Result of FASTA (omim) for
pFN21AB9741
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9741, 517 aa
1>>>pF1KB9741 517 - 517 aa - 517 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.3440+/-0.000307; mu= 18.6939+/- 0.019
mean_var=77.9942+/-16.034, 0's: 0 Z-trim(117.4): 27 B-trim: 1756 in 2/55
Lambda= 0.145226
statistics sampled from 29391 (29421) to 29391 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.714), E-opt: 0.2 (0.345), width: 16
Scan time: 10.680
The best scores are: opt bits E(85289)
NP_055091 (OMIM: 616104) recombining binding prote ( 517) 3532 749.5 5.5e-216
NP_001268378 (OMIM: 616104) recombining binding pr ( 516) 3513 745.5 8.6e-215
NP_001268377 (OMIM: 616104) recombining binding pr ( 471) 2903 617.7 2.4e-176
XP_011526823 (OMIM: 616104) PREDICTED: recombining ( 455) 2810 598.2 1.7e-170
XP_011526825 (OMIM: 616104) PREDICTED: recombining ( 412) 2329 497.4 3.4e-140
XP_011526824 (OMIM: 616104) PREDICTED: recombining ( 436) 2329 497.4 3.6e-140
NP_976028 (OMIM: 147183,614814) recombining bindin ( 485) 1381 298.8 2.4e-80
NP_976029 (OMIM: 147183,614814) recombining bindin ( 486) 1381 298.8 2.4e-80
XP_016863662 (OMIM: 147183,614814) PREDICTED: reco ( 486) 1381 298.8 2.4e-80
XP_016863663 (OMIM: 147183,614814) PREDICTED: reco ( 486) 1381 298.8 2.4e-80
XP_011512142 (OMIM: 147183,614814) PREDICTED: reco ( 486) 1381 298.8 2.4e-80
XP_016863664 (OMIM: 147183,614814) PREDICTED: reco ( 486) 1381 298.8 2.4e-80
XP_005248218 (OMIM: 147183,614814) PREDICTED: reco ( 486) 1381 298.8 2.4e-80
NP_056958 (OMIM: 147183,614814) recombining bindin ( 487) 1381 298.8 2.4e-80
NP_005340 (OMIM: 147183,614814) recombining bindin ( 500) 1381 298.8 2.5e-80
XP_016863661 (OMIM: 147183,614814) PREDICTED: reco ( 500) 1381 298.8 2.5e-80
XP_016863660 (OMIM: 147183,614814) PREDICTED: reco ( 501) 1381 298.8 2.5e-80
XP_016863659 (OMIM: 147183,614814) PREDICTED: reco ( 506) 1381 298.8 2.5e-80
>>NP_055091 (OMIM: 616104) recombining binding protein s (517 aa)
initn: 3532 init1: 3532 opt: 3532 Z-score: 3998.7 bits: 749.5 E(85289): 5.5e-216
Smith-Waterman score: 3532; 100.0% identity (100.0% similar) in 517 aa overlap (1-517:1-517)
10 20 30 40 50 60
pF1KB9 MDPAGAADPSVPPNPLTHLSLQDRSEMQLQSEADRRSLPGTWTRSSPEHTTILRGGVRRC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 MDPAGAADPSVPPNPLTHLSLQDRSEMQLQSEADRRSLPGTWTRSSPEHTTILRGGVRRC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 LQQQCEQTVRILHAKVAQKSYGNEKRFFCPPPCVYLSGPGWRVKPGQDQAHQAGETGPTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 LQQQCEQTVRILHAKVAQKSYGNEKRFFCPPPCVYLSGPGWRVKPGQDQAHQAGETGPTV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 CGYMGLDSASGSATETQKLNFEQQPDSREFGCAKTLYISDADKRKHFRLVLRLVLRGGRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 CGYMGLDSASGSATETQKLNFEQQPDSREFGCAKTLYISDADKRKHFRLVLRLVLRGGRE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 LGTFHSRLIKVISKPSQKKQSLKNTDLCISSGSKVSLFNRLRSQTVSTRYLSVEDGAFVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 LGTFHSRLIKVISKPSQKKQSLKNTDLCISSGSKVSLFNRLRSQTVSTRYLSVEDGAFVA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 SARQWAAFTLHLADGHSAQGDFPPREGYVRYGSLVQLVCTVTGITLPPMIIRKVAKQCAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 SARQWAAFTLHLADGHSAQGDFPPREGYVRYGSLVQLVCTVTGITLPPMIIRKVAKQCAL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 LDVDEPISQLHKCAFQFPGSPPGGGGTYLCLATEKVVQFQASPCPKEANRALLNDSSCWT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 LDVDEPISQLHKCAFQFPGSPPGGGGTYLCLATEKVVQFQASPCPKEANRALLNDSSCWT
