Result of FASTA (omim) for
pFN21AB9719
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9719, 402 aa
1>>>pF1KB9719 402 - 402 aa - 402 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.1282+/-0.000408; mu= 3.5004+/- 0.026
mean_var=373.5783+/-75.192, 0's: 0 Z-trim(123.3): 278 B-trim: 53 in 1/57
Lambda= 0.066356
statistics sampled from 42414 (42744) to 42414 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.806), E-opt: 0.2 (0.501), width: 16
Scan time: 9.870
The best scores are: opt bits E(85289)
NP_055379 (OMIM: 221750,600577) LIM/homeobox prote ( 402) 2794 281.0 3.5e-75
NP_835258 (OMIM: 221750,600577) LIM/homeobox prote ( 397) 2606 263.0 9e-70
XP_005263467 (OMIM: 221750,600577) PREDICTED: LIM/ ( 386) 2599 262.3 1.4e-69
XP_016870657 (OMIM: 221750,600577) PREDICTED: LIM/ ( 373) 2596 262.0 1.7e-69
NP_203129 (OMIM: 262700,602146) LIM/homeobox prote ( 390) 1718 178.0 3.5e-44
XP_011508407 (OMIM: 262700,602146) PREDICTED: LIM/ ( 329) 1481 155.2 2.1e-37
XP_011508408 (OMIM: 262700,602146) PREDICTED: LIM/ ( 329) 1481 155.2 2.1e-37
XP_016858244 (OMIM: 262700,602146) PREDICTED: LIM/ ( 315) 1366 144.2 4.3e-34
XP_011508410 (OMIM: 262700,602146) PREDICTED: LIM/ ( 315) 1366 144.2 4.3e-34
NP_071758 (OMIM: 605992) LIM/homeobox protein Lhx5 ( 402) 556 66.8 1.1e-10
NP_005559 (OMIM: 601999) LIM/homeobox protein Lhx1 ( 406) 535 64.8 4.4e-10
NP_001167540 (OMIM: 600298) LIM homeobox transcrip ( 382) 482 59.7 1.4e-08
NP_796372 (OMIM: 600298) LIM homeobox transcriptio ( 382) 482 59.7 1.4e-08
NP_001229263 (OMIM: 608215) LIM/homeobox protein L ( 363) 469 58.4 3.3e-08
NP_001229262 (OMIM: 608215) LIM/homeobox protein L ( 366) 469 58.4 3.3e-08
NP_954629 (OMIM: 608215) LIM/homeobox protein Lhx6 ( 377) 469 58.4 3.4e-08
XP_011516824 (OMIM: 608215) PREDICTED: LIM/homeobo ( 378) 469 58.4 3.4e-08
NP_055183 (OMIM: 608215) LIM/homeobox protein Lhx6 ( 392) 469 58.4 3.4e-08
XP_011516823 (OMIM: 608215) PREDICTED: LIM/homeobo ( 407) 469 58.5 3.5e-08
XP_011507842 (OMIM: 600298) PREDICTED: LIM homeobo ( 279) 461 57.5 4.8e-08
XP_006717386 (OMIM: 603759) PREDICTED: LIM/homeobo ( 314) 461 57.5 5.1e-08
NP_004780 (OMIM: 603759) LIM/homeobox protein Lhx2 ( 406) 461 57.7 6e-08
NP_665804 (OMIM: 609481) insulin gene enhancer pro ( 359) 458 57.3 6.8e-08
XP_005245407 (OMIM: 606066) PREDICTED: LIM/homeobo ( 336) 457 57.2 6.9e-08
XP_016857338 (OMIM: 606066) PREDICTED: LIM/homeobo ( 378) 457 57.3 7.5e-08
NP_001014434 (OMIM: 606066) LIM/homeobox protein L ( 388) 457 57.3 7.6e-08
NP_064589 (OMIM: 606066) LIM/homeobox protein Lhx9 ( 397) 457 57.3 7.7e-08
XP_011508083 (OMIM: 606066) PREDICTED: LIM/homeobo ( 403) 457 57.3 7.7e-08
XP_016877994 (OMIM: 609481) PREDICTED: insulin gen ( 534) 458 57.6 8.6e-08
NP_001167617 (OMIM: 161200,602575) LIM homeobox tr ( 406) 454 57.0 9.5e-08
NP_001243043 (OMIM: 604425) LIM/homeobox protein L ( 346) 446 56.2 1.5e-07
NP_001001933 (OMIM: 604425) LIM/homeobox protein L ( 356) 446 56.2 1.5e-07
XP_016856805 (OMIM: 604425) PREDICTED: LIM/homeobo ( 363) 446 56.2 1.5e-07
