Result of FASTA (omim) for
pFN21AB9889
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9889, 1043 aa
1>>>pF1KB9889 1043 - 1043 aa - 1043 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.4358+/-0.000483; mu= 23.8504+/- 0.030
mean_var=130.7423+/-27.208, 0's: 0 Z-trim(112.9): 163 B-trim: 1067 in 1/52
Lambda= 0.112167
statistics sampled from 21844 (22053) to 21844 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.619), E-opt: 0.2 (0.259), width: 16
Scan time: 14.820
The best scores are: opt bits E(85289)
XP_005253098 (OMIM: 179615,233650,601457,603554,60 (1043) 7063 1155.8 0
XP_011518552 (OMIM: 179615,233650,601457,603554,60 (1043) 7063 1155.8 0
NP_000439 (OMIM: 179615,233650,601457,603554,60988 (1043) 7053 1154.2 0
XP_011524349 (OMIM: 610432,616260) PREDICTED: E3 u ( 191) 199 44.1 0.00089
XP_011524348 (OMIM: 610432,616260) PREDICTED: E3 u ( 196) 199 44.1 0.00091
NP_057355 (OMIM: 616319) E3 ubiquitin-protein liga ( 245) 200 44.4 0.00093
NP_001178253 (OMIM: 616319) E3 ubiquitin-protein l ( 245) 200 44.4 0.00093
XP_011524347 (OMIM: 610432,616260) PREDICTED: E3 u ( 227) 199 44.2 0.00099
NP_060301 (OMIM: 610432,616260) E3 ubiquitin-prote ( 232) 199 44.2 0.001
XP_016864265 (OMIM: 609732) PREDICTED: E3 ubiquiti ( 728) 205 45.8 0.001
XP_005265842 (OMIM: 609732) PREDICTED: E3 ubiquiti ( 728) 205 45.8 0.001
NP_001119800 (OMIM: 609732) E3 ubiquitin-protein l ( 728) 205 45.8 0.001
>>XP_005253098 (OMIM: 179615,233650,601457,603554,609889 (1043 aa)
initn: 7063 init1: 7063 opt: 7063 Z-score: 6183.7 bits: 1155.8 E(85289): 0
Smith-Waterman score: 7063; 100.0% identity (100.0% similar) in 1043 aa overlap (1-1043:1-1043)
10 20 30 40 50 60
pF1KB9 MAASFPPTLGLSSAPDEIQHPHIKFSEWKFKLFRVRSFEKTPEEAQKEKKDSFEGKPSLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MAASFPPTLGLSSAPDEIQHPHIKFSEWKFKLFRVRSFEKTPEEAQKEKKDSFEGKPSLE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 QSPAVLDKADGQKPVPTQPLLKAHPKFSKKFHDNEKARGKAIHQANLRHLCRICGNSFRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QSPAVLDKADGQKPVPTQPLLKAHPKFSKKFHDNEKARGKAIHQANLRHLCRICGNSFRA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 DEHNRRYPVHGPVDGKTLGLLRKKEKRATSWPDLIAKVFRIDVKADVDSIHPTEFCHNCW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DEHNRRYPVHGPVDGKTLGLLRKKEKRATSWPDLIAKVFRIDVKADVDSIHPTEFCHNCW
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 SIMHRKFSSAPCEVYFPRNVTMEWHPHTPSCDICNTARRGLKRKSLQPNLQLSKKLKTVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SIMHRKFSSAPCEVYFPRNVTMEWHPHTPSCDICNTARRGLKRKSLQPNLQLSKKLKTVL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 DQARQARQHKRRAQARISSKDVMKKIANCSKIHLSTKLLAVDFPEHFVKSISCQICEHIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DQARQARQHKRRAQARISSKDVMKKIANCSKIHLSTKLLAVDFPEHFVKSISCQICEHIL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 ADPVETNCKHVFCRVCILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLSVLNSLMVKCPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ADPVETNCKHVFCRVCILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLSVLNSLMVKCPA
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 KECNEEVSLEKYNHHISSHKESKEIFVHINKGGRPRQHLLSLTRRAQKHRLRELKLQVKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KECNEEVSLEKYNHHISSHKESKEIFVHINKGGRPRQHLLSLTRRAQKHRLRELKLQVKA
