Result of FASTA (omim) for
pFN21AB9976
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9976, 707 aa
1>>>pF1KB9976 707 - 707 aa - 707 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 18.1408+/-0.000538; mu= -32.9225+/- 0.034
mean_var=1145.0702+/-233.577, 0's: 0 Z-trim(127.1): 205 B-trim: 0 in 0/62
Lambda= 0.037902
statistics sampled from 54327 (54645) to 54327 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.842), E-opt: 0.2 (0.641), width: 16
Scan time: 16.170
The best scores are: opt bits E(85289)
XP_005271169 (OMIM: 605199) PREDICTED: splicing fa ( 707) 5111 295.2 6e-79
XP_016857543 (OMIM: 605199) PREDICTED: splicing fa ( 707) 5111 295.2 6e-79
XP_016857542 (OMIM: 605199) PREDICTED: splicing fa ( 707) 5111 295.2 6e-79
NP_005057 (OMIM: 605199) splicing factor, proline- ( 707) 5111 295.2 6e-79
XP_005271170 (OMIM: 605199) PREDICTED: splicing fa ( 707) 5111 295.2 6e-79
XP_005271172 (OMIM: 605199) PREDICTED: splicing fa ( 669) 4776 276.8 1.9e-73
XP_011540252 (OMIM: 605199) PREDICTED: splicing fa ( 679) 4776 276.8 1.9e-73
XP_006719907 (OMIM: 612408) PREDICTED: paraspeckle ( 523) 1783 113.1 2.9e-24
NP_001035879 (OMIM: 612408) paraspeckle component ( 523) 1783 113.1 2.9e-24
XP_011533439 (OMIM: 612408) PREDICTED: paraspeckle ( 469) 1758 111.6 7e-24
NP_031389 (OMIM: 300084,300967) non-POU domain-con ( 471) 1716 109.3 3.4e-23
NP_001138881 (OMIM: 300084,300967) non-POU domain- ( 471) 1716 109.3 3.4e-23
NP_001138880 (OMIM: 300084,300967) non-POU domain- ( 471) 1716 109.3 3.4e-23
XP_011533444 (OMIM: 612408) PREDICTED: paraspeckle ( 406) 1645 105.4 4.6e-22
XP_016876139 (OMIM: 612408) PREDICTED: paraspeckle ( 393) 1638 105.0 5.8e-22
XP_011533443 (OMIM: 612408) PREDICTED: paraspeckle ( 409) 1638 105.0 6e-22
XP_011533442 (OMIM: 612408) PREDICTED: paraspeckle ( 417) 1638 105.0 6.1e-22
XP_011533441 (OMIM: 612408) PREDICTED: paraspeckle ( 417) 1638 105.0 6.1e-22
XP_011533440 (OMIM: 612408) PREDICTED: paraspeckle ( 447) 1638 105.1 6.4e-22
NP_001138882 (OMIM: 300084,300967) non-POU domain- ( 382) 1463 95.4 4.4e-19
NP_006239 (OMIM: 168810) basic salivary proline-ri ( 416) 538 44.9 0.00078
NP_005030 (OMIM: 180989) basic salivary proline-ri ( 331) 532 44.4 0.00083
NP_006240 (OMIM: 168840) basic salivary proline-ri ( 309) 520 43.8 0.0013
XP_016857329 (OMIM: 606373,616193) PREDICTED: form (1102) 514 44.0 0.0038
XP_016857330 (OMIM: 606373,616193) PREDICTED: form (1102) 514 44.0 0.0038
XP_016857328 (OMIM: 606373,616193) PREDICTED: form (1159) 514 44.0 0.0039
XP_011542539 (OMIM: 606373,616193) PREDICTED: form (1360) 514 44.1 0.0044
XP_016857327 (OMIM: 606373,616193) PREDICTED: form (1384) 514 44.1 0.0044
XP_016857326 (OMIM: 606373,616193) PREDICTED: form (1417) 514 44.1 0.0045
NP_064450 (OMIM: 606373,616193) formin-2 isoform 2 (1722) 514 44.2 0.0051
NP_001292353 (OMIM: 606373,616193) formin-2 isofor (1726) 514 44.2 0.0051
>>XP_005271169 (OMIM: 605199) PREDICTED: splicing factor (707 aa)
initn: 5111 init1: 5111 opt: 5111 Z-score: 1538.4 bits: 295.2 E(85289): 6e-79
Smith-Waterman score: 5111; 100.0% identity (100.0% similar) in 707 aa overlap (1-707:1-707)
10 20 30 40 50 60
pF1KB9 MSRDRFRSRGGGGGGFHRRGGGGGRGGLHDFRSPPPGMGLNQNRGPMGPGPGQSGPKPPI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MSRDRFRSRGGGGGGFHRRGGGGGRGGLHDFRSPPPGMGLNQNRGPMGPGPGQSGPKPPI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 PPPPPHQQQQQPPPQQPPPQQPPPHQPPPHPQPHQQQQPPPPPQDSSKPVVAQGPGPAPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PPPPPHQQQQQPPPQQPPPQQPPPHQPPPHPQPHQQQQPPPPPQDSSKPVVAQGPGPAPG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 VGSAPPASSSAPPATPPTSGAPPGSGPGPTPTPPPAVTSAPPGAPPPTPPSSGVPTTPPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VGSAPPASSSAPPATPPTSGAPPGSGPGPTPTPPPAVTSAPPGAPPPTPPSSGVPTTPPQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 AGGPPPPPAAVPGPGPGPKQGPGPGGPKGGKMPGGPKPGGGPGLSTPGGHPKPPHRGGGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AGGPPPPPAAVPGPGPGPKQGPGPGGPKGGKMPGGPKPGGGPGLSTPGGHPKPPHRGGGE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 PRGGRQHHPPYHQQHHQGPPPGGPGGRSEEKISDSEGFKANLSLLRRPGEKTYTQRCRLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PRGGRQHHPPYHQQHHQGPPPGGPGGRSEEKISDSEGFKANLSLLRRPGEKTYTQRCRLF
