKAEDARRDYEKAMKEYEG-GRGESSKRDKSKKKKKVKVKMEKKSTPSRGSSSKSSSRQ
:: .. ::: . .:.. :. ...: . .:::. . :..
NP_005 ITKAAKLKEKYEKDVADYKSKGKFDGAKGPAKVARKKVEEEDEEEEEEEEEEEEEEDE
150 160 170 180 190 200
660 670 680 690 700
pF1KB9 LSESFKSKEFVSSDESSSGENKSKKKRRRSEDSEEEELASTPPSSEDSASGSDE
709 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 02:23:41 2016 done: Mon Nov 7 02:23:43 2016
Total Scan time: 12.380 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]