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB9 FADKEEGGDVKSVCMTLFLLALRARNEHRQADELEAIMQGKGSGLQPAVCLAIRVNTFLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 FADKEEGGDVKSVCMTLFLLALRARNEHRQADELEAIMQGKGSGLQPAVCLAIRVNTFLS
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB9 CSQYHKMYRTVKAITGRQIFQPLHALRNAEKVLLPGYHHFEWQPPLKNVSSSTDVGIIDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 CSQYHKMYRTVKAITGRQIFQPLHALRNAEKVLLPGYHHFEWQPPLKNVSSSTDVGIIDG
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB9 LSGLSSSVDDYPVDTIAKRFRYDSALVSALMDMEEDILEGMRSQDLDDYLNGPFTVVVKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LSGLSSSVDDYPVDTIAKRFRYDSALVSALMDMEEDILEGMRSQDLDDYLNGPFTVVVKE
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB9 SCDGMGDVSEKHGSGPVVPEKAVRFSFTIMKITIAHSSQNVKVFEEAKPNSELCCKPLCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SCDGMGDVSEKHGSGPVVPEKAVRFSFTIMKITIAHSSQNVKVFEEAKPNSELCCKPLCL
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB9 MLADESDHETLTAILSPLIAEREAMKSSELMLELGGILRTFKFIFRGTGYDEKLVREVEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MLADESDHETLTAILSPLIAEREAMKSSELMLELGGILRTFKFIFRGTGYDEKLVREVEG
670 680 690 700 710 720
730 740 750 760 770 780
pF1KB9 LEASGSVYICTLCDATRLEASQNLVFHSITRSHAENLERYEVWRSNPYHESVEELRDRVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LEASGSVYICTLCDATRLEASQNLVFHSITRSHAENLERYEVWRSNPYHESVEELRDRVK
730 740 750 760 770 780
790 800 810 820 830 840
pF1KB9 GVSAKPFIETVPSIDALHCDIGNAAEFYKIFQLEIGEVYKNPNASKEERKRWQATLDKHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GVSAKPFIETVPSIDALHCDIGNAAEFYKIFQLEIGEVYKNPNASKEERKRWQATLDKHL
790 800 810 820 830 840
850 860 870 880 890 900
pF1KB9 RKKMNLKPIMRMNGNFARKLMTKETVDAVCELIPSEERHEALRELMDLYLKMKPVWRSSC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RKKMNLKPIMRMNGNFARKLMTKETVDAVCELIPSEERHEALRELMDLYLKMKPVWRSSC
850 860 870 880 890 900
910 920 930 940 950 960
pF1KB9 PAKECPESLCQYSFNSQRFAELLSTKFKYRYEGKITNYFHKTLAHVPEIIERDGSIGAWA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PAKECPESLCQYSFNSQRFAELLSTKFKYRYEGKITNYFHKTLAHVPEIIERDGSIGAWA
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KB9 SEGNESGNKLFRRFRKMNARQSKCYEMEDVLKHHWLYTSKYLQKFMNAHNALKTSGFTMN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SEGNESGNKLFRRFRKMNARQSKCYEMEDVLKHHWLYTSKYLQKFMNAHNALKTSGFTMN
970 980 990 1000 1010 1020
1030 1040
pF1KB9 PQASLGDPLGIEDSLESQDSMEF
:::::::::::::::::::::::
XP_005 PQASLGDPLGIEDSLESQDSMEF
1030 1040
>>XP_011518552 (OMIM: 179615,233650,601457,603554,609889 (1043 aa)
initn: 7063 init1: 7063 opt: 7063 Z-score: 6183.7 bits: 1155.8 E(85289): 0
Smith-Waterman score: 7063; 100.0% identity (100.0% similar) in 1043 aa overlap (1-1043:1-1043)
10 20 30 40 50 60
pF1KB9 MAASFPPTLGLSSAPDEIQHPHIKFSEWKFKLFRVRSFEKTPEEAQKEKKDSFEGKPSLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAASFPPTLGLSSAPDEIQHPHIKFSEWKFKLFRVRSFEKTPEEAQKEKKDSFEGKPSLE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 QSPAVLDKADGQKPVPTQPLLKAHPKFSKKFHDNEKARGKAIHQANLRHLCRICGNSFRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QSPAVLDKADGQKPVPTQPLLKAHPKFSKKFHDNEKARGKAIHQANLRHLCRICGNSFRA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 DEHNRRYPVHGPVDGKTLGLLRKKEKRATSWPDLIAKVFRIDVKADVDSIHPTEFCHNCW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DEHNRRYPVHGPVDGKTLGLLRKKEKRATSWPDLIAKVFRIDVKADVDSIHPTEFCHNCW