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 VGNLPADITEDEFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIAKAELDDTPMRGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VGNLPADITEDEFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIAKAELDDTPMRGR
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 QLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTGKGIVEFAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTGKGIVEFAS
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB9 KPAARKAFERCSEGVFLLTTTPRPVIVEPLEQLDDEDGLPEKLAQKNPMYQKERETPPRF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KPAARKAFERCSEGVFLLTTTPRPVIVEPLEQLDDEDGLPEKLAQKNPMYQKERETPPRF
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB9 AQHGTFEYEYSQRWKSLDEMEKQQREQVEKNMKDAKDKLESEMEDAYHEHQANLLRQDLM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AQHGTFEYEYSQRWKSLDEMEKQQREQVEKNMKDAKDKLESEMEDAYHEHQANLLRQDLM
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB9 RRQEELRRMEELHNQEMQKRKEMQLRQEEERRRREEEMMIRQREMEEQMRRQREESYSRM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RRQEELRRMEELHNQEMQKRKEMQLRQEEERRRREEEMMIRQREMEEQMRRQREESYSRM
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB9 GYMDPRERDMRMGGGGAMNMGDPYGSGGQKFPPLGGGGGIGYEANPGVPPATMSGSMMGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GYMDPRERDMRMGGGGAMNMGDPYGSGGQKFPPLGGGGGIGYEANPGVPPATMSGSMMGS
610 620 630 640 650 660
670 680 690 700
pF1KB9 DMRTERFGQGGAGPVGGQGPRGMGPGTPAGYGRGREEYEGPNKKPRF
:::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DMRTERFGQGGAGPVGGQGPRGMGPGTPAGYGRGREEYEGPNKKPRF
670 680 690 700
>>XP_016857543 (OMIM: 605199) PREDICTED: splicing factor (707 aa)
initn: 5111 init1: 5111 opt: 5111 Z-score: 1538.4 bits: 295.2 E(85289): 6e-79
Smith-Waterman score: 5111; 100.0% identity (100.0% similar) in 707 aa overlap (1-707:1-707)
10 20 30 40 50 60
pF1KB9 MSRDRFRSRGGGGGGFHRRGGGGGRGGLHDFRSPPPGMGLNQNRGPMGPGPGQSGPKPPI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSRDRFRSRGGGGGGFHRRGGGGGRGGLHDFRSPPPGMGLNQNRGPMGPGPGQSGPKPPI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 PPPPPHQQQQQPPPQQPPPQQPPPHQPPPHPQPHQQQQPPPPPQDSSKPVVAQGPGPAPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PPPPPHQQQQQPPPQQPPPQQPPPHQPPPHPQPHQQQQPPPPPQDSSKPVVAQGPGPAPG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 VGSAPPASSSAPPATPPTSGAPPGSGPGPTPTPPPAVTSAPPGAPPPTPPSSGVPTTPPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VGSAPPASSSAPPATPPTSGAPPGSGPGPTPTPPPAVTSAPPGAPPPTPPSSGVPTTPPQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 AGGPPPPPAAVPGPGPGPKQGPGPGGPKGGKMPGGPKPGGGPGLSTPGGHPKPPHRGGGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AGGPPPPPAAVPGPGPGPKQGPGPGGPKGGKMPGGPKPGGGPGLSTPGGHPKPPHRGGGE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 PRGGRQHHPPYHQQHHQGPPPGGPGGRSEEKISDSEGFKANLSLLRRPGEKTYTQRCRLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PRGGRQHHPPYHQQHHQGPPPGGPGGRSEEKISDSEGFKANLSLLRRPGEKTYTQRCRLF
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 VGNLPADITEDEFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIAKAELDDTPMRGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VGNLPADITEDEFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIAKAELDDTPMRGR
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 QLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTGKGIVEFAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTGKGIVEFAS
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB9 KPAARKAFERCSEGVFLLTTTPRPVIVEPLEQLDDEDGLPEKLAQKNPMYQKERETPPRF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KPAARKAFERCSEGVFLLTTTPRPVIVEPLEQLDDEDGLPEKLAQKNPMYQKERETPPRF
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB9 AQHGTFEYEYSQRWKSLDEMEKQQREQVEKNMKDAKDKLESEMEDAYHEHQANLLRQDLM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AQHGTFEYEYSQRWKSLDEMEKQQREQVEKNMKDAKDKLESEMEDAYHEHQANLLRQDLM