XP_016856806 (OMIM: 604425) PREDICTED: LIM/homeobo ( 363) 446 56.2 1.5e-07
NP_002193 (OMIM: 600366) insulin gene enhancer pro ( 349) 431 54.7 4e-07
NP_002307 (OMIM: 161200,602575) LIM homeobox trans ( 395) 429 54.6 4.9e-07
NP_001167618 (OMIM: 161200,602575) LIM homeobox tr ( 402) 429 54.6 5e-07
XP_005251973 (OMIM: 608215) PREDICTED: LIM/homeobo ( 230) 421 53.5 6e-07
NP_001230539 (OMIM: 180386) LIM domain only protei ( 145) 412 52.4 8.3e-07
XP_011519065 (OMIM: 180386) PREDICTED: LIM domain ( 145) 412 52.4 8.3e-07
XP_006719174 (OMIM: 180386) PREDICTED: LIM domain ( 145) 412 52.4 8.3e-07
NP_061110 (OMIM: 180386) LIM domain only protein 3 ( 145) 412 52.4 8.3e-07
XP_011519064 (OMIM: 180386) PREDICTED: LIM domain ( 145) 412 52.4 8.3e-07
NP_001230538 (OMIM: 180386) LIM domain only protei ( 145) 412 52.4 8.3e-07
XP_006719173 (OMIM: 180386) PREDICTED: LIM domain ( 145) 412 52.4 8.3e-07
NP_001001395 (OMIM: 180386) LIM domain only protei ( 145) 412 52.4 8.3e-07
NP_001230540 (OMIM: 180386) LIM domain only protei ( 156) 412 52.5 8.6e-07
NP_001230541 (OMIM: 180386) LIM domain only protei ( 163) 412 52.5 8.9e-07
XP_011518400 (OMIM: 186921) PREDICTED: rhombotin-1 ( 145) 406 51.8 1.2e-06
XP_011518401 (OMIM: 186921) PREDICTED: rhombotin-1 ( 145) 406 51.8 1.2e-06
>>NP_055379 (OMIM: 221750,600577) LIM/homeobox protein L (402 aa)
initn: 2794 init1: 2794 opt: 2794 Z-score: 1470.8 bits: 281.0 E(85289): 3.5e-75
Smith-Waterman score: 2794; 100.0% identity (100.0% similar) in 402 aa overlap (1-402:1-402)
10 20 30 40 50 60
pF1KB9 MEARGELGPARESAGGDLLLALLARRADLRREIPLCAGCDQHILDRFILKALDRHWHSKC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 MEARGELGPARESAGGDLLLALLARRADLRREIPLCAGCDQHILDRFILKALDRHWHSKC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 LKCSDCHTPLAERCFSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 LKCSDCHTPLAERCFSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 FACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAEATAKRPRTTITAKQLETLKSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 FACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAEATAKRPRTTITAKQLETLKSA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 YNTSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQRWGQYFRNMKRSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 YNTSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQRWGQYFRNMKRSR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 GGSKSDKDSVQEGQDSDAEVSFPDEPSLAEMGPANGLYGSLGEPTQALGRPSGALGNFSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 GGSKSDKDSVQEGQDSDAEVSFPDEPSLAEMGPANGLYGSLGEPTQALGRPSGALGNFSL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 EHGGLAGPEQYRELRPGSPYGVPPSPAAPQSLPGPQPLLSSLVYPDTSLGLVPSGAPGGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 EHGGLAGPEQYRELRPGSPYGVPPSPAAPQSLPGPQPLLSSLVYPDTSLGLVPSGAPGGP
310 320 330 340 350 360
370 380 390 400
pF1KB9 PPMRVLAGNGPSSDLSTGSSGGYPDFPASPASWLDEVDHAQF
::::::::::::::::::::::::::::::::::::::::::
NP_055 PPMRVLAGNGPSSDLSTGSSGGYPDFPASPASWLDEVDHAQF
370 380 390 400