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 IIGTESVEFSFSTSLACTLEPVTPVPLISTLELSGGGDVATLELHGENFHAGLKVWFGDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 IIGTESVEFSFSTSLACTLEPVTPVPLISTLELSGGGDVATLELHGENFHAGLKVWFGDV
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB9 EAETMYRSPRSLVCVVPDVAAFCSDWRWLRAPITIPMSLVRADGLFYPSAFSFTYTPEYS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 EAETMYRSPRSLVCVVPDVAAFCSDWRWLRAPITIPMSLVRADGLFYPSAFSFTYTPEYS
430 440 450 460 470 480
490 500 510
pF1KB9 VRPGHPGVPEPATDADALLESIHQEFTRTNFHLFIQT
:::::::::::::::::::::::::::::::::::::
NP_055 VRPGHPGVPEPATDADALLESIHQEFTRTNFHLFIQT
490 500 510
>>NP_001268378 (OMIM: 616104) recombining binding protei (516 aa)
initn: 3511 init1: 2896 opt: 3513 Z-score: 3977.2 bits: 745.5 E(85289): 8.6e-215
Smith-Waterman score: 3513; 99.8% identity (99.8% similar) in 517 aa overlap (1-517:1-516)
10 20 30 40 50 60
pF1KB9 MDPAGAADPSVPPNPLTHLSLQDRSEMQLQSEADRRSLPGTWTRSSPEHTTILRGGVRRC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDPAGAADPSVPPNPLTHLSLQDRSEMQLQSEADRRSLPGTWTRSSPEHTTILRGGVRRC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 LQQQCEQTVRILHAKVAQKSYGNEKRFFCPPPCVYLSGPGWRVKPGQDQAHQAGETGPTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LQQQCEQTVRILHAKVAQKSYGNEKRFFCPPPCVYLSGPGWRVKPGQDQAHQAGETGPTV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 CGYMGLDSASGSATETQKLNFEQQPDSREFGCAKTLYISDADKRKHFRLVLRLVLRGGRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CGYMGLDSASGSATETQKLNFEQQPDSREFGCAKTLYISDADKRKHFRLVLRLVLRGGRE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 LGTFHSRLIKVISKPSQKKQSLKNTDLCISSGSKVSLFNRLRSQTVSTRYLSVEDGAFVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LGTFHSRLIKVISKPSQKKQSLKNTDLCISSGSKVSLFNRLRSQTVSTRYLSVEDGAFVA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 SARQWAAFTLHLADGHSAQGDFPPREGYVRYGSLVQLVCTVTGITLPPMIIRKVAKQCAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SARQWAAFTLHLADGHSAQGDFPPREGYVRYGSLVQLVCTVTGITLPPMIIRKVAKQCAL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 LDVDEPISQLHKCAFQFPGSPPGGGGTYLCLATEKVVQFQASPCPKEANRALLNDSSCWT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LDVDEPISQLHKCAFQFPGSPPGGGGTYLCLATEKVVQFQASPCPKEANRALLNDSSCWT
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 IIGTESVEFSFSTSLACTLEPVTPVPLISTLELSGGGDVATLELHGENFHAGLKVWFGDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IIGTESVEFSFSTSLACTLEPVTPVPLISTLELSGGGDVATLELHGENFHAGLKVWFGDV
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB9 EAETMYRSPRSLVCVVPDVAAFCSDWRWLRAPITIPMSLVRADGLFYPSAFSFTYTPEYS
:::::: :::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EAETMY-SPRSLVCVVPDVAAFCSDWRWLRAPITIPMSLVRADGLFYPSAFSFTYTPEYS
