Result of FASTA (ccds) for
pFN21AB9944
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9944, 652 aa
1>>>pF1KB9944 652 - 652 aa - 652 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.7293+/-0.000892; mu= 11.4874+/- 0.054
mean_var=220.7332+/-46.279, 0's: 0 Z-trim(114.4): 43 B-trim: 0 in 0/51
Lambda= 0.086326
statistics sampled from 14892 (14928) to 14892 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.778), E-opt: 0.2 (0.459), width: 16
Scan time: 4.370
The best scores are: opt bits E(32554)
CCDS53848.1 CHFR gene_id:55743|Hs108|chr12 ( 652) 4557 580.5 2.4e-165
CCDS53849.1 CHFR gene_id:55743|Hs108|chr12 ( 664) 3658 468.6 1.2e-131
CCDS53847.1 CHFR gene_id:55743|Hs108|chr12 ( 572) 3246 417.2 3.2e-116
CCDS31937.1 CHFR gene_id:55743|Hs108|chr12 ( 623) 3246 417.2 3.3e-116
>>CCDS53848.1 CHFR gene_id:55743|Hs108|chr12 (652 aa)
initn: 4557 init1: 4557 opt: 4557 Z-score: 3081.9 bits: 580.5 E(32554): 2.4e-165
Smith-Waterman score: 4557; 99.8% identity (100.0% similar) in 652 aa overlap (1-652:1-652)
10 20 30 40 50 60
pF1KB9 MERPEEGKQSPPPQPWGRLLRLGAEEGEPHVLLRKREWTIGRRRGCDLSFPSNKLVSGDH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MERPEEGKQSPPPQPWGRLLRLGAEEGEPHVLLRKREWTIGRRRGCDLSFPSNKLVSGDH
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 CRIVVDEKSGQVTLEDTSTSGTVINKLKVVKKQTCPLQTGDVIYLVYRKNEPEHNVAYLY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 CRIVVDEKSGQVTLEDTSTSGTVINKLKVVKKQTCPLQTGDVIYLVYRKNEPEHNVAYLY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 ESLSEKQGMTQESFDTSGAGAGRGADPRVPPSSPATQVCFEEPQPSTSTSDLFPTASASS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 ESLSEKQGMTQESFDTSGAGAGRGADPRVPPSSPATQVCFEEPQPSTSTSDLFPTASASS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 TEPSPAGRERSSSCGSGGGGISPKGSGPSVASDEVSSFASALPDRKTASFSSLEPQDQED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 TEPSPAGRERSSSCGSGGGGISPKGSGPSVASDEVSSFASALPDRKTASFSSLEPQDQED
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 LEPVKKKMRGDGDLDLNGQLLVAQPRRNAQTVHEDVRAAAGKPDKMEETLTCIICQDLLH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 LEPVKKKMRGDGDLDLNGQLLVAQPRRNAQTVHEDVRAAAGKPDKMEETLTCIICQDLLH
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 DCVSLQPCMHTFCAACYSGWMERSSLCPTCRCPVERICKNHILNNLVEAYLIQHPDKSRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 DCVSLQPCMHTFCAACYSGWMERSSLCPTCRCPVERICKNHILNNLVEAYLIQHPDKSRS
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 EEDVQSMDARNKITQDMLQPKVRRSFSDEEGSSEDLLELSDVDSESSDISQPYVVCRQCP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 EEDVQSMDARNKITQDMLQPKVRRSFSDEEGSSEDLLELSDVDSESSDISQPYVVCRQCP
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB9 EYRRQAAQPPHCPAPEGEPGAPQALGDAPSTSVSLTTAVQDYVCPLQGSHALCTCCFQPM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 EYRRQAAQPPHCPAPEGEPGAPQALGDAPSTSVSLTTAVQDYVCPLQGSHALCTCCFQPM
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB9 PDRRVEREQDPRVAPQQCAVCLQPFCHLYWGCTRTGCYGCLAPFCELNLGDKCLDGVLNN