>>NP_835258 (OMIM: 221750,600577) LIM/homeobox protein L (397 aa)
initn: 2606 init1: 2606 opt: 2606 Z-score: 1373.6 bits: 263.0 E(85289): 9e-70
Smith-Waterman score: 2606; 100.0% identity (100.0% similar) in 372 aa overlap (31-402:26-397)
10 20 30 40 50 60
pF1KB9 MEARGELGPARESAGGDLLLALLARRADLRREIPLCAGCDQHILDRFILKALDRHWHSKC
::::::::::::::::::::::::::::::
NP_835 MLLETGLERDRARPGAAAVCTLGGTREIPLCAGCDQHILDRFILKALDRHWHSKC
10 20 30 40 50
70 80 90 100 110 120
pF1KB9 LKCSDCHTPLAERCFSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_835 LKCSDCHTPLAERCFSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHC
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB9 FACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAEATAKRPRTTITAKQLETLKSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_835 FACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAEATAKRPRTTITAKQLETLKSA
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB9 YNTSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQRWGQYFRNMKRSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_835 YNTSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQRWGQYFRNMKRSR
180 190 200 210 220 230
250 260 270 280 290 300
pF1KB9 GGSKSDKDSVQEGQDSDAEVSFPDEPSLAEMGPANGLYGSLGEPTQALGRPSGALGNFSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_835 GGSKSDKDSVQEGQDSDAEVSFPDEPSLAEMGPANGLYGSLGEPTQALGRPSGALGNFSL
240 250 260 270 280 290
310 320 330 340 350 360
pF1KB9 EHGGLAGPEQYRELRPGSPYGVPPSPAAPQSLPGPQPLLSSLVYPDTSLGLVPSGAPGGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_835 EHGGLAGPEQYRELRPGSPYGVPPSPAAPQSLPGPQPLLSSLVYPDTSLGLVPSGAPGGP
300 310 320 330 340 350
370 380 390 400
pF1KB9 PPMRVLAGNGPSSDLSTGSSGGYPDFPASPASWLDEVDHAQF
::::::::::::::::::::::::::::::::::::::::::
NP_835 PPMRVLAGNGPSSDLSTGSSGGYPDFPASPASWLDEVDHAQF
360 370 380 390
>>XP_005263467 (OMIM: 221750,600577) PREDICTED: LIM/home (386 aa)
initn: 2599 init1: 2599 opt: 2599 Z-score: 1370.1 bits: 262.3 E(85289): 1.4e-69
Smith-Waterman score: 2599; 100.0% identity (100.0% similar) in 371 aa overlap (32-402:16-386)
10 20 30 40 50 60
pF1KB9 EARGELGPARESAGGDLLLALLARRADLRREIPLCAGCDQHILDRFILKALDRHWHSKCL
::::::::::::::::::::::::::::::
XP_005 MTLNMKETRWGAPAPEIPLCAGCDQHILDRFILKALDRHWHSKCL
10 20 30 40
70 80 90 100 110 120
pF1KB9 KCSDCHTPLAERCFSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KCSDCHTPLAERCFSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCF
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB9 ACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAEATAKRPRTTITAKQLETLKSAY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAEATAKRPRTTITAKQLETLKSAY
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB9 NTSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQRWGQYFRNMKRSRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NTSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQRWGQYFRNMKRSRG
170 180 190 200 210 220
250 260 270 280 290 300
pF1KB9 GSKSDKDSVQEGQDSDAEVSFPDEPSLAEMGPANGLYGSLGEPTQALGRPSGALGNFSLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GSKSDKDSVQEGQDSDAEVSFPDEPSLAEMGPANGLYGSLGEPTQALGRPSGALGNFSLE
