FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9895, 237 aa
  1>>>pF1KB9895 237 - 237 aa - 237 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1825+/-0.00104; mu= 15.0504+/- 0.061
 mean_var=66.9616+/-14.109, 0's: 0 Z-trim(103.7): 24  B-trim: 50 in 1/48
 Lambda= 0.156733
 statistics sampled from 7509 (7521) to 7509 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.592), E-opt: 0.2 (0.231), width:  16
 Scan time:  2.180

The best scores are:                                      opt bits E(32554)
CCDS31797.1 TMBIM6 gene_id:7009|Hs108|chr12        ( 237) 1555 360.5 5.4e-100
CCDS44875.1 TMBIM6 gene_id:7009|Hs108|chr12        ( 295) 1555 360.6 6.5e-100


>>CCDS31797.1 TMBIM6 gene_id:7009|Hs108|chr12             (237 aa)
 initn: 1555 init1: 1555 opt: 1555  Z-score: 1908.7  bits: 360.5 E(32554): 5.4e-100
Smith-Waterman score: 1555; 100.0% identity (100.0% similar) in 237 aa overlap (1-237:1-237)

               10        20        30        40        50        60
pF1KB9 MNIFDRKINFDALLKFSHITPSTQQHLKKVYASFALCMFVAAAGAYVHMVTHFIQAGLLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MNIFDRKINFDALLKFSHITPSTQQHLKKVYASFALCMFVAAAGAYVHMVTHFIQAGLLS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 ALGSLILMIWLMATPHSHETEQKRLGLLAGFAFLTGVGLGPALEFCIAVNPSILPTAFMG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 ALGSLILMIWLMATPHSHETEQKRLGLLAGFAFLTGVGLGPALEFCIAVNPSILPTAFMG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 TAMIFTCFTLSALYARRRSYLFLGGILMSALSLLLLSSLGNVFFGSIWLFQANLYVGLVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 TAMIFTCFTLSALYARRRSYLFLGGILMSALSLLLLSSLGNVFFGSIWLFQANLYVGLVV
              130       140       150       160       170       180

              190       200       210       220       230       
pF1KB9 MCGFVLFDTQLIIEKAEHGDQDYIWHCIDLFLDFITVFRKLMMILAMNEKDKKKEKK
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MCGFVLFDTQLIIEKAEHGDQDYIWHCIDLFLDFITVFRKLMMILAMNEKDKKKEKK
              190       200       210       220       230       

>>CCDS44875.1 TMBIM6 gene_id:7009|Hs108|chr12             (295 aa)
 initn: 1555 init1: 1555 opt: 1555  Z-score: 1907.3  bits: 360.6 E(32554): 6.5e-100
Smith-Waterman score: 1555; 100.0% identity (100.0% similar) in 237 aa overlap (1-237:59-295)

                                             10        20        30
pF1KB9                               MNIFDRKINFDALLKFSHITPSTQQHLKKV
                                     ::::::::::::::::::::::::::::::
CCDS44 GCLPGPRGGPALFGLVTFGQSGDCCTDSGTMNIFDRKINFDALLKFSHITPSTQQHLKKV
       30        40        50        60        70        80        

               40        50        60        70        80        90
pF1KB9 YASFALCMFVAAAGAYVHMVTHFIQAGLLSALGSLILMIWLMATPHSHETEQKRLGLLAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 YASFALCMFVAAAGAYVHMVTHFIQAGLLSALGSLILMIWLMATPHSHETEQKRLGLLAG
       90       100       110       120       130       140        

              100       110       120       130       140       150
pF1KB9 FAFLTGVGLGPALEFCIAVNPSILPTAFMGTAMIFTCFTLSALYARRRSYLFLGGILMSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 FAFLTGVGLGPALEFCIAVNPSILPTAFMGTAMIFTCFTLSALYARRRSYLFLGGILMSA
      150       160       170       180       190       200        

              160       170       180       190       200       210
pF1KB9 LSLLLLSSLGNVFFGSIWLFQANLYVGLVVMCGFVLFDTQLIIEKAEHGDQDYIWHCIDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LSLLLLSSLGNVFFGSIWLFQANLYVGLVVMCGFVLFDTQLIIEKAEHGDQDYIWHCIDL
      210       220       230       240       250       260        

              220       230       
pF1KB9 FLDFITVFRKLMMILAMNEKDKKKEKK
       :::::::::::::::::::::::::::
CCDS44 FLDFITVFRKLMMILAMNEKDKKKEKK
      270       280       290     




237 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 12:30:29 2016 done: Sun Nov  6 12:30:29 2016
 Total Scan time:  2.180 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]