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 SIMHRKFSSAPCEVYFPRNVTMEWHPHTPSCDICNTARRGLKRKSLQPNLQLSKKLKTVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SIMHRKFSSAPCEVYFPRNVTMEWHPHTPSCDICNTARRGLKRKSLQPNLQLSKKLKTVL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 DQARQARQHKRRAQARISSKDVMKKIANCSKIHLSTKLLAVDFPEHFVKSISCQICEHIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DQARQARQHKRRAQARISSKDVMKKIANCSKIHLSTKLLAVDFPEHFVKSISCQICEHIL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 ADPVETNCKHVFCRVCILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLSVLNSLMVKCPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ADPVETNCKHVFCRVCILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLSVLNSLMVKCPA
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 KECNEEVSLEKYNHHISSHKESKEIFVHINKGGRPRQHLLSLTRRAQKHRLRELKLQVKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KECNEEVSLEKYNHHISSHKESKEIFVHINKGGRPRQHLLSLTRRAQKHRLRELKLQVKA
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB9 FADKEEGGDVKSVCMTLFLLALRARNEHRQADELEAIMQGKGSGLQPAVCLAIRVNTFLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FADKEEGGDVKSVCMTLFLLALRARNEHRQADELEAIMQGKGSGLQPAVCLAIRVNTFLS
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB9 CSQYHKMYRTVKAITGRQIFQPLHALRNAEKVLLPGYHHFEWQPPLKNVSSSTDVGIIDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CSQYHKMYRTVKAITGRQIFQPLHALRNAEKVLLPGYHHFEWQPPLKNVSSSTDVGIIDG
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB9 LSGLSSSVDDYPVDTIAKRFRYDSALVSALMDMEEDILEGMRSQDLDDYLNGPFTVVVKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LSGLSSSVDDYPVDTIAKRFRYDSALVSALMDMEEDILEGMRSQDLDDYLNGPFTVVVKE
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB9 SCDGMGDVSEKHGSGPVVPEKAVRFSFTIMKITIAHSSQNVKVFEEAKPNSELCCKPLCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SCDGMGDVSEKHGSGPVVPEKAVRFSFTIMKITIAHSSQNVKVFEEAKPNSELCCKPLCL
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB9 MLADESDHETLTAILSPLIAEREAMKSSELMLELGGILRTFKFIFRGTGYDEKLVREVEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MLADESDHETLTAILSPLIAEREAMKSSELMLELGGILRTFKFIFRGTGYDEKLVREVEG
670 680 690 700 710 720
730 740 750 760 770 780
pF1KB9 LEASGSVYICTLCDATRLEASQNLVFHSITRSHAENLERYEVWRSNPYHESVEELRDRVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LEASGSVYICTLCDATRLEASQNLVFHSITRSHAENLERYEVWRSNPYHESVEELRDRVK
730 740 750 760 770 780
790 800 810 820 830 840
pF1KB9 GVSAKPFIETVPSIDALHCDIGNAAEFYKIFQLEIGEVYKNPNASKEERKRWQATLDKHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GVSAKPFIETVPSIDALHCDIGNAAEFYKIFQLEIGEVYKNPNASKEERKRWQATLDKHL
790 800 810 820 830 840
850 860 870 880 890 900
pF1KB9 RKKMNLKPIMRMNGNFARKLMTKETVDAVCELIPSEERHEALRELMDLYLKMKPVWRSSC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RKKMNLKPIMRMNGNFARKLMTKETVDAVCELIPSEERHEALRELMDLYLKMKPVWRSSC
850 860 870 880 890 900
910 920 930 940 950 960