230 240 250 260 270 280
310 320 330 340 350 360
pF1KB9 HGGLAGPEQYRELRPGSPYGVPPSPAAPQSLPGPQPLLSSLVYPDTSLGLVPSGAPGGPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 HGGLAGPEQYRELRPGSPYGVPPSPAAPQSLPGPQPLLSSLVYPDTSLGLVPSGAPGGPP
290 300 310 320 330 340
370 380 390 400
pF1KB9 PMRVLAGNGPSSDLSTGSSGGYPDFPASPASWLDEVDHAQF
:::::::::::::::::::::::::::::::::::::::::
XP_005 PMRVLAGNGPSSDLSTGSSGGYPDFPASPASWLDEVDHAQF
350 360 370 380
>>XP_016870657 (OMIM: 221750,600577) PREDICTED: LIM/home (373 aa)
initn: 2596 init1: 2596 opt: 2596 Z-score: 1368.7 bits: 262.0 E(85289): 1.7e-69
Smith-Waterman score: 2596; 99.5% identity (100.0% similar) in 372 aa overlap (31-402:2-373)
10 20 30 40 50 60
pF1KB9 MEARGELGPARESAGGDLLLALLARRADLRREIPLCAGCDQHILDRFILKALDRHWHSKC
..::::::::::::::::::::::::::::
XP_016 MQQIPLCAGCDQHILDRFILKALDRHWHSKC
10 20 30
70 80 90 100 110 120
pF1KB9 LKCSDCHTPLAERCFSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LKCSDCHTPLAERCFSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHC
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB9 FACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAEATAKRPRTTITAKQLETLKSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAEATAKRPRTTITAKQLETLKSA
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB9 YNTSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQRWGQYFRNMKRSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YNTSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQRWGQYFRNMKRSR
160 170 180 190 200 210
250 260 270 280 290 300
pF1KB9 GGSKSDKDSVQEGQDSDAEVSFPDEPSLAEMGPANGLYGSLGEPTQALGRPSGALGNFSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GGSKSDKDSVQEGQDSDAEVSFPDEPSLAEMGPANGLYGSLGEPTQALGRPSGALGNFSL
220 230 240 250 260 270
310 320 330 340 350 360
pF1KB9 EHGGLAGPEQYRELRPGSPYGVPPSPAAPQSLPGPQPLLSSLVYPDTSLGLVPSGAPGGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EHGGLAGPEQYRELRPGSPYGVPPSPAAPQSLPGPQPLLSSLVYPDTSLGLVPSGAPGGP
280 290 300 310 320 330
370 380 390 400
pF1KB9 PPMRVLAGNGPSSDLSTGSSGGYPDFPASPASWLDEVDHAQF
::::::::::::::::::::::::::::::::::::::::::
XP_016 PPMRVLAGNGPSSDLSTGSSGGYPDFPASPASWLDEVDHAQF
340 350 360 370
>>NP_203129 (OMIM: 262700,602146) LIM/homeobox protein L (390 aa)
initn: 1166 init1: 790 opt: 1718 Z-score: 914.3 bits: 178.0 E(85289): 3.5e-44
Smith-Waterman score: 1718; 66.3% identity (85.4% similar) in 377 aa overlap (31-402:25-390)
10 20 30 40 50 60
pF1KB9 MEARGELGPARESAGGDLLLALLARRADLRREIPLCAGCDQHILDRFILKALDRHWHSKC
..:: ::::.:::::.::::.:::::::.:
NP_203 MMQSATVPAEGAVKGLPEMLGVPMQQIPQCAGCNQHILDKFILKVLDRHWHSSC
10 20 30 40 50
70 80 90 100 110 120
pF1KB9 LKCSDCHTPLAERCFSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHC
:::.::. ::.:::::. :::::.::::::::::.::: :::::::::.::::::::::
NP_203 LKCADCQMQLADRCFSRAGSVYCKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHC
60 70 80 90 100 110
130 140 150 160 170
pF1KB9 FACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQRE-AEATAKRPRTTITAKQLETLKS
:::..:.::::::::::::::.::::: ::::::: . .:: :::::::::::::::::.