430 440 450 460 470
490 500 510
pF1KB9 VRPGHPGVPEPATDADALLESIHQEFTRTNFHLFIQT
:::::::::::::::::::::::::::::::::::::
NP_001 VRPGHPGVPEPATDADALLESIHQEFTRTNFHLFIQT
480 490 500 510
>>NP_001268377 (OMIM: 616104) recombining binding protei (471 aa)
initn: 2903 init1: 2903 opt: 2903 Z-score: 3287.0 bits: 617.7 E(85289): 2.4e-176
Smith-Waterman score: 2903; 100.0% identity (100.0% similar) in 427 aa overlap (1-427:1-427)
10 20 30 40 50 60
pF1KB9 MDPAGAADPSVPPNPLTHLSLQDRSEMQLQSEADRRSLPGTWTRSSPEHTTILRGGVRRC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDPAGAADPSVPPNPLTHLSLQDRSEMQLQSEADRRSLPGTWTRSSPEHTTILRGGVRRC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 LQQQCEQTVRILHAKVAQKSYGNEKRFFCPPPCVYLSGPGWRVKPGQDQAHQAGETGPTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LQQQCEQTVRILHAKVAQKSYGNEKRFFCPPPCVYLSGPGWRVKPGQDQAHQAGETGPTV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 CGYMGLDSASGSATETQKLNFEQQPDSREFGCAKTLYISDADKRKHFRLVLRLVLRGGRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CGYMGLDSASGSATETQKLNFEQQPDSREFGCAKTLYISDADKRKHFRLVLRLVLRGGRE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 LGTFHSRLIKVISKPSQKKQSLKNTDLCISSGSKVSLFNRLRSQTVSTRYLSVEDGAFVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LGTFHSRLIKVISKPSQKKQSLKNTDLCISSGSKVSLFNRLRSQTVSTRYLSVEDGAFVA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 SARQWAAFTLHLADGHSAQGDFPPREGYVRYGSLVQLVCTVTGITLPPMIIRKVAKQCAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SARQWAAFTLHLADGHSAQGDFPPREGYVRYGSLVQLVCTVTGITLPPMIIRKVAKQCAL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 LDVDEPISQLHKCAFQFPGSPPGGGGTYLCLATEKVVQFQASPCPKEANRALLNDSSCWT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LDVDEPISQLHKCAFQFPGSPPGGGGTYLCLATEKVVQFQASPCPKEANRALLNDSSCWT
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 IIGTESVEFSFSTSLACTLEPVTPVPLISTLELSGGGDVATLELHGENFHAGLKVWFGDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IIGTESVEFSFSTSLACTLEPVTPVPLISTLELSGGGDVATLELHGENFHAGLKVWFGDV
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB9 EAETMYRSPRSLVCVVPDVAAFCSDWRWLRAPITIPMSLVRADGLFYPSAFSFTYTPEYS
:::::::
NP_001 EAETMYRYGVEPAVPGVRGAGRGGLLQRLALAARSHHNPHEPGARRRALLP
430 440 450 460 470
>>XP_011526823 (OMIM: 616104) PREDICTED: recombining bin (455 aa)
initn: 2810 init1: 2810 opt: 2810 Z-score: 3181.9 bits: 598.2 E(85289): 1.7e-170
Smith-Waterman score: 2810; 100.0% identity (100.0% similar) in 414 aa overlap (1-414:1-414)
10 20 30 40 50 60
pF1KB9 MDPAGAADPSVPPNPLTHLSLQDRSEMQLQSEADRRSLPGTWTRSSPEHTTILRGGVRRC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MDPAGAADPSVPPNPLTHLSLQDRSEMQLQSEADRRSLPGTWTRSSPEHTTILRGGVRRC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 LQQQCEQTVRILHAKVAQKSYGNEKRFFCPPPCVYLSGPGWRVKPGQDQAHQAGETGPTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LQQQCEQTVRILHAKVAQKSYGNEKRFFCPPPCVYLSGPGWRVKPGQDQAHQAGETGPTV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 CGYMGLDSASGSATETQKLNFEQQPDSREFGCAKTLYISDADKRKHFRLVLRLVLRGGRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CGYMGLDSASGSATETQKLNFEQQPDSREFGCAKTLYISDADKRKHFRLVLRLVLRGGRE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 