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB9 RRQEELRRMEELHNQEMQKRKEMQLRQEEERRRREEEMMIRQREMEEQMRRQREESYSRM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RRQEELRRMEELHNQEMQKRKEMQLRQEEERRRREEEMMIRQREMEEQMRRQREESYSRM
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB9 GYMDPRERDMRMGGGGAMNMGDPYGSGGQKFPPLGGGGGIGYEANPGVPPATMSGSMMGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GYMDPRERDMRMGGGGAMNMGDPYGSGGQKFPPLGGGGGIGYEANPGVPPATMSGSMMGS
610 620 630 640 650 660
670 680 690 700
pF1KB9 DMRTERFGQGGAGPVGGQGPRGMGPGTPAGYGRGREEYEGPNKKPRF
:::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DMRTERFGQGGAGPVGGQGPRGMGPGTPAGYGRGREEYEGPNKKPRF
670 680 690 700
>>XP_016857542 (OMIM: 605199) PREDICTED: splicing factor (707 aa)
initn: 5111 init1: 5111 opt: 5111 Z-score: 1538.4 bits: 295.2 E(85289): 6e-79
Smith-Waterman score: 5111; 100.0% identity (100.0% similar) in 707 aa overlap (1-707:1-707)
10 20 30 40 50 60
pF1KB9 MSRDRFRSRGGGGGGFHRRGGGGGRGGLHDFRSPPPGMGLNQNRGPMGPGPGQSGPKPPI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSRDRFRSRGGGGGGFHRRGGGGGRGGLHDFRSPPPGMGLNQNRGPMGPGPGQSGPKPPI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 PPPPPHQQQQQPPPQQPPPQQPPPHQPPPHPQPHQQQQPPPPPQDSSKPVVAQGPGPAPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PPPPPHQQQQQPPPQQPPPQQPPPHQPPPHPQPHQQQQPPPPPQDSSKPVVAQGPGPAPG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 VGSAPPASSSAPPATPPTSGAPPGSGPGPTPTPPPAVTSAPPGAPPPTPPSSGVPTTPPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VGSAPPASSSAPPATPPTSGAPPGSGPGPTPTPPPAVTSAPPGAPPPTPPSSGVPTTPPQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 AGGPPPPPAAVPGPGPGPKQGPGPGGPKGGKMPGGPKPGGGPGLSTPGGHPKPPHRGGGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AGGPPPPPAAVPGPGPGPKQGPGPGGPKGGKMPGGPKPGGGPGLSTPGGHPKPPHRGGGE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 PRGGRQHHPPYHQQHHQGPPPGGPGGRSEEKISDSEGFKANLSLLRRPGEKTYTQRCRLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PRGGRQHHPPYHQQHHQGPPPGGPGGRSEEKISDSEGFKANLSLLRRPGEKTYTQRCRLF
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 VGNLPADITEDEFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIAKAELDDTPMRGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VGNLPADITEDEFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIAKAELDDTPMRGR
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 QLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTGKGIVEFAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTGKGIVEFAS
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB9 KPAARKAFERCSEGVFLLTTTPRPVIVEPLEQLDDEDGLPEKLAQKNPMYQKERETPPRF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KPAARKAFERCSEGVFLLTTTPRPVIVEPLEQLDDEDGLPEKLAQKNPMYQKERETPPRF
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB9 AQHGTFEYEYSQRWKSLDEMEKQQREQVEKNMKDAKDKLESEMEDAYHEHQANLLRQDLM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AQHGTFEYEYSQRWKSLDEMEKQQREQVEKNMKDAKDKLESEMEDAYHEHQANLLRQDLM
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB9 RRQEELRRMEELHNQEMQKRKEMQLRQEEERRRREEEMMIRQREMEEQMRRQREESYSRM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RRQEELRRMEELHNQEMQKRKEMQLRQEEERRRREEEMMIRQREMEEQMRRQREESYSRM
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB9 GYMDPRERDMRMGGGGAMNMGDPYGSGGQKFPPLGGGGGIGYEANPGVPPATMSGSMMGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GYMDPRERDMRMGGGGAMNMGDPYGSGGQKFPPLGGGGGIGYEANPGVPPATMSGSMMGS
610 620 630 640 650 660
670 680 690 700
pF1KB9 DMRTERFGQGGAGPVGGQGPRGMGPGTPAGYGRGREEYEGPNKKPRF
:::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DMRTERFGQGGAGPVGGQGPRGMGPGTPAGYGRGREEYEGPNKKPRF
670 680 690 700
>>NP_005057 (OMIM: 605199) splicing factor, proline- and (707 aa)
initn: 5111 init1: 5111 opt: 5111 Z-score: 1538.4 bits: 295.2 E(85289): 6e-79
Smith-Waterman score: 5111; 100.0% identity (100.0% similar) in 707 aa overlap (1-707:1-707)
10 20 30 40 50 60