pF1KB9 PAKECPESLCQYSFNSQRFAELLSTKFKYRYEGKITNYFHKTLAHVPEIIERDGSIGAWA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PAKECPESLCQYSFNSQRFAELLSTKFKYRYEGKITNYFHKTLAHVPEIIERDGSIGAWA
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KB9 SEGNESGNKLFRRFRKMNARQSKCYEMEDVLKHHWLYTSKYLQKFMNAHNALKTSGFTMN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SEGNESGNKLFRRFRKMNARQSKCYEMEDVLKHHWLYTSKYLQKFMNAHNALKTSGFTMN
970 980 990 1000 1010 1020
1030 1040
pF1KB9 PQASLGDPLGIEDSLESQDSMEF
:::::::::::::::::::::::
XP_011 PQASLGDPLGIEDSLESQDSMEF
1030 1040
>>NP_000439 (OMIM: 179615,233650,601457,603554,609889) V (1043 aa)
initn: 7053 init1: 7053 opt: 7053 Z-score: 6175.0 bits: 1154.2 E(85289): 0
Smith-Waterman score: 7053; 99.9% identity (100.0% similar) in 1043 aa overlap (1-1043:1-1043)
10 20 30 40 50 60
pF1KB9 MAASFPPTLGLSSAPDEIQHPHIKFSEWKFKLFRVRSFEKTPEEAQKEKKDSFEGKPSLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MAASFPPTLGLSSAPDEIQHPHIKFSEWKFKLFRVRSFEKTPEEAQKEKKDSFEGKPSLE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 QSPAVLDKADGQKPVPTQPLLKAHPKFSKKFHDNEKARGKAIHQANLRHLCRICGNSFRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 QSPAVLDKADGQKPVPTQPLLKAHPKFSKKFHDNEKARGKAIHQANLRHLCRICGNSFRA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 DEHNRRYPVHGPVDGKTLGLLRKKEKRATSWPDLIAKVFRIDVKADVDSIHPTEFCHNCW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 DEHNRRYPVHGPVDGKTLGLLRKKEKRATSWPDLIAKVFRIDVKADVDSIHPTEFCHNCW
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 SIMHRKFSSAPCEVYFPRNVTMEWHPHTPSCDICNTARRGLKRKSLQPNLQLSKKLKTVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 SIMHRKFSSAPCEVYFPRNVTMEWHPHTPSCDICNTARRGLKRKSLQPNLQLSKKLKTVL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 DQARQARQHKRRAQARISSKDVMKKIANCSKIHLSTKLLAVDFPEHFVKSISCQICEHIL
::::::::.:::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 DQARQARQRKRRAQARISSKDVMKKIANCSKIHLSTKLLAVDFPEHFVKSISCQICEHIL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 ADPVETNCKHVFCRVCILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLSVLNSLMVKCPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 ADPVETNCKHVFCRVCILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLSVLNSLMVKCPA
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 KECNEEVSLEKYNHHISSHKESKEIFVHINKGGRPRQHLLSLTRRAQKHRLRELKLQVKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 KECNEEVSLEKYNHHISSHKESKEIFVHINKGGRPRQHLLSLTRRAQKHRLRELKLQVKA
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB9 FADKEEGGDVKSVCMTLFLLALRARNEHRQADELEAIMQGKGSGLQPAVCLAIRVNTFLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 FADKEEGGDVKSVCMTLFLLALRARNEHRQADELEAIMQGKGSGLQPAVCLAIRVNTFLS
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB9 CSQYHKMYRTVKAITGRQIFQPLHALRNAEKVLLPGYHHFEWQPPLKNVSSSTDVGIIDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 CSQYHKMYRTVKAITGRQIFQPLHALRNAEKVLLPGYHHFEWQPPLKNVSSSTDVGIIDG
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB9 LSGLSSSVDDYPVDTIAKRFRYDSALVSALMDMEEDILEGMRSQDLDDYLNGPFTVVVKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 LSGLSSSVDDYPVDTIAKRFRYDSALVSALMDMEEDILEGMRSQDLDDYLNGPFTVVVKE
