FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9708, 341 aa
  1>>>pF1KB9708 341 - 341 aa - 341 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 12.0530+/-0.000949; mu= -10.6072+/- 0.058
 mean_var=477.6041+/-97.632, 0's: 0 Z-trim(119.1): 9  B-trim: 215 in 1/54
 Lambda= 0.058687
 statistics sampled from 20164 (20172) to 20164 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.846), E-opt: 0.2 (0.62), width:  16
 Scan time:  3.300

The best scores are:                                      opt bits E(32554)
CCDS31318.1 UTF1 gene_id:8433|Hs108|chr10          ( 341) 2414 217.7 1.1e-56


>>CCDS31318.1 UTF1 gene_id:8433|Hs108|chr10               (341 aa)
 initn: 2414 init1: 2414 opt: 2414  Z-score: 1131.0  bits: 217.7 E(32554): 1.1e-56
Smith-Waterman score: 2414; 100.0% identity (100.0% similar) in 341 aa overlap (1-341:1-341)

               10        20        30        40        50        60
pF1KB9 MLLRPRRPPPLAPPAPPSPASPDPEPRTPGDAPGTPPRRPASPSALGELGLPVSPGSAQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MLLRPRRPPPLAPPAPPSPASPDPEPRTPGDAPGTPPRRPASPSALGELGLPVSPGSAQR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 TPWSARETELLLGTLLQPAVWRALLLDRRQALPTYRRVSAALAQQQVRRTPAQCRRRYKF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 TPWSARETELLLGTLLQPAVWRALLLDRRQALPTYRRVSAALAQQQVRRTPAQCRRRYKF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 LKDKFREAHGQPPGPFDEQIRKLMGLLGDNGRKRPRRRSPGSGRPQRARRPVPNAHAPAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LKDKFREAHGQPPGPFDEQIRKLMGLLGDNGRKRPRRRSPGSGRPQRARRPVPNAHAPAP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 SEPDATPLPTARDRDADPTWTLRFSPSPPKSADASPAPGSPPAPAPTALATCIPEDRAPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 SEPDATPLPTARDRDADPTWTLRFSPSPPKSADASPAPGSPPAPAPTALATCIPEDRAPV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 RGPGSPPPPPAREDPDSPPGRPEDCAPPPAAPPSLNTALLQTLGHLGDIANILGPLRDQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 RGPGSPPPPPAREDPDSPPGRPEDCAPPPAAPPSLNTALLQTLGHLGDIANILGPLRDQL
              250       260       270       280       290       300

              310       320       330       340 
pF1KB9 LTLNQHVEQLRGAFDQTVSLAVGFILGSAAAERGVLRDPCQ
       :::::::::::::::::::::::::::::::::::::::::
CCDS31 LTLNQHVEQLRGAFDQTVSLAVGFILGSAAAERGVLRDPCQ
              310       320       330       340 




341 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 04:27:07 2016 done: Tue Nov  8 04:27:08 2016
 Total Scan time:  3.300 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]