LGTFHSRLIKVISKPSQKKQSLKNTDLCISSGSKVSLFNRLRSQTVSTRYLSVEDGAFVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LGTFHSRLIKVISKPSQKKQSLKNTDLCISSGSKVSLFNRLRSQTVSTRYLSVEDGAFVA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 SARQWAAFTLHLADGHSAQGDFPPREGYVRYGSLVQLVCTVTGITLPPMIIRKVAKQCAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SARQWAAFTLHLADGHSAQGDFPPREGYVRYGSLVQLVCTVTGITLPPMIIRKVAKQCAL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 LDVDEPISQLHKCAFQFPGSPPGGGGTYLCLATEKVVQFQASPCPKEANRALLNDSSCWT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LDVDEPISQLHKCAFQFPGSPPGGGGTYLCLATEKVVQFQASPCPKEANRALLNDSSCWT
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 IIGTESVEFSFSTSLACTLEPVTPVPLISTLELSGGGDVATLELHGENFHAGLKVWFGDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IIGTESVEFSFSTSLACTLEPVTPVPLISTLELSGGGDVATLELHGENFHAGLKEPAVPG
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB9 EAETMYRSPRSLVCVVPDVAAFCSDWRWLRAPITIPMSLVRADGLFYPSAFSFTYTPEYS
XP_011 VRGAGRGGLLQRLALAARSHHNPHEPGARRRALLP
430 440 450
>>XP_011526825 (OMIM: 616104) PREDICTED: recombining bin (412 aa)
initn: 2354 init1: 2329 opt: 2329 Z-score: 2637.9 bits: 497.4 E(85289): 3.4e-140
Smith-Waterman score: 2329; 99.4% identity (99.7% similar) in 343 aa overlap (1-343:1-343)
10 20 30 40 50 60
pF1KB9 MDPAGAADPSVPPNPLTHLSLQDRSEMQLQSEADRRSLPGTWTRSSPEHTTILRGGVRRC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MDPAGAADPSVPPNPLTHLSLQDRSEMQLQSEADRRSLPGTWTRSSPEHTTILRGGVRRC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 LQQQCEQTVRILHAKVAQKSYGNEKRFFCPPPCVYLSGPGWRVKPGQDQAHQAGETGPTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LQQQCEQTVRILHAKVAQKSYGNEKRFFCPPPCVYLSGPGWRVKPGQDQAHQAGETGPTV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 CGYMGLDSASGSATETQKLNFEQQPDSREFGCAKTLYISDADKRKHFRLVLRLVLRGGRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CGYMGLDSASGSATETQKLNFEQQPDSREFGCAKTLYISDADKRKHFRLVLRLVLRGGRE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 LGTFHSRLIKVISKPSQKKQSLKNTDLCISSGSKVSLFNRLRSQTVSTRYLSVEDGAFVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LGTFHSRLIKVISKPSQKKQSLKNTDLCISSGSKVSLFNRLRSQTVSTRYLSVEDGAFVA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 SARQWAAFTLHLADGHSAQGDFPPREGYVRYGSLVQLVCTVTGITLPPMIIRKVAKQCAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SARQWAAFTLHLADGHSAQGDFPPREGYVRYGSLVQLVCTVTGITLPPMIIRKVAKQCAL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 LDVDEPISQLHKCAFQFPGSPPGGGGTYLCLATEKVVQFQASPCPKEANRALLNDSSCWT
:::::::::::::::::::::::::::::::::::::::: .:
XP_011 LDVDEPISQLHKCAFQFPGSPPGGGGTYLCLATEKVVQFQHQPGVYPGAGHSGASHQHPR
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 IIGTESVEFSFSTSLACTLEPVTPVPLISTLELSGGGDVATLELHGENFHAGLKVWFGDV
XP_011 AERRGRRGHAGAPRRELPRGAQGARGPWCAWCRTWRPSAATGAGCALPSQSP
370 380 390 400 410
>>XP_011526824 (OMIM: 616104) PREDICTED: recombining bin (436 aa)
initn: 2329 init1: 2329 opt: 2329 Z-score: 2637.5 bits: 497.4 E(85289): 3.6e-140
Smith-Waterman score: 2329; 99.4% identity (99.7% similar) in 343 aa overlap (1-343:1-343)