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB9 SCDGMGDVSEKHGSGPVVPEKAVRFSFTIMKITIAHSSQNVKVFEEAKPNSELCCKPLCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 SCDGMGDVSEKHGSGPVVPEKAVRFSFTIMKITIAHSSQNVKVFEEAKPNSELCCKPLCL
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB9 MLADESDHETLTAILSPLIAEREAMKSSELMLELGGILRTFKFIFRGTGYDEKLVREVEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MLADESDHETLTAILSPLIAEREAMKSSELMLELGGILRTFKFIFRGTGYDEKLVREVEG
670 680 690 700 710 720
730 740 750 760 770 780
pF1KB9 LEASGSVYICTLCDATRLEASQNLVFHSITRSHAENLERYEVWRSNPYHESVEELRDRVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 LEASGSVYICTLCDATRLEASQNLVFHSITRSHAENLERYEVWRSNPYHESVEELRDRVK
730 740 750 760 770 780
790 800 810 820 830 840
pF1KB9 GVSAKPFIETVPSIDALHCDIGNAAEFYKIFQLEIGEVYKNPNASKEERKRWQATLDKHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 GVSAKPFIETVPSIDALHCDIGNAAEFYKIFQLEIGEVYKNPNASKEERKRWQATLDKHL
790 800 810 820 830 840
850 860 870 880 890 900
pF1KB9 RKKMNLKPIMRMNGNFARKLMTKETVDAVCELIPSEERHEALRELMDLYLKMKPVWRSSC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 RKKMNLKPIMRMNGNFARKLMTKETVDAVCELIPSEERHEALRELMDLYLKMKPVWRSSC
850 860 870 880 890 900
910 920 930 940 950 960
pF1KB9 PAKECPESLCQYSFNSQRFAELLSTKFKYRYEGKITNYFHKTLAHVPEIIERDGSIGAWA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 PAKECPESLCQYSFNSQRFAELLSTKFKYRYEGKITNYFHKTLAHVPEIIERDGSIGAWA
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KB9 SEGNESGNKLFRRFRKMNARQSKCYEMEDVLKHHWLYTSKYLQKFMNAHNALKTSGFTMN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 SEGNESGNKLFRRFRKMNARQSKCYEMEDVLKHHWLYTSKYLQKFMNAHNALKTSGFTMN
970 980 990 1000 1010 1020
1030 1040
pF1KB9 PQASLGDPLGIEDSLESQDSMEF
:::::::::::::::::::::::
NP_000 PQASLGDPLGIEDSLESQDSMEF
1030 1040
>>XP_011524349 (OMIM: 610432,616260) PREDICTED: E3 ubiqu (191 aa)
initn: 200 init1: 175 opt: 199 Z-score: 188.8 bits: 44.1 E(85289): 0.00089
Smith-Waterman score: 204; 34.5% identity (56.9% similar) in 116 aa overlap (284-399:28-132)
260 270 280 290 300 310
pF1KB9 QARISSKDVMKKIANCSKIHLSTKLLAVDFPEHFVKSISCQICEHILADPVETNCKHVFC
:: : :..: .: ..: .::.: : ::::
XP_011 MGSVLSTDSGKSAPASATARALERRRDPELPVTSFDCAVCLEVLHQPVRTRCGHVFC
10 20 30 40 50
320 330 340 350 360 370
pF1KB9 RVCILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLSVLNSLMVKCPAKECNEEVSLEKYN
: :: :: :: :: .:.. :. . . ..: . .: ::. : : ..
XP_011 RSCIATSLKNNKWTCPYCR-AYLPSE-GVPATDVAKRMKSEYKNC--AECDTLVCLSEMR
60 70 80 90 100 110
380 390 400 410 420 430
pF1KB9 HHISSHKESKEIFVHINKGGRPRQHLLSLTRRAQKHRLRELKLQVKAFADKEEGGDVKSV
:: . .. .:.: : : :.:
XP_011 AHIRTCQK------YIDKYG-PLQELEETAARCVCPFCQRELYEDSLLDHCITHHRSERR
120 130 140 150 160
>>XP_011524348 (OMIM: 610432,616260) PREDICTED: E3 ubiqu (196 aa)
initn: 200 init1: 175 opt: 199 Z-score: 188.6 bits: 44.1 E(85289): 0.00091
Smith-Waterman score: 204; 34.5% identity (56.9% similar) in 116 aa overlap (284-399:28-132)
260 270 280 290 300 310
pF1KB9 QARISSKDVMKKIANCSKIHLSTKLLAVDFPEHFVKSISCQICEHILADPVETNCKHVFC
:: : :..: .: ..: .::.: : ::::
XP_011 MGSVLSTDSGKSAPASATARALERRRDPELPVTSFDCAVCLEVLHQPVRTRCGHVFC
10 20 30 40 50
320 330 340 350 360 370
pF1KB9 RVCILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLSVLNSLMVKCPAKECNEEVSLEKYN
: :: :: :: :: .:.. :. . . ..: . .: ::. : : ..
