FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9889, 1043 aa
  1>>>pF1KB9889 1043 - 1043 aa - 1043 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.8978+/-0.00116; mu= 15.3495+/- 0.070
 mean_var=137.9294+/-28.824, 0's: 0 Z-trim(105.9): 99  B-trim: 0 in 0/52
 Lambda= 0.109206
 statistics sampled from 8597 (8695) to 8597 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.621), E-opt: 0.2 (0.267), width:  16
 Scan time:  3.750

The best scores are:                                      opt bits E(32554)
CCDS7902.1 RAG1 gene_id:5896|Hs108|chr11           (1043) 7063 1125.6       0


>>CCDS7902.1 RAG1 gene_id:5896|Hs108|chr11                (1043 aa)
 initn: 7063 init1: 7063 opt: 7063  Z-score: 6020.4  bits: 1125.6 E(32554):    0
Smith-Waterman score: 7063; 100.0% identity (100.0% similar) in 1043 aa overlap (1-1043:1-1043)

               10        20        30        40        50        60
pF1KB9 MAASFPPTLGLSSAPDEIQHPHIKFSEWKFKLFRVRSFEKTPEEAQKEKKDSFEGKPSLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 MAASFPPTLGLSSAPDEIQHPHIKFSEWKFKLFRVRSFEKTPEEAQKEKKDSFEGKPSLE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 QSPAVLDKADGQKPVPTQPLLKAHPKFSKKFHDNEKARGKAIHQANLRHLCRICGNSFRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 QSPAVLDKADGQKPVPTQPLLKAHPKFSKKFHDNEKARGKAIHQANLRHLCRICGNSFRA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 DEHNRRYPVHGPVDGKTLGLLRKKEKRATSWPDLIAKVFRIDVKADVDSIHPTEFCHNCW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 DEHNRRYPVHGPVDGKTLGLLRKKEKRATSWPDLIAKVFRIDVKADVDSIHPTEFCHNCW
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 SIMHRKFSSAPCEVYFPRNVTMEWHPHTPSCDICNTARRGLKRKSLQPNLQLSKKLKTVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 SIMHRKFSSAPCEVYFPRNVTMEWHPHTPSCDICNTARRGLKRKSLQPNLQLSKKLKTVL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 DQARQARQHKRRAQARISSKDVMKKIANCSKIHLSTKLLAVDFPEHFVKSISCQICEHIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 DQARQARQHKRRAQARISSKDVMKKIANCSKIHLSTKLLAVDFPEHFVKSISCQICEHIL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 ADPVETNCKHVFCRVCILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLSVLNSLMVKCPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 ADPVETNCKHVFCRVCILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLSVLNSLMVKCPA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 KECNEEVSLEKYNHHISSHKESKEIFVHINKGGRPRQHLLSLTRRAQKHRLRELKLQVKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 KECNEEVSLEKYNHHISSHKESKEIFVHINKGGRPRQHLLSLTRRAQKHRLRELKLQVKA
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB9 FADKEEGGDVKSVCMTLFLLALRARNEHRQADELEAIMQGKGSGLQPAVCLAIRVNTFLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 FADKEEGGDVKSVCMTLFLLALRARNEHRQADELEAIMQGKGSGLQPAVCLAIRVNTFLS
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB9 CSQYHKMYRTVKAITGRQIFQPLHALRNAEKVLLPGYHHFEWQPPLKNVSSSTDVGIIDG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 CSQYHKMYRTVKAITGRQIFQPLHALRNAEKVLLPGYHHFEWQPPLKNVSSSTDVGIIDG
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB9 LSGLSSSVDDYPVDTIAKRFRYDSALVSALMDMEEDILEGMRSQDLDDYLNGPFTVVVKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 LSGLSSSVDDYPVDTIAKRFRYDSALVSALMDMEEDILEGMRSQDLDDYLNGPFTVVVKE
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB9 SCDGMGDVSEKHGSGPVVPEKAVRFSFTIMKITIAHSSQNVKVFEEAKPNSELCCKPLCL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 SCDGMGDVSEKHGSGPVVPEKAVRFSFTIMKITIAHSSQNVKVFEEAKPNSELCCKPLCL
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB9 MLADESDHETLTAILSPLIAEREAMKSSELMLELGGILRTFKFIFRGTGYDEKLVREVEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 MLADESDHETLTAILSPLIAEREAMKSSELMLELGGILRTFKFIFRGTGYDEKLVREVEG
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KB9 LEASGSVYICTLCDATRLEASQNLVFHSITRSHAENLERYEVWRSNPYHESVEELRDRVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 LEASGSVYICTLCDATRLEASQNLVFHSITRSHAENLERYEVWRSNPYHESVEELRDRVK
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KB9 GVSAKPFIETVPSIDALHCDIGNAAEFYKIFQLEIGEVYKNPNASKEERKRWQATLDKHL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 GVSAKPFIETVPSIDALHCDIGNAAEFYKIFQLEIGEVYKNPNASKEERKRWQATLDKHL
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KB9 RKKMNLKPIMRMNGNFARKLMTKETVDAVCELIPSEERHEALRELMDLYLKMKPVWRSSC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 RKKMNLKPIMRMNGNFARKLMTKETVDAVCELIPSEERHEALRELMDLYLKMKPVWRSSC
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KB9 PAKECPESLCQYSFNSQRFAELLSTKFKYRYEGKITNYFHKTLAHVPEIIERDGSIGAWA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 PAKECPESLCQYSFNSQRFAELLSTKFKYRYEGKITNYFHKTLAHVPEIIERDGSIGAWA
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KB9 SEGNESGNKLFRRFRKMNARQSKCYEMEDVLKHHWLYTSKYLQKFMNAHNALKTSGFTMN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 SEGNESGNKLFRRFRKMNARQSKCYEMEDVLKHHWLYTSKYLQKFMNAHNALKTSGFTMN
              970       980       990      1000      1010      1020

             1030      1040   
pF1KB9 PQASLGDPLGIEDSLESQDSMEF
       :::::::::::::::::::::::
CCDS79 PQASLGDPLGIEDSLESQDSMEF
             1030      1040   




1043 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 09:54:20 2016 done: Sun Nov  6 09:54:21 2016
 Total Scan time:  3.750 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]