NP_203 FACIICNRQLATGDEFYLMEDGRLVCKEDYETAKQNDDSEAGAKRPRTTITAKQLETLKN
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB9 AYNTSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQRWGQYFRNMKRS
::..:::::::::::::::::::::::::::::::::::::::::::.::::.....:::
NP_203 AYKNSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRHRWGQFYKSVKRS
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB9 RGGSKSDKDSVQEGQD-SDAEVSFPDEPSLAEMGPANGLYGSLGEPTQALGRPSGAL--G
::.::..:.: : ::.:.:: .. :.:.: .: .::..:. : .: : :
NP_203 RGSSKQEKESSAEDCGVSDSELSFREDQILSELGHTNRIYGNVGDVT------GGQLMNG
240 250 260 270 280
300 310 320 330 340 350
pF1KB9 NFSLEHGGLAGPEQYRELRPGSPYGVPPSPAAPQSLPGPQPLLSSLVYP-DTSLGLVPSG
.::.. : ..:..:: :::::.: ::.. .:::. :::..: : :..::.. .
NP_203 SFSMDGTG----QSYQDLRDGSPYGIPQSPSSISSLPSHAPLLNGLDYTVDSNLGIIAHA
290 300 310 320 330 340
360 370 380 390 400
pF1KB9 APGGPPPMRVLAGNGPSSDLSTGSSGGYPDFPASPASWLDEVDHAQF
. : .:..:: ::.::.::::: ::::::.::.:::::.:: :
NP_203 GQGVSQTLRAMAG-GPTSDISTGSSVGYPDFPTSPGSWLDEMDHPPF
350 360 370 380 390
>>XP_011508407 (OMIM: 262700,602146) PREDICTED: LIM/home (329 aa)
initn: 929 init1: 553 opt: 1481 Z-score: 792.4 bits: 155.2 E(85289): 2.1e-37
Smith-Waterman score: 1481; 65.7% identity (84.6% similar) in 338 aa overlap (70-402:3-329)
40 50 60 70 80 90
pF1KB9 DQHILDRFILKALDRHWHSKCLKCSDCHTPLAERCFSRGESVYCKDDFFKRFGTKCAACQ
::.:::::. :::::.::::::::::.:::
XP_011 MQLADRCFSRAGSVYCKEDFFKRFGTKCTACQ
10 20 30
100 110 120 130 140 150
pF1KB9 LGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQRE-A
:::::::::.:::::::::::::..:.::::::::::::::.::::: ::::::: . .
XP_011 QGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDYETAKQNDDS
40 50 60 70 80 90
160 170 180 190 200 210
pF1KB9 EATAKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEK
:: :::::::::::::::::.::..:::::::::::::::::::::::::::::::::::
XP_011 EAGAKRPRTTITAKQLETLKNAYKNSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEK
100 110 120 130 140 150
220 230 240 250 260 270
pF1KB9 RLKKDAGRQRWGQYFRNMKRSRGGSKSDKDSVQEGQD-SDAEVSFPDEPSLAEMGPANGL
::::::::.::::.....:::::.::..:.: : ::.:.:: .. :.:.: .: .
XP_011 RLKKDAGRHRWGQFYKSVKRSRGSSKQEKESSAEDCGVSDSELSFREDQILSELGHTNRI
160 170 180 190 200 210
280 290 300 310 320 330
pF1KB9 YGSLGEPTQALGRPSGAL--GNFSLEHGGLAGPEQYRELRPGSPYGVPPSPAAPQSLPGP
::..:. : .: : :.::.. : ..:..:: :::::.: ::.. .:::.