XP_011 RSCIATSLKNNKWTCPYCR-AYLPSE-GVPATDVAKRMKSEYKNC--AECDTLVCLSEMR
60 70 80 90 100 110
380 390 400 410 420 430
pF1KB9 HHISSHKESKEIFVHINKGGRPRQHLLSLTRRAQKHRLRELKLQVKAFADKEEGGDVKSV
:: . .. .:.: : : :.:
XP_011 AHIRTCQK------YIDKYG-PLQELEETAARCVCPFCQRELYEDSLLDHCITHHRSERR
120 130 140 150 160
>>NP_057355 (OMIM: 616319) E3 ubiquitin-protein ligase R (245 aa)
initn: 178 init1: 125 opt: 200 Z-score: 188.4 bits: 44.4 E(85289): 0.00093
Smith-Waterman score: 200; 27.4% identity (63.2% similar) in 95 aa overlap (293-384:18-110)
270 280 290 300 310 320
pF1KB9 MKKIANCSKIHLSTKLLAVDFPEHFVKSISCQICEHILADPVETN-CKHVFCRVCILRCL
: .:...: ::.:. :.::::: :.: .
NP_057 MAEDLSAATSYTEDDFYCPVCQEVLKTPVRTTACQHVFCRKCFLTAM
10 20 30 40
330 340 350 360 370
pF1KB9 KVMGSYCPSCRYPCFPTDLESPVKSF--LSVLNSLMVKCPAKECNEEVSLEKYNHHISSH
. :..:: :: . : ... ... .. .: . : ..... .. :: .:
NP_057 RESGAHCPLCRGNVTRRERACPERALDLENIMRKFSGSC--RCCAKQIKFYRMRHHYKSC
50 60 70 80 90 100
380 390 400 410 420 430
pF1KB9 KESKEIFVHINKGGRPRQHLLSLTRRAQKHRLRELKLQVKAFADKEEGGDVKSVCMTLFL
:. ..
NP_057 KKYQDEYGVSSIIPNFQISQDSVGNSNRSETSTSDNTETYQENTSSSGHPTFKCPLCQES
110 120 130 140 150 160
>>NP_001178253 (OMIM: 616319) E3 ubiquitin-protein ligas (245 aa)
initn: 178 init1: 125 opt: 200 Z-score: 188.4 bits: 44.4 E(85289): 0.00093
Smith-Waterman score: 200; 27.4% identity (63.2% similar) in 95 aa overlap (293-384:18-110)
270 280 290 300 310 320
pF1KB9 MKKIANCSKIHLSTKLLAVDFPEHFVKSISCQICEHILADPVETN-CKHVFCRVCILRCL
: .:...: ::.:. :.::::: :.: .
NP_001 MAEDLSAATSYTEDDFYCPVCQEVLKTPVRTTACQHVFCRKCFLTAM
10 20 30 40
330 340 350 360 370
pF1KB9 KVMGSYCPSCRYPCFPTDLESPVKSF--LSVLNSLMVKCPAKECNEEVSLEKYNHHISSH
. :..:: :: . : ... ... .. .: . : ..... .. :: .:
NP_001 RESGAHCPLCRGNVTRRERACPERALDLENIMRKFSGSC--RCCAKQIKFYRMRHHYKSC
50 60 70 80 90 100
380 390 400 410 420 430
pF1KB9 KESKEIFVHINKGGRPRQHLLSLTRRAQKHRLRELKLQVKAFADKEEGGDVKSVCMTLFL
:. ..
NP_001 KKYQDEYGVSSIIPNFQISQDSVGNSNRSETSTSDNTETYQENTSSSGHPTFKCPLCQES
110 120 130 140 150 160
>>XP_011524347 (OMIM: 610432,616260) PREDICTED: E3 ubiqu (227 aa)
initn: 230 init1: 175 opt: 199 Z-score: 187.9 bits: 44.2 E(85289): 0.00099
Smith-Waterman score: 204; 34.5% identity (56.9% similar) in 116 aa overlap (284-399:28-132)
260 270 280 290 300 310
pF1KB9 QARISSKDVMKKIANCSKIHLSTKLLAVDFPEHFVKSISCQICEHILADPVETNCKHVFC
:: : :..: .: ..: .::.: : ::::
XP_011 MGSVLSTDSGKSAPASATARALERRRDPELPVTSFDCAVCLEVLHQPVRTRCGHVFC
10 20 30 40 50
320 330 340 350 360 370
pF1KB9 RVCILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLSVLNSLMVKCPAKECNEEVSLEKYN
: :: :: :: :: .:.. :. . . ..: . .: ::. : : ..