::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 PDRRAEREQDPRVAPQQCAVCLQPFCHLYWGCTRTGCYGCLAPFCELNLGDKCLDGVLNN
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB9 NSYESDILKNYLATRGLTWKNMLTESLVALQRGVFLLSDYRVTGDTVLCYCCGLRSFREL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 NSYESDILKNYLATRGLTWKNMLTESLVALQRGVFLLSDYRVTGDTVLCYCCGLRSFREL
550 560 570 580 590 600
610 620 630 640 650
pF1KB9 TYQYRQNIPASELPVAVTSRPDCYWGRNCRTQVKAHHAMKFNHICEQTRFKN
::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 TYQYRQNIPASELPVAVTSRPDCYWGRNCRTQVKAHHAMKFNHICEQTRFKN
610 620 630 640 650
>>CCDS53849.1 CHFR gene_id:55743|Hs108|chr12 (664 aa)
initn: 3647 init1: 3647 opt: 3658 Z-score: 2476.7 bits: 468.6 E(32554): 1.2e-131
Smith-Waterman score: 4523; 98.0% identity (98.2% similar) in 664 aa overlap (1-652:1-664)
10 20 30 40 50 60
pF1KB9 MERPEEGKQSPPPQPWGRLLRLGAEEGEPHVLLRKREWTIGRRRGCDLSFPSNKLVSGDH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MERPEEGKQSPPPQPWGRLLRLGAEEGEPHVLLRKREWTIGRRRGCDLSFPSNKLVSGDH
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 CRIVVDEKSGQVTLEDTSTSGTVINKLKVVKKQTCPLQTGDVIYLVYRKNEPEHNVAYLY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 CRIVVDEKSGQVTLEDTSTSGTVINKLKVVKKQTCPLQTGDVIYLVYRKNEPEHNVAYLY
70 80 90 100 110 120
130 140 150 160
pF1KB9 ESLSEKQGMTQESF------------DTSGAGAGRGADPRVPPSSPATQVCFEEPQPSTS
:::::::::::::: ::::::::::::::::::::::::::::::::::
CCDS53 ESLSEKQGMTQESFEANKENVFHGTKDTSGAGAGRGADPRVPPSSPATQVCFEEPQPSTS
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB9 TSDLFPTASASSTEPSPAGRERSSSCGSGGGGISPKGSGPSVASDEVSSFASALPDRKTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 TSDLFPTASASSTEPSPAGRERSSSCGSGGGGISPKGSGPSVASDEVSSFASALPDRKTA
190 200 210 220 230 240
230 240 250 260 270 280
pF1KB9 SFSSLEPQDQEDLEPVKKKMRGDGDLDLNGQLLVAQPRRNAQTVHEDVRAAAGKPDKMEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 SFSSLEPQDQEDLEPVKKKMRGDGDLDLNGQLLVAQPRRNAQTVHEDVRAAAGKPDKMEE
250 260 270 280 290 300
290 300 310 320 330 340
pF1KB9 TLTCIICQDLLHDCVSLQPCMHTFCAACYSGWMERSSLCPTCRCPVERICKNHILNNLVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 TLTCIICQDLLHDCVSLQPCMHTFCAACYSGWMERSSLCPTCRCPVERICKNHILNNLVE
310 320 330 340 350 360
350 360 370 380 390 400
pF1KB9 AYLIQHPDKSRSEEDVQSMDARNKITQDMLQPKVRRSFSDEEGSSEDLLELSDVDSESSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 AYLIQHPDKSRSEEDVQSMDARNKITQDMLQPKVRRSFSDEEGSSEDLLELSDVDSESSD
370 380 390 400 410 420
410 420 430 440 450 460
pF1KB9 ISQPYVVCRQCPEYRRQAAQPPHCPAPEGEPGAPQALGDAPSTSVSLTTAVQDYVCPLQG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 ISQPYVVCRQCPEYRRQAAQPPHCPAPEGEPGAPQALGDAPSTSVSLTTAVQDYVCPLQG
430 440 450 460 470 480
470 480 490 500 510 520
pF1KB9 SHALCTCCFQPMPDRRVEREQDPRVAPQQCAVCLQPFCHLYWGCTRTGCYGCLAPFCELN
::::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::
CCDS53 SHALCTCCFQPMPDRRAEREQDPRVAPQQCAVCLQPFCHLYWGCTRTGCYGCLAPFCELN
490 500 510 520 530 540
530 540 550 560 570 580
pF1KB9 LGDKCLDGVLNNNSYESDILKNYLATRGLTWKNMLTESLVALQRGVFLLSDYRVTGDTVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 LGDKCLDGVLNNNSYESDILKNYLATRGLTWKNMLTESLVALQRGVFLLSDYRVTGDTVL