XP_011 YGNVGDVT------GGQLMNGSFSMDGTG----QSYQDLRDGSPYGIPQSPSSISSLPSH
220 230 240 250 260
340 350 360 370 380 390
pF1KB9 QPLLSSLVYP-DTSLGLVPSGAPGGPPPMRVLAGNGPSSDLSTGSSGGYPDFPASPASWL
:::..: : :..::.. .. : .:..:: ::.::.::::: ::::::.::.:::
XP_011 APLLNGLDYTVDSNLGIIAHAGQGVSQTLRAMAG-GPTSDISTGSSVGYPDFPTSPGSWL
270 280 290 300 310 320
400
pF1KB9 DEVDHAQF
::.:: :
XP_011 DEMDHPPF
>>XP_011508408 (OMIM: 262700,602146) PREDICTED: LIM/home (329 aa)
initn: 929 init1: 553 opt: 1481 Z-score: 792.4 bits: 155.2 E(85289): 2.1e-37
Smith-Waterman score: 1481; 65.7% identity (84.6% similar) in 338 aa overlap (70-402:3-329)
40 50 60 70 80 90
pF1KB9 DQHILDRFILKALDRHWHSKCLKCSDCHTPLAERCFSRGESVYCKDDFFKRFGTKCAACQ
::.:::::. :::::.::::::::::.:::
XP_011 MQLADRCFSRAGSVYCKEDFFKRFGTKCTACQ
10 20 30
100 110 120 130 140 150
pF1KB9 LGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQRE-A
:::::::::.:::::::::::::..:.::::::::::::::.::::: ::::::: . .
XP_011 QGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDYETAKQNDDS
40 50 60 70 80 90
160 170 180 190 200 210
pF1KB9 EATAKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEK
:: :::::::::::::::::.::..:::::::::::::::::::::::::::::::::::
XP_011 EAGAKRPRTTITAKQLETLKNAYKNSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEK
100 110 120 130 140 150
220 230 240 250 260 270
pF1KB9 RLKKDAGRQRWGQYFRNMKRSRGGSKSDKDSVQEGQD-SDAEVSFPDEPSLAEMGPANGL
::::::::.::::.....:::::.::..:.: : ::.:.:: .. :.:.: .: .
XP_011 RLKKDAGRHRWGQFYKSVKRSRGSSKQEKESSAEDCGVSDSELSFREDQILSELGHTNRI
160 170 180 190 200 210
280 290 300 310 320 330
pF1KB9 YGSLGEPTQALGRPSGAL--GNFSLEHGGLAGPEQYRELRPGSPYGVPPSPAAPQSLPGP
::..:. : .: : :.::.. : ..:..:: :::::.: ::.. .:::.
XP_011 YGNVGDVT------GGQLMNGSFSMDGTG----QSYQDLRDGSPYGIPQSPSSISSLPSH
220 230 240 250 260
340 350 360 370 380 390
pF1KB9 QPLLSSLVYP-DTSLGLVPSGAPGGPPPMRVLAGNGPSSDLSTGSSGGYPDFPASPASWL
:::..: : :..::.. .. : .:..:: ::.::.::::: ::::::.::.:::
XP_011 APLLNGLDYTVDSNLGIIAHAGQGVSQTLRAMAG-GPTSDISTGSSVGYPDFPTSPGSWL
270 280 290 300 310 320
400
pF1KB9 DEVDHAQF
::.:: :
XP_011 DEMDHPPF
>>XP_016858244 (OMIM: 262700,602146) PREDICTED: LIM/home (315 aa)
initn: 902 init1: 526 opt: 1366 Z-score: 733.1 bits: 144.2 E(85289): 4.3e-34
Smith-Waterman score: 1366; 64.6% identity (84.0% similar) in 319 aa overlap (89-402:8-315)
60 70 80 90 100 110
pF1KB9 KCLKCSDCHTPLAERCFSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHL
.::::::.::: :::::::::.::::::::
XP_016 MEAERTRRRFGTKCTACQQGIPPTQVVRKAQDFVYHL
10 20 30
120 130 140 150 160 170
