FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9708, 341 aa
  1>>>pF1KB9708 341 - 341 aa - 341 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 13.1424+/-0.000394; mu= -17.5667+/- 0.025
 mean_var=516.0749+/-107.176, 0's: 0 Z-trim(126.9): 27  B-trim: 1051 in 2/58
 Lambda= 0.056457
 statistics sampled from 54097 (54146) to 54097 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.856), E-opt: 0.2 (0.635), width:  16
 Scan time:  8.340

The best scores are:                                      opt bits E(85289)
NP_003568 (OMIM: 604130) undifferentiated embryoni ( 341) 2414 210.1 5.5e-54


>>NP_003568 (OMIM: 604130) undifferentiated embryonic ce  (341 aa)
 initn: 2414 init1: 2414 opt: 2414  Z-score: 1090.2  bits: 210.1 E(85289): 5.5e-54
Smith-Waterman score: 2414; 100.0% identity (100.0% similar) in 341 aa overlap (1-341:1-341)

               10        20        30        40        50        60
pF1KB9 MLLRPRRPPPLAPPAPPSPASPDPEPRTPGDAPGTPPRRPASPSALGELGLPVSPGSAQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MLLRPRRPPPLAPPAPPSPASPDPEPRTPGDAPGTPPRRPASPSALGELGLPVSPGSAQR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 TPWSARETELLLGTLLQPAVWRALLLDRRQALPTYRRVSAALAQQQVRRTPAQCRRRYKF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 TPWSARETELLLGTLLQPAVWRALLLDRRQALPTYRRVSAALAQQQVRRTPAQCRRRYKF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 LKDKFREAHGQPPGPFDEQIRKLMGLLGDNGRKRPRRRSPGSGRPQRARRPVPNAHAPAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 LKDKFREAHGQPPGPFDEQIRKLMGLLGDNGRKRPRRRSPGSGRPQRARRPVPNAHAPAP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 SEPDATPLPTARDRDADPTWTLRFSPSPPKSADASPAPGSPPAPAPTALATCIPEDRAPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 SEPDATPLPTARDRDADPTWTLRFSPSPPKSADASPAPGSPPAPAPTALATCIPEDRAPV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 RGPGSPPPPPAREDPDSPPGRPEDCAPPPAAPPSLNTALLQTLGHLGDIANILGPLRDQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 RGPGSPPPPPAREDPDSPPGRPEDCAPPPAAPPSLNTALLQTLGHLGDIANILGPLRDQL
              250       260       270       280       290       300

              310       320       330       340 
pF1KB9 LTLNQHVEQLRGAFDQTVSLAVGFILGSAAAERGVLRDPCQ
       :::::::::::::::::::::::::::::::::::::::::
NP_003 LTLNQHVEQLRGAFDQTVSLAVGFILGSAAAERGVLRDPCQ
              310       320       330       340 




341 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 04:27:08 2016 done: Tue Nov  8 04:27:09 2016
 Total Scan time:  8.340 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]