XP_011 RSCIATSLKNNKWTCPYCR-AYLPSE-GVPATDVAKRMKSEYKNC--AECDTLVCLSEMR
60 70 80 90 100 110
380 390 400 410 420 430
pF1KB9 HHISSHKESKEIFVHINKGGRPRQHLLSLTRRAQKHRLRELKLQVKAFADKEEGGDVKSV
:: . .. .:.: : : :.:
XP_011 AHIRTCQK------YIDKYG-PLQELEETAARCVCPFCQRELYEDSLLDHCITHHRSERR
120 130 140 150 160
>>NP_060301 (OMIM: 610432,616260) E3 ubiquitin-protein l (232 aa)
initn: 230 init1: 175 opt: 199 Z-score: 187.8 bits: 44.2 E(85289): 0.001
Smith-Waterman score: 204; 34.5% identity (56.9% similar) in 116 aa overlap (284-399:28-132)
260 270 280 290 300 310
pF1KB9 QARISSKDVMKKIANCSKIHLSTKLLAVDFPEHFVKSISCQICEHILADPVETNCKHVFC
:: : :..: .: ..: .::.: : ::::
NP_060 MGSVLSTDSGKSAPASATARALERRRDPELPVTSFDCAVCLEVLHQPVRTRCGHVFC
10 20 30 40 50
320 330 340 350 360 370
pF1KB9 RVCILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLSVLNSLMVKCPAKECNEEVSLEKYN
: :: :: :: :: .:.. :. . . ..: . .: ::. : : ..
NP_060 RSCIATSLKNNKWTCPYCR-AYLPSE-GVPATDVAKRMKSEYKNC--AECDTLVCLSEMR
60 70 80 90 100 110
380 390 400 410 420 430
pF1KB9 HHISSHKESKEIFVHINKGGRPRQHLLSLTRRAQKHRLRELKLQVKAFADKEEGGDVKSV
:: . .. .:.: : : :.:
NP_060 AHIRTCQK------YIDKYG-PLQELEETAARCVCPFCQRELYEDSLLDHCITHHRSERR
120 130 140 150 160
>>XP_016864265 (OMIM: 609732) PREDICTED: E3 ubiquitin-pr (728 aa)
initn: 201 init1: 119 opt: 205 Z-score: 187.6 bits: 45.8 E(85289): 0.001
Smith-Waterman score: 205; 27.9% identity (56.6% similar) in 122 aa overlap (258-378:6-126)
230 240 250 260 270 280
pF1KB9 PNLQLSKKLKTVLDQARQARQHKRRAQARISSKDVMKKIANCSKIHLSTKLLAVDFPEHF
:..: : :.. : . ..::.
XP_016 MNQPESANDPEPLCAVCGQAHSLEENHFYSYPEEV
10 20 30
290 300 310 320 330 340
pF1KB9 VKSISCQICEHILADPVETNCKHVFCRVCILRCLKVMGSYCPSCRYPCFPTDLESPVKSF
.. :.:: . : ::..: : :..: .:. : : ..:: : : ..
XP_016 DDDLICHICLQALLDPLDTPCGHTYCTLCLTNFL-VEKDFCPMDRKPLVLQHCKKSSILV
40 50 60 70 80 90
350 360 370 380 390 400
pF1KB9 LSVLNSLMVKCPAKE-CNEEVSLEKYNHHISSHKESKEIFVHINKGGRPRQHLLSLTRRA
..::.:.: :: .: :.. .. .::...
XP_016 NKLLNKLLVTCPFREHCTQVLQRCDLEHHFQTSCKGASHYGLTKDRKRRSQDGCPDGCAS
100 110 120 130 140 150
410 420 430 440 450 460
pF1KB9 QKHRLRELKLQVKAFADKEEGGDVKSVCMTLFLLALRARNEHRQADELEAIMQGKGSGLQ
XP_016 LTATAPSPEVSAAATISLMTDEPGLDNPAYVSSAEDGQPAISPVDSGRSNRTRARPFERS
160 170 180 190 200 210
1043 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 09:54:21 2016 done: Sun Nov 6 09:54:23 2016
Total Scan time: 14.820 Total Display time: 0.210
Function used was FASTA [36.3.4 Apr, 2011]