10 20 30 40 50 60
pF1KB9 MDPAGAADPSVPPNPLTHLSLQDRSEMQLQSEADRRSLPGTWTRSSPEHTTILRGGVRRC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MDPAGAADPSVPPNPLTHLSLQDRSEMQLQSEADRRSLPGTWTRSSPEHTTILRGGVRRC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 LQQQCEQTVRILHAKVAQKSYGNEKRFFCPPPCVYLSGPGWRVKPGQDQAHQAGETGPTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LQQQCEQTVRILHAKVAQKSYGNEKRFFCPPPCVYLSGPGWRVKPGQDQAHQAGETGPTV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 CGYMGLDSASGSATETQKLNFEQQPDSREFGCAKTLYISDADKRKHFRLVLRLVLRGGRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CGYMGLDSASGSATETQKLNFEQQPDSREFGCAKTLYISDADKRKHFRLVLRLVLRGGRE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 LGTFHSRLIKVISKPSQKKQSLKNTDLCISSGSKVSLFNRLRSQTVSTRYLSVEDGAFVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LGTFHSRLIKVISKPSQKKQSLKNTDLCISSGSKVSLFNRLRSQTVSTRYLSVEDGAFVA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 SARQWAAFTLHLADGHSAQGDFPPREGYVRYGSLVQLVCTVTGITLPPMIIRKVAKQCAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SARQWAAFTLHLADGHSAQGDFPPREGYVRYGSLVQLVCTVTGITLPPMIIRKVAKQCAL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 LDVDEPISQLHKCAFQFPGSPPGGGGTYLCLATEKVVQFQASPCPKEANRALLNDSSCWT
:::::::::::::::::::::::::::::::::::::::: .:
XP_011 LDVDEPISQLHKCAFQFPGSPPGGGGTYLCLATEKVVQFQHQPGVYPGAGHSGASHQHPR
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 IIGTESVEFSFSTSLACTLEPVTPVPLISTLELSGGGDVATLELHGENFHAGLKVWFGDV
XP_011 AERRGRRGHAGAPRRELPRGAQGVVWGRGGRNHVQEPAVPGVRGAGRGGLLQRLALAARS
370 380 390 400 410 420
>>NP_976028 (OMIM: 147183,614814) recombining binding pr (485 aa)
initn: 1356 init1: 682 opt: 1381 Z-score: 1563.4 bits: 298.8 E(85289): 2.4e-80
Smith-Waterman score: 1648; 54.8% identity (78.1% similar) in 438 aa overlap (47-483:11-437)
20 30 40 50 60 70
pF1KB9 THLSLQDRSEMQLQSEADRRSLPGTWTRSSPEHTTILRGGVRRCLQQQCEQTVRILHAKV
: . : ..: :... .::: ::::::
NP_976 MGGCRKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKV
10 20 30 40
80 90 100 110 120 130
pF1KB9 AQKSYGNEKRFFCPPPCVYLSGPGWRVKPGQDQAHQAGETGPTVCGYMGLDSASGSATET
:::::::::::::::::::: : ::. : : . .: :...:. . : :
NP_976 AQKSYGNEKRFFCPPPCVYLMGSGWKKKKEQMERDGCSEQESQPCAFIGIGN---SDQEM
50 60 70 80 90
140 150 160 170 180 190
pF1KB9 QKLNFEQQPDSREFGCAKTLYISDADKRKHFRLVLRLVLRGGRELGTFHSRLIKVISKPS
:.::.: .... ::::::::.:::::: : ... .. ..:.: :. ::::::::
NP_976 QQLNLE----GKNYCTAKTLYISDSDKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPS
100 110 120 130 140 150
200 210 220 230 240 250
pF1KB9 QKKQSLKNTDLCISSGSKVSLFNRLRSQTVSTRYLSVEDGAFVASARQWAAFTLHLADGH
.:::::::.::::.::.::.::::::::::::::: :: : : ::..::.:: .:: :
NP_976 KKKQSLKNADLCIASGTKVALFNRLRSQTVSTRYLHVEGGNFHASSQQWGAFFIHLLDDD
160 170 180 190 200 210
260 270 280 290 300 310
pF1KB9 SAQGD-FPPREGYVRYGSLVQLVCTVTGITLPPMIIRKVAKQCALLDVDEPISQLHKCAF
..:. : :.::..::. :.:::.:::..:: .::::: :: ::::.:.:.::::::::
NP_976 ESEGEEFTVRDGYIHYGQTVKLVCSVTGMALPRLIIRKVDKQTALLDADDPVSQLHKCAF
220 230 240 250 260 270
320 330 340 350 360 370
pF1KB9 QFPGSPPGGGGTYLCLATEKVVQFQASPCPKEANRALLNDSSCWTIIGTESVEFSFSTSL
. . ::::. :...::::.::::: :. ..::.. ::::.:...:..: ..
