FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9693, 252 aa
  1>>>pF1KB9693 252 - 252 aa - 252 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 11.7563+/-0.000945; mu= -9.7550+/- 0.057
 mean_var=530.9813+/-117.846, 0's: 0 Z-trim(119.6): 532  B-trim: 1053 in 1/54
 Lambda= 0.055659
 statistics sampled from 20211 (20919) to 20211 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.859), E-opt: 0.2 (0.643), width:  16
 Scan time:  3.110

The best scores are:                                      opt bits E(32554)
CCDS12075.1 KLF16 gene_id:83855|Hs108|chr19        ( 252) 1774 155.4 3.3e-38
CCDS5825.1 KLF14 gene_id:136259|Hs108|chr7         ( 323)  719 70.8 1.2e-12
CCDS10025.1 KLF13 gene_id:51621|Hs108|chr15        ( 288)  671 66.9 1.7e-11


>>CCDS12075.1 KLF16 gene_id:83855|Hs108|chr19             (252 aa)
 initn: 1774 init1: 1774 opt: 1774  Z-score: 799.3  bits: 155.4 E(32554): 3.3e-38
Smith-Waterman score: 1774; 100.0% identity (100.0% similar) in 252 aa overlap (1-252:1-252)

               10        20        30        40        50        60
pF1KB9 MSAAVACVDYFAADVLMAISSGAVVHRGRPGPEGAGPAAGLDVRAARREAASPGTPGPPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MSAAVACVDYFAADVLMAISSGAVVHRGRPGPEGAGPAAGLDVRAARREAASPGTPGPPP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 PPPAASGPGPGAAAAPHLLAASILADLRGGPGAAPGGASPASSSSAASSPSSGRAPGAAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 PPPAASGPGPGAAAAPHLLAASILADLRGGPGAAPGGASPASSSSAASSPSSGRAPGAAP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 SAAAKSHRCPFPDCAKAYYKSSHLKSHLRTHTGERPFACDWQGCDKKFARSDELARHHRT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 SAAAKSHRCPFPDCAKAYYKSSHLKSHLRTHTGERPFACDWQGCDKKFARSDELARHHRT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 HTGEKRFSCPLCSKRFTRSDHLAKHARRHPGFHPDLLRRPGARSTSPSDSLPCSLAGSPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 HTGEKRFSCPLCSKRFTRSDHLAKHARRHPGFHPDLLRRPGARSTSPSDSLPCSLAGSPA
              190       200       210       220       230       240

              250  
pF1KB9 PSPAPSPAPAGL
       ::::::::::::
CCDS12 PSPAPSPAPAGL
              250  

>>CCDS5825.1 KLF14 gene_id:136259|Hs108|chr7              (323 aa)
 initn: 1049 init1: 661 opt: 719  Z-score: 340.2  bits: 70.8 E(32554): 1.2e-12
Smith-Waterman score: 777; 50.4% identity (61.3% similar) in 282 aa overlap (38-250:38-318)

        10        20        30        40        50        60       
pF1KB9 VDYFAADVLMAISSGAVVHRGRPGPEGAGPAAGLDVRAARREAASPGTPGPPPP---P--
                                     ::: .: ::  :.: :: :::: :   :  
CCDS58 LDYFAAECLVSMSAGAVVHRRPPDPEGAGGAAGSEVGAAPPESALPG-PGPPGPASVPQL
        10        20        30        40        50         60      

             70         80        90                               
pF1KB9 PAASGPGPGAA-AAPHLLAASILADLRGGPGA----------------------------
       : . .:.:::. :::::::::. :::::. :                             
CCDS58 PQVPAPSPGAGGAAPHLLAASVWADLRGSSGEGSWENSGEAPRASSGFSDPIPCSVQTPC
         70        80        90       100       110       120      

                   100       110                       120         
pF1KB9 ---APG-GAS----PASSSSAASSPSSGRAPGA----------------APSA-------
          ::. ::.    : :::.: . ::.  ::::                ::.:       
CCDS58 SELAPASGAAAVCAPESSSDAPAVPSAPAAPGAPAASGGFSGGALGAGPAPAADQAPRRR
        130       140       150       160       170       180      