pF1KB9 HCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQRE-AEATAKRPRTTITAKQLETL
:::::..:.::::::::::::::.::::: ::::::: . .:: ::::::::::::::::
XP_016 HCFACIICNRQLATGDEFYLMEDGRLVCKEDYETAKQNDDSEAGAKRPRTTITAKQLETL
40 50 60 70 80 90
180 190 200 210 220 230
pF1KB9 KSAYNTSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQRWGQYFRNMK
:.::..:::::::::::::::::::::::::::::::::::::::::::.::::.....:
XP_016 KNAYKNSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRHRWGQFYKSVK
100 110 120 130 140 150
240 250 260 270 280 290
pF1KB9 RSRGGSKSDKDSVQEGQD-SDAEVSFPDEPSLAEMGPANGLYGSLGEPTQALGRPSGAL-
::::.::..:.: : ::.:.:: .. :.:.: .: .::..:. : .: :
XP_016 RSRGSSKQEKESSAEDCGVSDSELSFREDQILSELGHTNRIYGNVGDVT------GGQLM
160 170 180 190 200 210
300 310 320 330 340 350
pF1KB9 -GNFSLEHGGLAGPEQYRELRPGSPYGVPPSPAAPQSLPGPQPLLSSLVYP-DTSLGLVP
:.::.. : ..:..:: :::::.: ::.. .:::. :::..: : :..::..
XP_016 NGSFSMDGTG----QSYQDLRDGSPYGIPQSPSSISSLPSHAPLLNGLDYTVDSNLGIIA
220 230 240 250 260
360 370 380 390 400
pF1KB9 SGAPGGPPPMRVLAGNGPSSDLSTGSSGGYPDFPASPASWLDEVDHAQF
.. : .:..:: ::.::.::::: ::::::.::.:::::.:: :
XP_016 HAGQGVSQTLRAMAG-GPTSDISTGSSVGYPDFPTSPGSWLDEMDHPPF
270 280 290 300 310
>>XP_011508410 (OMIM: 262700,602146) PREDICTED: LIM/home (315 aa)
initn: 902 init1: 526 opt: 1366 Z-score: 733.1 bits: 144.2 E(85289): 4.3e-34
Smith-Waterman score: 1366; 64.6% identity (84.0% similar) in 319 aa overlap (89-402:8-315)
60 70 80 90 100 110
pF1KB9 KCLKCSDCHTPLAERCFSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHL
.::::::.::: :::::::::.::::::::
XP_011 MEAERTRRRFGTKCTACQQGIPPTQVVRKAQDFVYHL
10 20 30
120 130 140 150 160 170
pF1KB9 HCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQRE-AEATAKRPRTTITAKQLETL
:::::..:.::::::::::::::.::::: ::::::: . .:: ::::::::::::::::
XP_011 HCFACIICNRQLATGDEFYLMEDGRLVCKEDYETAKQNDDSEAGAKRPRTTITAKQLETL
40 50 60 70 80 90
180 190 200 210 220 230
pF1KB9 KSAYNTSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQRWGQYFRNMK
:.::..:::::::::::::::::::::::::::::::::::::::::::.::::.....:
XP_011 KNAYKNSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRHRWGQFYKSVK
100 110 120 130 140 150
240 250 260 270 280 290
pF1KB9 RSRGGSKSDKDSVQEGQD-SDAEVSFPDEPSLAEMGPANGLYGSLGEPTQALGRPSGAL-
::::.::..:.: : ::.:.:: .. :.:.: .: .::..:. : .: :
XP_011 RSRGSSKQEKESSAEDCGVSDSELSFREDQILSELGHTNRIYGNVGDVT------GGQLM
160 170 180 190 200 210
300 310 320 330 340 350
pF1KB9 -GNFSLEHGGLAGPEQYRELRPGSPYGVPPSPAAPQSLPGPQPLLSSLVYP-DTSLGLVP
:.::.. : ..:..:: :::::.: ::.. .:::. :::..: : :..::..