550 560 570 580 590 600
590 600 610 620 630 640
pF1KB9 CYCCGLRSFRELTYQYRQNIPASELPVAVTSRPDCYWGRNCRTQVKAHHAMKFNHICEQT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 CYCCGLRSFRELTYQYRQNIPASELPVAVTSRPDCYWGRNCRTQVKAHHAMKFNHICEQT
610 620 630 640 650 660
650
pF1KB9 RFKN
::::
CCDS53 RFKN
>>CCDS53847.1 CHFR gene_id:55743|Hs108|chr12 (572 aa)
initn: 4004 init1: 3232 opt: 3246 Z-score: 2200.1 bits: 417.2 E(32554): 3.2e-116
Smith-Waterman score: 3847; 87.4% identity (87.6% similar) in 652 aa overlap (1-652:1-572)
10 20 30 40 50 60
pF1KB9 MERPEEGKQSPPPQPWGRLLRLGAEEGEPHVLLRKREWTIGRRRGCDLSFPSNKLVSGDH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MERPEEGKQSPPPQPWGRLLRLGAEEGEPHVLLRKREWTIGRRRGCDLSFPSNKLVSGDH
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 CRIVVDEKSGQVTLEDTSTSGTVINKLKVVKKQTCPLQTGDVIYLVYRKNEPEHNVAYLY
::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 CRIVVDEKSGQVTLEDTSTSGTVINKLKVVKKQTCPLQTGDVIYLVYRKNEPEHR-----
70 80 90 100 110
130 140 150 160 170 180
pF1KB9 ESLSEKQGMTQESFDTSGAGAGRGADPRVPPSSPATQVCFEEPQPSTSTSDLFPTASASS
CCDS53 ------------------------------------------------------------
190 200 210 220 230 240
pF1KB9 TEPSPAGRERSSSCGSGGGGISPKGSGPSVASDEVSSFASALPDRKTASFSSLEPQDQED
:::::::::::::::::::::::::::::::::::::::::::::
CCDS53 ---------------SGGGGISPKGSGPSVASDEVSSFASALPDRKTASFSSLEPQDQED
120 130 140 150 160
250 260 270 280 290 300
pF1KB9 LEPVKKKMRGDGDLDLNGQLLVAQPRRNAQTVHEDVRAAAGKPDKMEETLTCIICQDLLH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 LEPVKKKMRGDGDLDLNGQLLVAQPRRNAQTVHEDVRAAAGKPDKMEETLTCIICQDLLH
170 180 190 200 210 220
310 320 330 340 350 360
pF1KB9 DCVSLQPCMHTFCAACYSGWMERSSLCPTCRCPVERICKNHILNNLVEAYLIQHPDKSRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 DCVSLQPCMHTFCAACYSGWMERSSLCPTCRCPVERICKNHILNNLVEAYLIQHPDKSRS
230 240 250 260 270 280
370 380 390 400 410 420
pF1KB9 EEDVQSMDARNKITQDMLQPKVRRSFSDEEGSSEDLLELSDVDSESSDISQPYVVCRQCP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 EEDVQSMDARNKITQDMLQPKVRRSFSDEEGSSEDLLELSDVDSESSDISQPYVVCRQCP
290 300 310 320 330 340
430 440 450 460 470 480
pF1KB9 EYRRQAAQPPHCPAPEGEPGAPQALGDAPSTSVSLTTAVQDYVCPLQGSHALCTCCFQPM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 EYRRQAAQPPHCPAPEGEPGAPQALGDAPSTSVSLTTAVQDYVCPLQGSHALCTCCFQPM
350 360 370 380 390 400
490 500 510 520 530 540
pF1KB9 PDRRVEREQDPRVAPQQCAVCLQPFCHLYWGCTRTGCYGCLAPFCELNLGDKCLDGVLNN
::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 PDRRAEREQDPRVAPQQCAVCLQPFCHLYWGCTRTGCYGCLAPFCELNLGDKCLDGVLNN
410 420 430 440 450 460
550 560 570 580 590 600
pF1KB9 NSYESDILKNYLATRGLTWKNMLTESLVALQRGVFLLSDYRVTGDTVLCYCCGLRSFREL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 NSYESDILKNYLATRGLTWKNMLTESLVALQRGVFLLSDYRVTGDTVLCYCCGLRSFREL
470 480 490 500 510 520
610 620 630 640 650
pF1KB9 TYQYRQNIPASELPVAVTSRPDCYWGRNCRTQVKAHHAMKFNHICEQTRFKN
::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 TYQYRQNIPASELPVAVTSRPDCYWGRNCRTQVKAHHAMKFNHICEQTRFKN
