FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9721, 407 aa
  1>>>pF1KB9721 407 - 407 aa - 407 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.6614+/-0.000812; mu= 4.8813+/- 0.049
 mean_var=247.3536+/-52.762, 0's: 0 Z-trim(116.1): 150  B-trim: 1073 in 2/50
 Lambda= 0.081548
 statistics sampled from 16571 (16746) to 16571 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.804), E-opt: 0.2 (0.514), width:  16
 Scan time:  3.650

The best scores are:                                      opt bits E(32554)
CCDS5413.1 EVX1 gene_id:2128|Hs108|chr7            ( 407) 2791 340.8 1.4e-93
CCDS33333.1 EVX2 gene_id:344191|Hs108|chr2         ( 476) 1035 134.3 2.4e-31


>>CCDS5413.1 EVX1 gene_id:2128|Hs108|chr7                 (407 aa)
 initn: 2791 init1: 2791 opt: 2791  Z-score: 1793.6  bits: 340.8 E(32554): 1.4e-93
Smith-Waterman score: 2791; 100.0% identity (100.0% similar) in 407 aa overlap (1-407:1-407)

               10        20        30        40        50        60
pF1KB9 MESRKDMVVFLDGGQLGTLVGKRVSNLSEAVGSPLPEPPEKMVPRGCLSPRAVPPATRER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MESRKDMVVFLDGGQLGTLVGKRVSNLSEAVGSPLPEPPEKMVPRGCLSPRAVPPATRER
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 GGGGPEEEPVDGLAGSAAGPGAEPQVAGAAMLGPGPPAPSVDSLSGQGQPSSSDTESDFY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 GGGGPEEEPVDGLAGSAAGPGAEPQVAGAAMLGPGPPAPSVDSLSGQGQPSSSDTESDFY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 EEIEVSCTPDCATGNAEYQHSKGSGSEALVGSPNGGSETPKSNGGSGGGGSQGTLACSAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 EEIEVSCTPDCATGNAEYQHSKGSGSEALVGSPNGGSETPKSNGGSGGGGSQGTLACSAS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 DQMRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 DQMRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 QRLAMTWPHPADPAFYTYMMSHAAAAGGLPYPFPSHLPLPYYSPVGLGAASAASAAASPF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 QRLAMTWPHPADPAFYTYMMSHAAAAGGLPYPFPSHLPLPYYSPVGLGAASAASAAASPF
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 SGSLRPLDTFRVLSQPYPRPELLCAFRHPPLYPGPAHGLGASAGGPCSCLACHSGPANGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 SGSLRPLDTFRVLSQPYPRPELLCAFRHPPLYPGPAHGLGASAGGPCSCLACHSGPANGL
              310       320       330       340       350       360

              370       380       390       400       
pF1KB9 APRAAAASDFTCASTSRSDSFLTFAPSVLSKASSVALDQREEVPLTR
       :::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 APRAAAASDFTCASTSRSDSFLTFAPSVLSKASSVALDQREEVPLTR
              370       380       390       400       

>>CCDS33333.1 EVX2 gene_id:344191|Hs108|chr2              (476 aa)
 initn: 1135 init1: 738 opt: 1035  Z-score: 676.2  bits: 134.3 E(32554): 2.4e-31
Smith-Waterman score: 1094; 49.1% identity (67.9% similar) in 411 aa overlap (4-368:6-408)

                 10        20        30        40        50        
pF1KB9   MESRKDMVVFLDGGQLGTLVGKRVSNLSEAVGSPLPEPPEKMVPRGCLSPRAVPPATR
            ::.:.. .. :  .  .::: ::::...:. . :  :.    . :::: .: :  
CCDS33 MMERIRKEMIL-MERGLHSPTAGKRFSNLSNSAGNAVLEALENSQHPARLSPR-LPSAPL
               10         20        30        40        50         

       60        70        80        90       100       110        
pF1KB9 ERGGGGPEEEPVDGLAGSAAGPGAEPQVAGAAMLGPGPPAPSVDSLSGQGQPSSSDTESD
       . . :   : :. :          . : .:.     .  . ...: .  :. : . .:.:
CCDS33 HSALG---ELPAKG--KFEIDTLFNLQHTGSESTVSSEISSAAESRKKPGHYSEAAAEAD
       60             70        80        90       100       110   

      120           130       140            150       160         
pF1KB9 FYEEIEVSCT----PDCATGNAEYQHSKG-----SGSEALVGSPNGGSETPKSNGGSGGG
       .  ..::.:.    :  . : :. ....:     ::: : . .  .::   . .:::::.
CCDS33 MSSDVEVGCSALRSPG-GLGAAQLKENNGKGYAESGSAAGTTTSASGSGLGSLHGGSGGS
           120        130       140       150       160       170  

     170       180         190       200       210       220       
pF1KB9 GSQGTLACSAS--DQMRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTI
       :....:. :.:  ::.::::::::::::::::::::::::::::::::::::::::::::
CCDS33 GGSAALGGSGSGADQVRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTI
            180       190       200       210       220       230  

       230       240       250       260       270       280       
pF1KB9 KVWFQNRRMKDKRQRLAMTWPHPADPAFYTYMMSHAAAAGGLPYPFPSHLPLPYYSPVGL
       ::::::::::::::::::.:::::::.::::::.::::.:.::::: ::.:: ::  ::.
CCDS33 KVWFQNRRMKDKRQRLAMSWPHPADPSFYTYMMTHAAATGSLPYPFHSHVPLHYYPHVGV
            240       250       260       270       280       290  

       290              300       310       320       330       340
pF1KB9 GAASAASAAA-------SPFSGSLRPLDTFRVLSQPYPRPELLCAFRHPPLYPGPAHGLG
        ::.::.::.       :::. :.:::::::.::.:: ::::::.:::: :: .:: . :
CCDS33 TAAAAAAAASGAAAAASSPFATSIRPLDTFRALSHPYSRPELLCSFRHPGLYQAPAAAAG
            300       310       320       330       340       350  

                                          350       360       370  
pF1KB9 ----ASA----------------------GG--PCSCLACHSGPANGLAPRAAAASDFTC
           :::                      ::  :::::.:::. . . :  ::::.    
CCDS33 LNSAASAAAAAAAAAAAASSAAAAGAPPSGGSAPCSCLSCHSSQSAAAAAAAAAAALGSR
            360       370       380       390       400       410  

            380       390       400                                
pF1KB9 ASTSRSDSFLTFAPSVLSKASSVALDQREEVPLTR                         
                                                                   
CCDS33 GGGGGGGGGGGGGGGGAGAGGGSDFGCSAAAPRSESGFLPYSAAVLSKTAVSPPDQRDEA
            420       430       440       450       460       470  




407 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 16:25:50 2016 done: Sun Nov  6 16:25:51 2016
 Total Scan time:  3.650 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]