Result of FASTA (ccds) for
pFN21AB9939
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9939, 527 aa
1>>>pF1KB9939 527 - 527 aa - 527 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.4621+/-0.000849; mu= 17.7144+/- 0.051
mean_var=70.8429+/-14.410, 0's: 0 Z-trim(107.0): 12 B-trim: 6 in 1/50
Lambda= 0.152379
statistics sampled from 9278 (9285) to 9278 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.665), E-opt: 0.2 (0.285), width: 16
Scan time: 2.920
The best scores are: opt bits E(32554)
CCDS32073.1 POLE2 gene_id:5427|Hs108|chr14 ( 527) 3542 788.0 0
CCDS55915.1 POLE2 gene_id:5427|Hs108|chr14 ( 502) 3352 746.2 2e-215
CCDS55914.1 POLE2 gene_id:5427|Hs108|chr14 ( 501) 2873 640.9 1e-183
>>CCDS32073.1 POLE2 gene_id:5427|Hs108|chr14 (527 aa)
initn: 3542 init1: 3542 opt: 3542 Z-score: 4206.3 bits: 788.0 E(32554): 0
Smith-Waterman score: 3542; 100.0% identity (100.0% similar) in 527 aa overlap (1-527:1-527)
10 20 30 40 50 60
pF1KB9 MAPERLRSRALSAFKLRGLLLRGEAIKYLTEALQSISELELEDKLEKIINAVEKQPLSSN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MAPERLRSRALSAFKLRGLLLRGEAIKYLTEALQSISELELEDKLEKIINAVEKQPLSSN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 MIERSVVEAAVQECSQSVDETIEHVFNIIGAFDIPRFVYNSERKKFLPLLMTNHPAPNLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MIERSVVEAAVQECSQSVDETIEHVFNIIGAFDIPRFVYNSERKKFLPLLMTNHPAPNLF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 GTPRDKAEMFRERYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGSTTKIGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 GTPRDKAEMFRERYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGSTTKIGD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 AIVLGMITQLKEGKFFLEDPTGTVQLDLSKAQFHSGLYTEACFVLAEGWFEDQVFHVNAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 AIVLGMITQLKEGKFFLEDPTGTVQLDLSKAQFHSGLYTEACFVLAEGWFEDQVFHVNAF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 GFPPTEPSSTTRAYYGNINFFGGPSNTSVKTSAKLKQLEEENKDAMFVFLSDVWLDQVEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 GFPPTEPSSTTRAYYGNINFFGGPSNTSVKTSAKLKQLEEENKDAMFVFLSDVWLDQVEV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 LEKLRIMFAGYSPAPPTCFILCGNFSSAPYGKNQVQALKDSLKTLADIICEYPDIHQSSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 LEKLRIMFAGYSPAPPTCFILCGNFSSAPYGKNQVQALKDSLKTLADIICEYPDIHQSSR
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 FVFVPGPEDPGFGSILPRPPLAESITNEFRQRVPFSVFTTNPCRIQYCTQEITVFREDLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 FVFVPGPEDPGFGSILPRPPLAESITNEFRQRVPFSVFTTNPCRIQYCTQEITVFREDLV
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB9 NKMCRNCVRFPSSNLAIPNHFVKTILSQGHLTPLPLYVCPVYWAYDYALRVYPVPDLLVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 NKMCRNCVRFPSSNLAIPNHFVKTILSQGHLTPLPLYVCPVYWAYDYALRVYPVPDLLVI
430 440 450 460 470 480
490 500 510 520
pF1KB9 ADKYDPFTTTNTECLCINPGSFPRSGFSFKVFYPSNKTVEDSKLQGF
:::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 ADKYDPFTTTNTECLCINPGSFPRSGFSFKVFYPSNKTVEDSKLQGF
490 500 510 520
>>CCDS55915.1 POLE2 gene_id:5427|Hs108|chr14 (502 aa)
initn: 3352 init1: 3352 opt: 3352 Z-score: 3980.9 bits: 746.2 E(32554): 2e-215
Smith-Waterman score: 3352; 100.0% identity (100.0% similar) in 499 aa overlap (1-499:1-499)
10 20 30 40 50 60
pF1KB9 MAPERLRSRALSAFKLRGLLLRGEAIKYLTEALQSISELELEDKLEKIINAVEKQPLSSN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MAPERLRSRALSAFKLRGLLLRGEAIKYLTEALQSISELELEDKLEKIINAVEKQPLSSN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 MIERSVVEAAVQECSQSVDETIEHVFNIIGAFDIPRFVYNSERKKFLPLLMTNHPAPNLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MIERSVVEAAVQECSQSVDETIEHVFNIIGAFDIPRFVYNSERKKFLPLLMTNHPAPNLF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 GTPRDKAEMFRERYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGSTTKIGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 GTPRDKAEMFRERYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGSTTKIGD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 AIVLGMITQLKEGKFFLEDPTGTVQLDLSKAQFHSGLYTEACFVLAEGWFEDQVFHVNAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 AIVLGMITQLKEGKFFLEDPTGTVQLDLSKAQFHSGLYTEACFVLAEGWFEDQVFHVNAF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 GFPPTEPSSTTRAYYGNINFFGGPSNTSVKTSAKLKQLEEENKDAMFVFLSDVWLDQVEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 GFPPTEPSSTTRAYYGNINFFGGPSNTSVKTSAKLKQLEEENKDAMFVFLSDVWLDQVEV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 LEKLRIMFAGYSPAPPTCFILCGNFSSAPYGKNQVQALKDSLKTLADIICEYPDIHQSSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 LEKLRIMFAGYSPAPPTCFILCGNFSSAPYGKNQVQALKDSLKTLADIICEYPDIHQSSR
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 FVFVPGPEDPGFGSILPRPPLAESITNEFRQRVPFSVFTTNPCRIQYCTQEITVFREDLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 FVFVPGPEDPGFGSILPRPPLAESITNEFRQRVPFSVFTTNPCRIQYCTQEITVFREDLV
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB9 NKMCRNCVRFPSSNLAIPNHFVKTILSQGHLTPLPLYVCPVYWAYDYALRVYPVPDLLVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 NKMCRNCVRFPSSNLAIPNHFVKTILSQGHLTPLPLYVCPVYWAYDYALRVYPVPDLLVI
430 440 450 460 470 480
490 500 510 520
pF1KB9 ADKYDPFTTTNTECLCINPGSFPRSGFSFKVFYPSNKTVEDSKLQGF
:::::::::::::::::::
CCDS55 ADKYDPFTTTNTECLCINPVRM
490 500
>>CCDS55914.1 POLE2 gene_id:5427|Hs108|chr14 (501 aa)
initn: 3350 init1: 2873 opt: 2873 Z-score: 3411.8 bits: 640.9 E(32554): 1e-183
Smith-Waterman score: 3302; 95.1% identity (95.1% similar) in 527 aa overlap (1-527:1-501)
10 20 30 40 50 60
pF1KB9 MAPERLRSRALSAFKLRGLLLRGEAIKYLTEALQSISELELEDKLEKIINAVEKQPLSSN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MAPERLRSRALSAFKLRGLLLRGEAIKYLTEALQSISELELEDKLEKIINAVEKQPLSSN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 MIERSVVEAAVQECSQSVDETIEHVFNIIGAFDIPRFVYNSERKKFLPLLMTNHPAPNLF
:::::::::::::::::::::: ::::::::::::
CCDS55 MIERSVVEAAVQECSQSVDETI--------------------------LLMTNHPAPNLF
70 80 90
130 140 150 160 170 180
pF1KB9 GTPRDKAEMFRERYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGSTTKIGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 GTPRDKAEMFRERYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGSTTKIGD
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB9 AIVLGMITQLKEGKFFLEDPTGTVQLDLSKAQFHSGLYTEACFVLAEGWFEDQVFHVNAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 AIVLGMITQLKEGKFFLEDPTGTVQLDLSKAQFHSGLYTEACFVLAEGWFEDQVFHVNAF
160 170 180 190 200 210
250 260 270 280 290 300
pF1KB9 GFPPTEPSSTTRAYYGNINFFGGPSNTSVKTSAKLKQLEEENKDAMFVFLSDVWLDQVEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 GFPPTEPSSTTRAYYGNINFFGGPSNTSVKTSAKLKQLEEENKDAMFVFLSDVWLDQVEV
220 230 240 250 260 270
310 320 330 340 350 360
pF1KB9 LEKLRIMFAGYSPAPPTCFILCGNFSSAPYGKNQVQALKDSLKTLADIICEYPDIHQSSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 LEKLRIMFAGYSPAPPTCFILCGNFSSAPYGKNQVQALKDSLKTLADIICEYPDIHQSSR
280 290 300 310 320 330
370 380 390 400 410 420
pF1KB9 FVFVPGPEDPGFGSILPRPPLAESITNEFRQRVPFSVFTTNPCRIQYCTQEITVFREDLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 FVFVPGPEDPGFGSILPRPPLAESITNEFRQRVPFSVFTTNPCRIQYCTQEITVFREDLV
340 350 360 370 380 390
430 440 450 460 470 480
pF1KB9 NKMCRNCVRFPSSNLAIPNHFVKTILSQGHLTPLPLYVCPVYWAYDYALRVYPVPDLLVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 NKMCRNCVRFPSSNLAIPNHFVKTILSQGHLTPLPLYVCPVYWAYDYALRVYPVPDLLVI
400 410 420 430 440 450
490 500 510 520
pF1KB9 ADKYDPFTTTNTECLCINPGSFPRSGFSFKVFYPSNKTVEDSKLQGF
:::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 ADKYDPFTTTNTECLCINPGSFPRSGFSFKVFYPSNKTVEDSKLQGF
460 470 480 490 500
527 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 12:23:31 2016 done: Sun Nov 6 12:23:31 2016
Total Scan time: 2.920 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]