530 540 550 560 570
>>CCDS31937.1 CHFR gene_id:55743|Hs108|chr12 (623 aa)
initn: 4139 init1: 3240 opt: 3246 Z-score: 2199.7 bits: 417.2 E(32554): 3.3e-116
Smith-Waterman score: 4089; 91.7% identity (93.1% similar) in 652 aa overlap (1-652:1-623)
10 20 30 40 50 60
pF1KB9 MERPEEGKQSPPPQPWGRLLRLGAEEGEPHVLLRKREWTIGRRRGCDLSFPSNKLVSGDH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MERPEEGKQSPPPQPWGRLLRLGAEEGEPHVLLRKREWTIGRRRGCDLSFPSNKLVSGDH
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 CRIVVDEKSGQVTLEDTSTSGTVINKLKVVKKQTCPLQTGDVIYLVYRKNEPEHNVAYLY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 CRIVVDEKSGQVTLEDTSTSGTVINKLKVVKKQTCPLQTGDVIYLVYRKNEPEHNVAYLY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 ESLSEKQGMTQESFDTSGAGAGRGADPRVPPSSPATQVCFEEPQPSTSTSDLFPTASASS
::::::::::::::. :: : . . :. :: ...:
CCDS31 ESLSEKQGMTQESFEM------------VP-------CCVAQAGLKLLGSSDPPTLASQS
130 140 150 160
190 200 210 220 230 240
pF1KB9 TEPSPAGRERSSSCGSGGGGISPKGSGPSVASDEVSSFASALPDRKTASFSSLEPQDQED
. ::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 IVIT----------GSGGGGISPKGSGPSVASDEVSSFASALPDRKTASFSSLEPQDQED
170 180 190 200 210
250 260 270 280 290 300
pF1KB9 LEPVKKKMRGDGDLDLNGQLLVAQPRRNAQTVHEDVRAAAGKPDKMEETLTCIICQDLLH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LEPVKKKMRGDGDLDLNGQLLVAQPRRNAQTVHEDVRAAAGKPDKMEETLTCIICQDLLH
220 230 240 250 260 270
310 320 330 340 350 360
pF1KB9 DCVSLQPCMHTFCAACYSGWMERSSLCPTCRCPVERICKNHILNNLVEAYLIQHPDKSRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 DCVSLQPCMHTFCAACYSGWMERSSLCPTCRCPVERICKNHILNNLVEAYLIQHPDKSRS
280 290 300 310 320 330
370 380 390 400 410 420
pF1KB9 EEDVQSMDARNKITQDMLQPKVRRSFSDEEGSSEDLLELSDVDSESSDISQPYVVCRQCP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 EEDVQSMDARNKITQDMLQPKVRRSFSDEEGSSEDLLELSDVDSESSDISQPYVVCRQCP
340 350 360 370 380 390
430 440 450 460 470 480
pF1KB9 EYRRQAAQPPHCPAPEGEPGAPQALGDAPSTSVSLTTAVQDYVCPLQGSHALCTCCFQPM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 EYRRQAAQPPHCPAPEGEPGAPQALGDAPSTSVSLTTAVQDYVCPLQGSHALCTCCFQPM
400 410 420 430 440 450
490 500 510 520 530 540
pF1KB9 PDRRVEREQDPRVAPQQCAVCLQPFCHLYWGCTRTGCYGCLAPFCELNLGDKCLDGVLNN
::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 PDRRAEREQDPRVAPQQCAVCLQPFCHLYWGCTRTGCYGCLAPFCELNLGDKCLDGVLNN
460 470 480 490 500 510
550 560 570 580 590 600
pF1KB9 NSYESDILKNYLATRGLTWKNMLTESLVALQRGVFLLSDYRVTGDTVLCYCCGLRSFREL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 NSYESDILKNYLATRGLTWKNMLTESLVALQRGVFLLSDYRVTGDTVLCYCCGLRSFREL
520 530 540 550 560 570
610 620 630 640 650
pF1KB9 TYQYRQNIPASELPVAVTSRPDCYWGRNCRTQVKAHHAMKFNHICEQTRFKN
::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 TYQYRQNIPASELPVAVTSRPDCYWGRNCRTQVKAHHAMKFNHICEQTRFKN
580 590 600 610 620
652 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 06:15:06 2016 done: Sun Nov 6 06:15:07 2016
Total Scan time: 4.370 Total Display time: 0.050
Function used was FASTA [36.3.4 Apr, 2011]