pF1KB9 MSRDRFRSRGGGGGGFHRRGGGGGRGGLHDFRSPPPGMGLNQNRGPMGPGPGQSGPKPPI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MSRDRFRSRGGGGGGFHRRGGGGGRGGLHDFRSPPPGMGLNQNRGPMGPGPGQSGPKPPI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 PPPPPHQQQQQPPPQQPPPQQPPPHQPPPHPQPHQQQQPPPPPQDSSKPVVAQGPGPAPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 PPPPPHQQQQQPPPQQPPPQQPPPHQPPPHPQPHQQQQPPPPPQDSSKPVVAQGPGPAPG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 VGSAPPASSSAPPATPPTSGAPPGSGPGPTPTPPPAVTSAPPGAPPPTPPSSGVPTTPPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 VGSAPPASSSAPPATPPTSGAPPGSGPGPTPTPPPAVTSAPPGAPPPTPPSSGVPTTPPQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 AGGPPPPPAAVPGPGPGPKQGPGPGGPKGGKMPGGPKPGGGPGLSTPGGHPKPPHRGGGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 AGGPPPPPAAVPGPGPGPKQGPGPGGPKGGKMPGGPKPGGGPGLSTPGGHPKPPHRGGGE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 PRGGRQHHPPYHQQHHQGPPPGGPGGRSEEKISDSEGFKANLSLLRRPGEKTYTQRCRLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 PRGGRQHHPPYHQQHHQGPPPGGPGGRSEEKISDSEGFKANLSLLRRPGEKTYTQRCRLF
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 VGNLPADITEDEFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIAKAELDDTPMRGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 VGNLPADITEDEFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIAKAELDDTPMRGR
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 QLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTGKGIVEFAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 QLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTGKGIVEFAS
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB9 KPAARKAFERCSEGVFLLTTTPRPVIVEPLEQLDDEDGLPEKLAQKNPMYQKERETPPRF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 KPAARKAFERCSEGVFLLTTTPRPVIVEPLEQLDDEDGLPEKLAQKNPMYQKERETPPRF
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB9 AQHGTFEYEYSQRWKSLDEMEKQQREQVEKNMKDAKDKLESEMEDAYHEHQANLLRQDLM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 AQHGTFEYEYSQRWKSLDEMEKQQREQVEKNMKDAKDKLESEMEDAYHEHQANLLRQDLM
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB9 RRQEELRRMEELHNQEMQKRKEMQLRQEEERRRREEEMMIRQREMEEQMRRQREESYSRM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 RRQEELRRMEELHNQEMQKRKEMQLRQEEERRRREEEMMIRQREMEEQMRRQREESYSRM
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB9 GYMDPRERDMRMGGGGAMNMGDPYGSGGQKFPPLGGGGGIGYEANPGVPPATMSGSMMGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 GYMDPRERDMRMGGGGAMNMGDPYGSGGQKFPPLGGGGGIGYEANPGVPPATMSGSMMGS
610 620 630 640 650 660
670 680 690 700
pF1KB9 DMRTERFGQGGAGPVGGQGPRGMGPGTPAGYGRGREEYEGPNKKPRF
:::::::::::::::::::::::::::::::::::::::::::::::
NP_005 DMRTERFGQGGAGPVGGQGPRGMGPGTPAGYGRGREEYEGPNKKPRF
670 680 690 700
>>XP_005271170 (OMIM: 605199) PREDICTED: splicing factor (707 aa)
initn: 5111 init1: 5111 opt: 5111 Z-score: 1538.4 bits: 295.2 E(85289): 6e-79
Smith-Waterman score: 5111; 100.0% identity (100.0% similar) in 707 aa overlap (1-707:1-707)
10 20 30 40 50 60
pF1KB9 MSRDRFRSRGGGGGGFHRRGGGGGRGGLHDFRSPPPGMGLNQNRGPMGPGPGQSGPKPPI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MSRDRFRSRGGGGGGFHRRGGGGGRGGLHDFRSPPPGMGLNQNRGPMGPGPGQSGPKPPI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 PPPPPHQQQQQPPPQQPPPQQPPPHQPPPHPQPHQQQQPPPPPQDSSKPVVAQGPGPAPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PPPPPHQQQQQPPPQQPPPQQPPPHQPPPHPQPHQQQQPPPPPQDSSKPVVAQGPGPAPG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 VGSAPPASSSAPPATPPTSGAPPGSGPGPTPTPPPAVTSAPPGAPPPTPPSSGVPTTPPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VGSAPPASSSAPPATPPTSGAPPGSGPGPTPTPPPAVTSAPPGAPPPTPPSSGVPTTPPQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 AGGPPPPPAAVPGPGPGPKQGPGPGGPKGGKMPGGPKPGGGPGLSTPGGHPKPPHRGGGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AGGPPPPPAAVPGPGPGPKQGPGPGGPKGGKMPGGPKPGGGPGLSTPGGHPKPPHRGGGE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 PRGGRQHHPPYHQQHHQGPPPGGPGGRSEEKISDSEGFKANLSLLRRPGEKTYTQRCRLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PRGGRQHHPPYHQQHHQGPPPGGPGGRSEEKISDSEGFKANLSLLRRPGEKTYTQRCRLF
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 VGNLPADITEDEFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIAKAELDDTPMRGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VGNLPADITEDEFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIAKAELDDTPMRGR
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 QLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTGKGIVEFAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTGKGIVEFAS
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB9 KPAARKAFERCSEGVFLLTTTPRPVIVEPLEQLDDEDGLPEKLAQKNPMYQKERETPPRF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KPAARKAFERCSEGVFLLTTTPRPVIVEPLEQLDDEDGLPEKLAQKNPMYQKERETPPRF
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB9 AQHGTFEYEYSQRWKSLDEMEKQQREQVEKNMKDAKDKLESEMEDAYHEHQANLLRQDLM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AQHGTFEYEYSQRWKSLDEMEKQQREQVEKNMKDAKDKLESEMEDAYHEHQANLLRQDLM
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB9 RRQEELRRMEELHNQEMQKRKEMQLRQEEERRRREEEMMIRQREMEEQMRRQREESYSRM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RRQEELRRMEELHNQEMQKRKEMQLRQEEERRRREEEMMIRQREMEEQMRRQREESYSRM
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB9 GYMDPRERDMRMGGGGAMNMGDPYGSGGQKFPPLGGGGGIGYEANPGVPPATMSGSMMGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GYMDPRERDMRMGGGGAMNMGDPYGSGGQKFPPLGGGGGIGYEANPGVPPATMSGSMMGS
610 620 630 640 650 660
670 680 690 700
pF1KB9 DMRTERFGQGGAGPVGGQGPRGMGPGTPAGYGRGREEYEGPNKKPRF
:::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DMRTERFGQGGAGPVGGQGPRGMGPGTPAGYGRGREEYEGPNKKPRF
670 680 690 700
>>XP_005271172 (OMIM: 605199) PREDICTED: splicing factor (669 aa)
initn: 4776 init1: 4776 opt: 4776 Z-score: 1439.7 bits: 276.8 E(85289): 1.9e-73
Smith-Waterman score: 4776; 100.0% identity (100.0% similar) in 662 aa overlap (1-662:1-662)
10 20 30 40 50 60
pF1KB9 MSRDRFRSRGGGGGGFHRRGGGGGRGGLHDFRSPPPGMGLNQNRGPMGPGPGQSGPKPPI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MSRDRFRSRGGGGGGFHRRGGGGGRGGLHDFRSPPPGMGLNQNRGPMGPGPGQSGPKPPI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 PPPPPHQQQQQPPPQQPPPQQPPPHQPPPHPQPHQQQQPPPPPQDSSKPVVAQGPGPAPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PPPPPHQQQQQPPPQQPPPQQPPPHQPPPHPQPHQQQQPPPPPQDSSKPVVAQGPGPAPG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 VGSAPPASSSAPPATPPTSGAPPGSGPGPTPTPPPAVTSAPPGAPPPTPPSSGVPTTPPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VGSAPPASSSAPPATPPTSGAPPGSGPGPTPTPPPAVTSAPPGAPPPTPPSSGVPTTPPQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 AGGPPPPPAAVPGPGPGPKQGPGPGGPKGGKMPGGPKPGGGPGLSTPGGHPKPPHRGGGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AGGPPPPPAAVPGPGPGPKQGPGPGGPKGGKMPGGPKPGGGPGLSTPGGHPKPPHRGGGE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 PRGGRQHHPPYHQQHHQGPPPGGPGGRSEEKISDSEGFKANLSLLRRPGEKTYTQRCRLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PRGGRQHHPPYHQQHHQGPPPGGPGGRSEEKISDSEGFKANLSLLRRPGEKTYTQRCRLF
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 VGNLPADITEDEFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIAKAELDDTPMRGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VGNLPADITEDEFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIAKAELDDTPMRGR
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 QLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTGKGIVEFAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTGKGIVEFAS
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB9 KPAARKAFERCSEGVFLLTTTPRPVIVEPLEQLDDEDGLPEKLAQKNPMYQKERETPPRF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KPAARKAFERCSEGVFLLTTTPRPVIVEPLEQLDDEDGLPEKLAQKNPMYQKERETPPRF
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB9 AQHGTFEYEYSQRWKSLDEMEKQQREQVEKNMKDAKDKLESEMEDAYHEHQANLLRQDLM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AQHGTFEYEYSQRWKSLDEMEKQQREQVEKNMKDAKDKLESEMEDAYHEHQANLLRQDLM
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB9 RRQEELRRMEELHNQEMQKRKEMQLRQEEERRRREEEMMIRQREMEEQMRRQREESYSRM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RRQEELRRMEELHNQEMQKRKEMQLRQEEERRRREEEMMIRQREMEEQMRRQREESYSRM
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB9 GYMDPRERDMRMGGGGAMNMGDPYGSGGQKFPPLGGGGGIGYEANPGVPPATMSGSMMGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GYMDPRERDMRMGGGGAMNMGDPYGSGGQKFPPLGGGGGIGYEANPGVPPATMSGSMMGS
610 620 630 640 650 660