NP_976 YLKDTER----MYLCLSQERIIQFQATPCPKEPNKEMINDGASWTIISTDKAEYTFYEGM
280 290 300 310 320
380 390 400 410 420 430
pF1KB9 ACTLEPVTPVPLISTLELSGGGDVATLELHGENFHAGLKVWFGDVEAETMYRSPRSLVCV
. .: ::::::.. .:.:.:::::: ::: :.:: .:.::::::::::::: .:..::
NP_976 GPVLAPVTPVPVVESLQLNGGGDVAMLELTGQNFTPNLRVWFGDVEAETMYRCGESMLCV
330 340 350 360 370 380
440 450 460 470 480 490
pF1KB9 VPDVAAFCSDWRWLRAPITIPMSLVRADGLFYPSAFSFTYTPEYSVRPGHPGVPEPATDA
:::..:: :::.: :. .:..::: ::..: ....:::::: . ::
NP_976 VPDISAFREGWRWVRQPVQVPVTLVRNDGIIYSTSLTFTYTPEPGPRPHCSAAGAILRAN
390 400 410 420 430 440
500 510
pF1KB9 DALLESIHQEFTRTNFHLFIQT
NP_976 SSQVPPNESNTNSEGSYTNASTNSTSVTSSTATVVS
450 460 470 480
>>NP_976029 (OMIM: 147183,614814) recombining binding pr (486 aa)
initn: 1356 init1: 682 opt: 1381 Z-score: 1563.4 bits: 298.8 E(85289): 2.4e-80
Smith-Waterman score: 1648; 54.8% identity (78.1% similar) in 438 aa overlap (47-483:12-438)
20 30 40 50 60 70
pF1KB9 THLSLQDRSEMQLQSEADRRSLPGTWTRSSPEHTTILRGGVRRCLQQQCEQTVRILHAKV
: . : ..: :... .::: ::::::
NP_976 MAWIKRKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKV
10 20 30 40
80 90 100 110 120 130
pF1KB9 AQKSYGNEKRFFCPPPCVYLSGPGWRVKPGQDQAHQAGETGPTVCGYMGLDSASGSATET
:::::::::::::::::::: : ::. : : . .: :...:. . : :
NP_976 AQKSYGNEKRFFCPPPCVYLMGSGWKKKKEQMERDGCSEQESQPCAFIGIGN---SDQEM
50 60 70 80 90
140 150 160 170 180 190
pF1KB9 QKLNFEQQPDSREFGCAKTLYISDADKRKHFRLVLRLVLRGGRELGTFHSRLIKVISKPS
:.::.: .... ::::::::.:::::: : ... .. ..:.: :. ::::::::
NP_976 QQLNLE----GKNYCTAKTLYISDSDKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPS
100 110 120 130 140 150
200 210 220 230 240 250
pF1KB9 QKKQSLKNTDLCISSGSKVSLFNRLRSQTVSTRYLSVEDGAFVASARQWAAFTLHLADGH
.:::::::.::::.::.::.::::::::::::::: :: : : ::..::.:: .:: :
NP_976 KKKQSLKNADLCIASGTKVALFNRLRSQTVSTRYLHVEGGNFHASSQQWGAFFIHLLDDD
160 170 180 190 200 210
260 270 280 290 300 310
pF1KB9 SAQGD-FPPREGYVRYGSLVQLVCTVTGITLPPMIIRKVAKQCALLDVDEPISQLHKCAF
..:. : :.::..::. :.:::.:::..:: .::::: :: ::::.:.:.::::::::
NP_976 ESEGEEFTVRDGYIHYGQTVKLVCSVTGMALPRLIIRKVDKQTALLDADDPVSQLHKCAF
220 230 240 250 260 270
320 330 340 350 360 370
pF1KB9 QFPGSPPGGGGTYLCLATEKVVQFQASPCPKEANRALLNDSSCWTIIGTESVEFSFSTSL
. . ::::. :...::::.::::: :. ..::.. ::::.:...:..: ..
