FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9813, 272 aa
  1>>>pF1KB9813 272 - 272 aa - 272 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.6023+/-0.000676; mu= 10.5821+/- 0.041
 mean_var=114.6554+/-23.037, 0's: 0 Z-trim(114.2): 8  B-trim: 3 in 1/50
 Lambda= 0.119778
 statistics sampled from 14785 (14791) to 14785 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.781), E-opt: 0.2 (0.454), width:  16
 Scan time:  2.550

The best scores are:                                      opt bits E(32554)
CCDS10887.1 EXOSC6 gene_id:118460|Hs108|chr16      ( 272) 1805 321.8 3.2e-88


>>CCDS10887.1 EXOSC6 gene_id:118460|Hs108|chr16           (272 aa)
 initn: 1805 init1: 1805 opt: 1805  Z-score: 1697.4  bits: 321.8 E(32554): 3.2e-88
Smith-Waterman score: 1805; 100.0% identity (100.0% similar) in 272 aa overlap (1-272:1-272)

               10        20        30        40        50        60
pF1KB9 MPGDHRRIRGPEESQPPQLYAADEEEAPGTRDPTRLRPVYARAGLLSQAKGSAYLEAGGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MPGDHRRIRGPEESQPPQLYAADEEEAPGTRDPTRLRPVYARAGLLSQAKGSAYLEAGGT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 KVLCAVSGPRQAEGGERGGGPAGAGGEAPAALRGRLLCDFRRAPFAGRRRRAPPGGCEER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 KVLCAVSGPRQAEGGERGGGPAGAGGEAPAALRGRLLCDFRRAPFAGRRRRAPPGGCEER
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 ELALALQEALEPAVRLGRYPRAQLEVSALLLEDGGSALAAALTAAALALADAGVEMYDLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 ELALALQEALEPAVRLGRYPRAQLEVSALLLEDGGSALAAALTAAALALADAGVEMYDLV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 VGCGLSLAPGPAPTWLLDPTRLEEERAAAGLTVALMPVLNQVAGLLGSGEGGLTESWAEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 VGCGLSLAPGPAPTWLLDPTRLEEERAAAGLTVALMPVLNQVAGLLGSGEGGLTESWAEA
              190       200       210       220       230       240

              250       260       270  
pF1KB9 VRLGLEGCQRLYPVLQQSLVRAARRRGAAAQP
       ::::::::::::::::::::::::::::::::
CCDS10 VRLGLEGCQRLYPVLQQSLVRAARRRGAAAQP
              250       260       270  




272 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 07:38:48 2016 done: Tue Nov  8 07:38:49 2016
 Total Scan time:  2.550 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]