670 680 690 700
pF1KB9 DMRTERFGQGGAGPVGGQGPRGMGPGTPAGYGRGREEYEGPNKKPRF
::
XP_005 DMVRMIDVG
>>XP_011540252 (OMIM: 605199) PREDICTED: splicing factor (679 aa)
initn: 4776 init1: 4776 opt: 4776 Z-score: 1439.6 bits: 276.8 E(85289): 1.9e-73
Smith-Waterman score: 4776; 100.0% identity (100.0% similar) in 662 aa overlap (1-662:1-662)
10 20 30 40 50 60
pF1KB9 MSRDRFRSRGGGGGGFHRRGGGGGRGGLHDFRSPPPGMGLNQNRGPMGPGPGQSGPKPPI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MSRDRFRSRGGGGGGFHRRGGGGGRGGLHDFRSPPPGMGLNQNRGPMGPGPGQSGPKPPI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 PPPPPHQQQQQPPPQQPPPQQPPPHQPPPHPQPHQQQQPPPPPQDSSKPVVAQGPGPAPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PPPPPHQQQQQPPPQQPPPQQPPPHQPPPHPQPHQQQQPPPPPQDSSKPVVAQGPGPAPG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 VGSAPPASSSAPPATPPTSGAPPGSGPGPTPTPPPAVTSAPPGAPPPTPPSSGVPTTPPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VGSAPPASSSAPPATPPTSGAPPGSGPGPTPTPPPAVTSAPPGAPPPTPPSSGVPTTPPQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 AGGPPPPPAAVPGPGPGPKQGPGPGGPKGGKMPGGPKPGGGPGLSTPGGHPKPPHRGGGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AGGPPPPPAAVPGPGPGPKQGPGPGGPKGGKMPGGPKPGGGPGLSTPGGHPKPPHRGGGE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 PRGGRQHHPPYHQQHHQGPPPGGPGGRSEEKISDSEGFKANLSLLRRPGEKTYTQRCRLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PRGGRQHHPPYHQQHHQGPPPGGPGGRSEEKISDSEGFKANLSLLRRPGEKTYTQRCRLF
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 VGNLPADITEDEFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIAKAELDDTPMRGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VGNLPADITEDEFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIAKAELDDTPMRGR
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 QLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTGKGIVEFAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTGKGIVEFAS
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB9 KPAARKAFERCSEGVFLLTTTPRPVIVEPLEQLDDEDGLPEKLAQKNPMYQKERETPPRF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KPAARKAFERCSEGVFLLTTTPRPVIVEPLEQLDDEDGLPEKLAQKNPMYQKERETPPRF
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB9 AQHGTFEYEYSQRWKSLDEMEKQQREQVEKNMKDAKDKLESEMEDAYHEHQANLLRQDLM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AQHGTFEYEYSQRWKSLDEMEKQQREQVEKNMKDAKDKLESEMEDAYHEHQANLLRQDLM
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB9 RRQEELRRMEELHNQEMQKRKEMQLRQEEERRRREEEMMIRQREMEEQMRRQREESYSRM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RRQEELRRMEELHNQEMQKRKEMQLRQEEERRRREEEMMIRQREMEEQMRRQREESYSRM
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB9 GYMDPRERDMRMGGGGAMNMGDPYGSGGQKFPPLGGGGGIGYEANPGVPPATMSGSMMGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GYMDPRERDMRMGGGGAMNMGDPYGSGGQKFPPLGGGGGIGYEANPGVPPATMSGSMMGS
610 620 630 640 650 660
670 680 690 700
pF1KB9 DMRTERFGQGGAGPVGGQGPRGMGPGTPAGYGRGREEYEGPNKKPRF
::
XP_011 DMVMYPVGRSTKEILIFTT
670
>>XP_006719907 (OMIM: 612408) PREDICTED: paraspeckle com (523 aa)
initn: 1710 init1: 1586 opt: 1783 Z-score: 556.6 bits: 113.1 E(85289): 2.9e-24
Smith-Waterman score: 1836; 60.5% identity (81.0% similar) in 484 aa overlap (259-707:45-523)
230 240 250 260 270 280
pF1KB9 GHPKPPHRGGGEPRGGRQHHPPYHQQHHQGPPPGGPGGRSEEKISDSEGFKANLSLLRRP
: : .:. :.. .. :: ... . .:
XP_006 NPARLRALESAVGESEPAAAAAMALALAGEPAPPAPAP-PEDHPDEEMGFTIDIKSFLKP
20 30 40 50 60 70
290 300 310 320 330 340
pF1KB9 GEKTYTQRCRLFVGNLPADITEDEFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIA
:::::::::::::::::.::::..::::: .::::.:::::. .:::::.::::.:::::
XP_006 GEKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIA
80 90 100 110 120 130
350 360 370 380 390 400
pF1KB9 KAELDDTPMRGRQLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRG
::::: : ...: ::.:::::.:::.:.:::: :::::::.:::::::.:.:::.:::::
XP_006 KAELDGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRG
140 150 160 170 180 190
410 420 430 440 450 460
pF1KB9 RSTGKGIVEFASKPAARKAFERCSEGVFLLTTTPRPVIVEPLEQLDDEDGLPEKLAQKNP
:.::::.::::.:: ::::.:::..:.::::::::::::::.::.:::::::::: ::.