                130       140       150       160       170        
pF1KB9 ----AAKSHRCPFPDCAKAYYKSSHLKSHLRTHTGERPFACDWQGCDKKFARSDELARHH
           ::: :.:::: :.:::::::::::: :::::::::.:::  :::::.::::::::.
CCDS58 SVTPAAKRHQCPFPGCTKAYYKSSHLKSHQRTHTGERPFSCDWLDCDKKFTRSDELARHY
        190       200       210       220       230       240      

      180       190       200       210       220       230        
pF1KB9 RTHTGEKRFSCPLCSKRFTRSDHLAKHARRHPGFHPDLLRRPGARSTSPSDSLPCSLAGS
       :::::::::::::: :.:.:::::.::::::: .:::...  : : :   :    : . :
CCDS58 RTHTGEKRFSCPLCPKQFSRSDHLTKHARRHPTYHPDMIEYRGRRRTPRIDPPLTSEVES
        250       260       270       280       290       300      

      240       250     
pF1KB9 PAPSPAPSPAPAGL   
        : . .:.:::.     
CCDS58 SASGSGPGPAPSFTTCL
        310       320   

>>CCDS10025.1 KLF13 gene_id:51621|Hs108|chr15             (288 aa)
 initn: 846 init1: 576 opt: 671  Z-score: 320.0  bits: 66.9 E(32554): 1.7e-11
Smith-Waterman score: 678; 47.5% identity (60.2% similar) in 284 aa overlap (10-247:9-288)

               10        20        30                        40    
pF1KB9 MSAAVACVDYFAADVLMAISSGAVVHRGRPGPE----GAGPAA------------GLD--
                .:::. :...:: ::::  : :::    ::. ::            : :  
CCDS10  MAAAAYVDHFAAECLVSMSSRAVVHGPREGPESRPEGAAVAATPTLPRVEERRDGKDSA
                10        20        30        40        50         

                                50            60        70         
pF1KB9 -----VR--------------AARREAASPG---TPGP-PPPPPAASGPGP-GAAAAPHL
            .:              : :::.:.     ::   ::: :  ..::  ::::::  
CCDS10 SLFVVARILADLNQQAPAPAPAERREGAAARKARTPCRLPPPAPEPTSPGAEGAAAAPPS
      60        70        80        90       100       110         

       80         90       100       110       120        130      
pF1KB9 LAASILADLRG-GPGAAPGGASPASSSSAASSPSSGRAPGAAP-SAAAKSHRCPFPDCAK
        : :      :  :   ::   ::.:.  .      :. . :   .  ..:.: .  : :
CCDS10 PAWSEPEPEAGLEPEREPG---PAGSGEPGLRQRVRRGRSRADLESPQRKHKCHYAGCEK
     120       130          140       150       160       170      

        140       150       160       170       180       190      
pF1KB9 AYYKSSHLKSHLRTHTGERPFACDWQGCDKKFARSDELARHHRTHTGEKRFSCPLCSKRF
       .: ::::::.:::::::::::::.:: :.::::::::::::.:::::::.::::.: :::
CCDS10 VYGKSSHLKAHLRTHTGERPFACSWQDCNKKFARSDELARHYRTHTGEKKFSCPICEKRF
        180       190       200       210       220       230      

        200       210         220       230       240       250  
pF1KB9 TRSDHLAKHARRHPGFHPDLLRR--PGARSTSPSDSLPCSLAGSPAPSPAPSPAPAGL
        :::::.:::::: .::: .:.:   :.:. : ::    : :.::. ::: ::     
CCDS10 MRSDHLTKHARRHANFHPGMLQRRGGGSRTGSLSD-YSRSDASSPTISPASSP     
        240       250       260       270        280             




252 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 13:35:46 2016 done: Sun Nov  6 13:35:46 2016
 Total Scan time:  3.110 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]