NP_976 YLKDTER----MYLCLSQERIIQFQATPCPKEPNKEMINDGASWTIISTDKAEYTFYEGM
280 290 300 310 320 330
380 390 400 410 420 430
pF1KB9 ACTLEPVTPVPLISTLELSGGGDVATLELHGENFHAGLKVWFGDVEAETMYRSPRSLVCV
. .: ::::::.. .:.:.:::::: ::: :.:: .:.::::::::::::: .:..::
NP_976 GPVLAPVTPVPVVESLQLNGGGDVAMLELTGQNFTPNLRVWFGDVEAETMYRCGESMLCV
340 350 360 370 380 390
440 450 460 470 480 490
pF1KB9 VPDVAAFCSDWRWLRAPITIPMSLVRADGLFYPSAFSFTYTPEYSVRPGHPGVPEPATDA
:::..:: :::.: :. .:..::: ::..: ....:::::: . ::
NP_976 VPDISAFREGWRWVRQPVQVPVTLVRNDGIIYSTSLTFTYTPEPGPRPHCSAAGAILRAN
400 410 420 430 440 450
500 510
pF1KB9 DALLESIHQEFTRTNFHLFIQT
NP_976 SSQVPPNESNTNSEGSYTNASTNSTSVTSSTATVVS
460 470 480
>>XP_016863662 (OMIM: 147183,614814) PREDICTED: recombin (486 aa)
initn: 1356 init1: 682 opt: 1381 Z-score: 1563.4 bits: 298.8 E(85289): 2.4e-80
Smith-Waterman score: 1648; 54.8% identity (78.1% similar) in 438 aa overlap (47-483:12-438)
20 30 40 50 60 70
pF1KB9 THLSLQDRSEMQLQSEADRRSLPGTWTRSSPEHTTILRGGVRRCLQQQCEQTVRILHAKV
: . : ..: :... .::: ::::::
XP_016 MAWIKRKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKV
10 20 30 40
80 90 100 110 120 130
pF1KB9 AQKSYGNEKRFFCPPPCVYLSGPGWRVKPGQDQAHQAGETGPTVCGYMGLDSASGSATET
:::::::::::::::::::: : ::. : : . .: :...:. . : :
XP_016 AQKSYGNEKRFFCPPPCVYLMGSGWKKKKEQMERDGCSEQESQPCAFIGIGN---SDQEM
50 60 70 80 90
140 150 160 170 180 190
pF1KB9 QKLNFEQQPDSREFGCAKTLYISDADKRKHFRLVLRLVLRGGRELGTFHSRLIKVISKPS
:.::.: .... ::::::::.:::::: : ... .. ..:.: :. ::::::::
XP_016 QQLNLE----GKNYCTAKTLYISDSDKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPS
100 110 120 130 140 150
200 210 220 230 240 250
pF1KB9 QKKQSLKNTDLCISSGSKVSLFNRLRSQTVSTRYLSVEDGAFVASARQWAAFTLHLADGH
.:::::::.::::.::.::.::::::::::::::: :: : : ::..::.:: .:: :
XP_016 KKKQSLKNADLCIASGTKVALFNRLRSQTVSTRYLHVEGGNFHASSQQWGAFFIHLLDDD
160 170 180 190 200 210
260 270 280 290 300 310
pF1KB9 SAQGD-FPPREGYVRYGSLVQLVCTVTGITLPPMIIRKVAKQCALLDVDEPISQLHKCAF
..:. : :.::..::. :.:::.:::..:: .::::: :: ::::.:.:.::::::::
XP_016 ESEGEEFTVRDGYIHYGQTVKLVCSVTGMALPRLIIRKVDKQTALLDADDPVSQLHKCAF
220 230 240 250 260 270
320 330 340 350 360 370
pF1KB9 QFPGSPPGGGGTYLCLATEKVVQFQASPCPKEANRALLNDSSCWTIIGTESVEFSFSTSL
. . ::::. :...::::.::::: :. ..::.. ::::.:...:..: ..