XP_006 RATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPEKLMQKTQ
200 210 220 230 240 250
470 480 490 500 510 520
pF1KB9 MYQKERETPPRFAQHGTFEYEYSQRWKSLDEMEKQQREQVEKNMKDAKDKLESEMEDAYH
.:.:::: :::::: ::::.::..:::.::::::::::::..:...::.:::.::: : :
XP_006 QYHKEREQPPRFAQPGTFEFEYASRWKALDEMEKQQREQVDRNIREAKEKLEAEMEAARH
260 270 280 290 300 310
530 540 550 560 570 580
pF1KB9 EHQANLLRQDLMRRQEELRRMEELHNQEMQKRKEMQLRQEEERRRREEEMMIRQREMEEQ
::: :.:::::::::::::.:::.:::.::::..:::.:::.::::::: ::.::.::
XP_006 EHQLMLMRQDLMRRQEELRRLEELRNQELQKRKQIQLRHEEEHRRREEEM-IRHREQEE-
320 330 340 350 360 370
590 600 610 620 630 640
pF1KB9 MRRQREESYSRMGYMDPRERDMRMGG-G--GAMNMGD---PYGSGGQKFPPLGGGGGIGY
.::: .:.. . .::. ::..:::: : ::.:::: : .:.: ::. : . .
XP_006 LRRQ-QEGF-KPNYMENREQEMRMGDMGPRGAINMGDAFSPAPAGNQGPPPMMGMNMNNR
380 390 400 410 420
650 660 670
pF1KB9 EANPGVP--PATMSG----SMMGSDM-------RTERFGQGG----AGPVGG-------Q
. :: : :. : . ::. : ...:: :: ..:.:. :
XP_006 ATIPGPPMGPGPAMGPEGAANMGTPMMPDNGAVHNDRFPQGPPSQMGSPMGSRTGSETPQ
430 440 450 460 470 480
680 690 700
pF1KB9 GP-RGMGP--GTPAGYGRGRE--EYEGPNKKPRF
.: :.:: : :.:.::: . ..:::::. :.
XP_006 APMSGVGPVSGGPGGFGRGSQGGNFEGPNKRRRY
490 500 510 520
>>NP_001035879 (OMIM: 612408) paraspeckle component 1 [H (523 aa)
initn: 1710 init1: 1586 opt: 1783 Z-score: 556.6 bits: 113.1 E(85289): 2.9e-24
Smith-Waterman score: 1836; 60.5% identity (81.0% similar) in 484 aa overlap (259-707:45-523)
230 240 250 260 270 280
pF1KB9 GHPKPPHRGGGEPRGGRQHHPPYHQQHHQGPPPGGPGGRSEEKISDSEGFKANLSLLRRP
: : .:. :.. .. :: ... . .:
NP_001 NPARLRALESAVGESEPAAAAAMALALAGEPAPPAPAP-PEDHPDEEMGFTIDIKSFLKP
20 30 40 50 60 70
290 300 310 320 330 340
pF1KB9 GEKTYTQRCRLFVGNLPADITEDEFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIA
:::::::::::::::::.::::..::::: .::::.:::::. .:::::.::::.:::::
NP_001 GEKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIA
80 90 100 110 120 130
350 360 370 380 390 400
pF1KB9 KAELDDTPMRGRQLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRG
::::: : ...: ::.:::::.:::.:.:::: :::::::.:::::::.:.:::.:::::
NP_001 KAELDGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRG
140 150 160 170 180 190
410 420 430 440 450 460
pF1KB9 RSTGKGIVEFASKPAARKAFERCSEGVFLLTTTPRPVIVEPLEQLDDEDGLPEKLAQKNP
:.::::.::::.:: ::::.:::..:.::::::::::::::.::.:::::::::: ::.
NP_001 RATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPEKLMQKTQ
200 210 220 230 240 250
470 480 490 500 510 520
pF1KB9 MYQKERETPPRFAQHGTFEYEYSQRWKSLDEMEKQQREQVEKNMKDAKDKLESEMEDAYH
.:.:::: :::::: ::::.::..:::.::::::::::::..:...::.:::.::: : :
NP_001 QYHKEREQPPRFAQPGTFEFEYASRWKALDEMEKQQREQVDRNIREAKEKLEAEMEAARH
260 270 280 290 300 310
530 540 550 560 570 580
pF1KB9 EHQANLLRQDLMRRQEELRRMEELHNQEMQKRKEMQLRQEEERRRREEEMMIRQREMEEQ
::: :.:::::::::::::.:::.:::.::::..:::.:::.::::::: ::.::.::
NP_001 EHQLMLMRQDLMRRQEELRRLEELRNQELQKRKQIQLRHEEEHRRREEEM-IRHREQEE-
320 330 340 350 360 370
590 600 610 620 630 640
pF1KB9 MRRQREESYSRMGYMDPRERDMRMGG-G--GAMNMGD---PYGSGGQKFPPLGGGGGIGY
.::: .:.. . .::. ::..:::: : ::.:::: : .:.: ::. : . .