XP_011 NGSFSMDGTG----QSYQDLRDGSPYGIPQSPSSISSLPSHAPLLNGLDYTVDSNLGIIA
220 230 240 250 260
360 370 380 390 400
pF1KB9 SGAPGGPPPMRVLAGNGPSSDLSTGSSGGYPDFPASPASWLDEVDHAQF
.. : .:..:: ::.::.::::: ::::::.::.:::::.:: :
XP_011 HAGQGVSQTLRAMAG-GPTSDISTGSSVGYPDFPTSPGSWLDEMDHPPF
270 280 290 300 310
>>NP_071758 (OMIM: 605992) LIM/homeobox protein Lhx5 [Ho (402 aa)
initn: 934 init1: 549 opt: 556 Z-score: 312.9 bits: 66.8 E(85289): 1.1e-10
Smith-Waterman score: 862; 38.7% identity (61.3% similar) in 419 aa overlap (36-396:5-398)
10 20 30 40 50 60
pF1KB9 ELGPARESAGGDLLLALLARRADLRREIPLCAGCDQHILDRFILKALDRHWHSKCLKCSD
::::.. :::::.:..::: :: ::..: .
NP_071 MMVHCAGCERPILDRFLLNVLDRAWHIKCVQCCE
10 20 30
70 80 90 100 110 120
pF1KB9 CHTPLAERCFSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVV
:.: :.:.:::: ..:::.:::.:::::::.: :: :...::.:.. :.::.::.:.:
NP_071 CKTNLSEKCFSREGKLYCKNDFFRRFGTKCAGCAQGISPSDLVRKARSKVFHLNCFTCMV
40 50 60 70 80 90
130 140 150
pF1KB9 CKRQLATGDEFYLMEDSRLVCKADY-----------------------------------
:..::.::.:.:.......::: ::
NP_071 CNKQLSTGEELYVIDENKFVCKDDYLSSSSLKEGSLNSVSSCTDRSLSPDLQDALQDDPK
100 110 120 130 140 150
160 170 180 190
pF1KB9 ----------ETAKQREAE---ATAKR-PRTTITAKQLETLKSAYNTSPKPARHVREQLS
:::.... : .: .: ::::: ::::::::.:. ..:::.::.::::.
NP_071 ETDNSTSSDKETANNENEEQNSGTKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLA
160 170 180 190 200 210
200 210 220 230 240 250
pF1KB9 SETGLDMRVVQVWFQNRRAKEKRLKK-DAGRQRWGQYFRNMKRSRG-GSKSDKDSVQEGQ
.::::.:::.::::::::.::.:.:. .: : .::. .: : :.. :.. :
NP_071 QETGLNMRVIQVWFQNRRSKERRMKQLSALGARRHAFFRSPRRMRPLGGRLDES---EML
220 230 240 250 260 270
260 270 280 290 300 310
pF1KB9 DSDAEVSFPDEPSLAEMGPANGLYGSLGEPTQALGRPSGALGNFSLEHGGLAGPEQYREL
: . . : . .: . . : :.:: : : ..: :
NP_071 GSTPYTYYGDYQGDYYAPGSNYDFFAHGPPSQA---QSPADSSFLAASG-----------
280 290 300 310
320 330 340 350 360
pF1KB9 RPGS-PYG-VPPSPAAPQSLPGPQPLLSSLVYPDTSLGLVPSGAPGGP----P-PMRVLA
::: : : . : :.:.. .:. . . . .::: :: :: : : : .:..
NP_071 -PGSTPLGALEPPLAGPHAADNPR-FTDMISHPDT-----PSPEPGLPGTLHPMPGEVFS
320 330 340 350 360 370
370 380 390 400
pF1KB9 GNGPSSDLSTGSSGGYPDFPASPASWLDEVDHAQF
: ::: . ....:: . : :.:
NP_071 G-GPSPPFPMSGTSGYSGPLSHPNPELNEAAVW
380 390 400
402 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 15:38:34 2016 done: Sun Nov 6 15:38:36 2016
Total Scan time: 9.870 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]