XP_016 YLKDTER----MYLCLSQERIIQFQATPCPKEPNKEMINDGASWTIISTDKAEYTFYEGM
280 290 300 310 320 330
380 390 400 410 420 430
pF1KB9 ACTLEPVTPVPLISTLELSGGGDVATLELHGENFHAGLKVWFGDVEAETMYRSPRSLVCV
. .: ::::::.. .:.:.:::::: ::: :.:: .:.::::::::::::: .:..::
XP_016 GPVLAPVTPVPVVESLQLNGGGDVAMLELTGQNFTPNLRVWFGDVEAETMYRCGESMLCV
340 350 360 370 380 390
440 450 460 470 480 490
pF1KB9 VPDVAAFCSDWRWLRAPITIPMSLVRADGLFYPSAFSFTYTPEYSVRPGHPGVPEPATDA
:::..:: :::.: :. .:..::: ::..: ....:::::: . ::
XP_016 VPDISAFREGWRWVRQPVQVPVTLVRNDGIIYSTSLTFTYTPEPGPRPHCSAAGAILRAN
400 410 420 430 440 450
500 510
pF1KB9 DALLESIHQEFTRTNFHLFIQT
XP_016 SSQVPPNESNTNSEGSYTNASTNSTSVTSSTATVVS
460 470 480
>>XP_016863663 (OMIM: 147183,614814) PREDICTED: recombin (486 aa)
initn: 1356 init1: 682 opt: 1381 Z-score: 1563.4 bits: 298.8 E(85289): 2.4e-80
Smith-Waterman score: 1648; 54.8% identity (78.1% similar) in 438 aa overlap (47-483:12-438)
20 30 40 50 60 70
pF1KB9 THLSLQDRSEMQLQSEADRRSLPGTWTRSSPEHTTILRGGVRRCLQQQCEQTVRILHAKV
: . : ..: :... .::: ::::::
XP_016 MAWIKRKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKV
10 20 30 40
80 90 100 110 120 130
pF1KB9 AQKSYGNEKRFFCPPPCVYLSGPGWRVKPGQDQAHQAGETGPTVCGYMGLDSASGSATET
:::::::::::::::::::: : ::. : : . .: :...:. . : :
XP_016 AQKSYGNEKRFFCPPPCVYLMGSGWKKKKEQMERDGCSEQESQPCAFIGIGN---SDQEM
50 60 70 80 90
140 150 160 170 180 190
pF1KB9 QKLNFEQQPDSREFGCAKTLYISDADKRKHFRLVLRLVLRGGRELGTFHSRLIKVISKPS
:.::.: .... ::::::::.:::::: : ... .. ..:.: :. ::::::::
XP_016 QQLNLE----GKNYCTAKTLYISDSDKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPS
100 110 120 130 140 150
200 210 220 230 240 250
pF1KB9 QKKQSLKNTDLCISSGSKVSLFNRLRSQTVSTRYLSVEDGAFVASARQWAAFTLHLADGH
.:::::::.::::.::.::.::::::::::::::: :: : : ::..::.:: .:: :
XP_016 KKKQSLKNADLCIASGTKVALFNRLRSQTVSTRYLHVEGGNFHASSQQWGAFFIHLLDDD
160 170 180 190 200 210
260 270 280 290 300 310
pF1KB9 SAQGD-FPPREGYVRYGSLVQLVCTVTGITLPPMIIRKVAKQCALLDVDEPISQLHKCAF
..:. : :.::..::. :.:::.:::..:: .::::: :: ::::.:.:.::::::::
XP_016 ESEGEEFTVRDGYIHYGQTVKLVCSVTGMALPRLIIRKVDKQTALLDADDPVSQLHKCAF
220 230 240 250 260 270
320 330 340 350 360 370
pF1KB9 QFPGSPPGGGGTYLCLATEKVVQFQASPCPKEANRALLNDSSCWTIIGTESVEFSFSTSL
. . ::::. :...::::.::::: :. ..::.. ::::.:...:..: ..
XP_016 YLKDTER----MYLCLSQERIIQFQATPCPKEPNKEMINDGASWTIISTDKAEYTFYEGM
280 290 300 310 320 330
380 390 400 410 420 430
pF1KB9 ACTLEPVTPVPLISTLELSGGGDVATLELHGENFHAGLKVWFGDVEAETMYRSPRSLVCV
. .: ::::::.. .:.:.:::::: ::: :.:: .:.::::::::::::: .:..::
XP_016 GPVLAPVTPVPVVESLQLNGGGDVAMLELTGQNFTPNLRVWFGDVEAETMYRCGESMLCV
340 350 360 370 380 390
440 450 460 470 480 490
pF1KB9 VPDVAAFCSDWRWLRAPITIPMSLVRADGLFYPSAFSFTYTPEYSVRPGHPGVPEPATDA
:::..:: :::.: :. .:..::: ::..: ....:::::: . ::
XP_016 VPDISAFREGWRWVRQPVQVPVTLVRNDGIIYSTSLTFTYTPEPGPRPHCSAAGAILRAN
400 410 420 430 440 450
500 510
pF1KB9 DALLESIHQEFTRTNFHLFIQT
XP_016 SSQVPPNESNTNSEGSYTNASTNSTSVTSSTATVVS
460 470 480
517 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 13:02:56 2016 done: Sun Nov 6 13:02:58 2016
Total Scan time: 10.680 Total Display time: 0.070
Function used was FASTA [36.3.4 Apr, 2011]