NP_001 LRRQ-QEGF-KPNYMENREQEMRMGDMGPRGAINMGDAFSPAPAGNQGPPPMMGMNMNNR
380 390 400 410 420
650 660 670
pF1KB9 EANPGVP--PATMSG----SMMGSDM-------RTERFGQGG----AGPVGG-------Q
. :: : :. : . ::. : ...:: :: ..:.:. :
NP_001 ATIPGPPMGPGPAMGPEGAANMGTPMMPDNGAVHNDRFPQGPPSQMGSPMGSRTGSETPQ
430 440 450 460 470 480
680 690 700
pF1KB9 GP-RGMGP--GTPAGYGRGRE--EYEGPNKKPRF
.: :.:: : :.:.::: . ..:::::. :.
NP_001 APMSGVGPVSGGPGGFGRGSQGGNFEGPNKRRRY
490 500 510 520
>>XP_011533439 (OMIM: 612408) PREDICTED: paraspeckle com (469 aa)
initn: 1773 init1: 1586 opt: 1758 Z-score: 549.7 bits: 111.6 E(85289): 7e-24
Smith-Waterman score: 1758; 64.2% identity (84.8% similar) in 422 aa overlap (259-672:45-461)
230 240 250 260 270 280
pF1KB9 GHPKPPHRGGGEPRGGRQHHPPYHQQHHQGPPPGGPGGRSEEKISDSEGFKANLSLLRRP
: : .:. :.. .. :: ... . .:
XP_011 NPARLRALESAVGESEPAAAAAMALALAGEPAPPAPAP-PEDHPDEEMGFTIDIKSFLKP
20 30 40 50 60 70
290 300 310 320 330 340
pF1KB9 GEKTYTQRCRLFVGNLPADITEDEFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIA
:::::::::::::::::.::::..::::: .::::.:::::. .:::::.::::.:::::
XP_011 GEKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIA
80 90 100 110 120 130
350 360 370 380 390 400
pF1KB9 KAELDDTPMRGRQLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRG
::::: : ...: ::.:::::.:::.:.:::: :::::::.:::::::.:.:::.:::::
XP_011 KAELDGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRG
140 150 160 170 180 190
410 420 430 440 450 460
pF1KB9 RSTGKGIVEFASKPAARKAFERCSEGVFLLTTTPRPVIVEPLEQLDDEDGLPEKLAQKNP
:.::::.::::.:: ::::.:::..:.::::::::::::::.::.:::::::::: ::.
XP_011 RATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPEKLMQKTQ
200 210 220 230 240 250
470 480 490 500 510 520
pF1KB9 MYQKERETPPRFAQHGTFEYEYSQRWKSLDEMEKQQREQVEKNMKDAKDKLESEMEDAYH
.:.:::: :::::: ::::.::..:::.::::::::::::..:...::.:::.::: : :
XP_011 QYHKEREQPPRFAQPGTFEFEYASRWKALDEMEKQQREQVDRNIREAKEKLEAEMEAARH
260 270 280 290 300 310
530 540 550 560 570 580
pF1KB9 EHQANLLRQDLMRRQEELRRMEELHNQEMQKRKEMQLRQEEERRRREEEMMIRQREMEEQ
::: :.:::::::::::::.:::.:::.::::..:::.:::.::::::: ::.::.::
XP_011 EHQLMLMRQDLMRRQEELRRLEELRNQELQKRKQIQLRHEEEHRRREEEM-IRHREQEE-
320 330 340 350 360 370
590 600 610 620 630 640
pF1KB9 MRRQREESYSRMGYMDPRERDMRMGG-G--GAMNMGD---PYGSGGQKFPPLGGGGGIGY
.::: .:.. . .::. ::..:::: : ::.:::: : .:.: ::. : . .
XP_011 LRRQ-QEGF-KPNYMENREQEMRMGDMGPRGAINMGDAFSPAPAGNQGPPPMMGMNMNNR
380 390 400 410 420
650 660 670 680 690 700
pF1KB9 EANPGVP--PATMSGSMMGSDMRTERFGQGGAGPVGGQGPRGMGPGTPAGYGRGREEYEG
. :: : :. : ...: : . ..::
XP_011 ATIPGPPMGPGPAMGPEGAANMGTPMMPDNGAVGDKRKCG
430 440 450 460
pF1KB9 PNKKPRF
707 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 14:38:07 2016 done: Mon Nov 7 14:38:09 2016
Total Scan time: 16.170 Total Display time: 0.190
Function used was FASTA [36.3.4 Apr, 2011]