Result of FASTA (omim) for
pFN21AB9650
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9650, 315 aa
1>>>pF1KB9650 315 - 315 aa - 315 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.1090+/-0.000278; mu= 6.7210+/- 0.018
mean_var=223.5851+/-44.163, 0's: 0 Z-trim(126.4): 155 B-trim: 0 in 0/58
Lambda= 0.085773
statistics sampled from 52082 (52260) to 52082 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.858), E-opt: 0.2 (0.613), width: 16
Scan time: 9.830
The best scores are: opt bits E(85289)
NP_008874 (OMIM: 601947) transcription factor SOX- ( 315) 2222 286.5 4.8e-77
NP_003098 (OMIM: 184430) transcription factor SOX- ( 474) 647 91.8 3e-18
NP_003099 (OMIM: 600898,615866) transcription fact ( 441) 586 84.2 5.3e-16
NP_009015 (OMIM: 604974) transcription factor SOX- ( 276) 439 65.8 1.2e-10
NP_008873 (OMIM: 601297) protein SOX-15 [Homo sapi ( 233) 424 63.9 3.7e-10
NP_008872 (OMIM: 602229,609136,611584,613266) tran ( 466) 422 63.9 7.1e-10
NP_005977 (OMIM: 602148) transcription factor SOX- ( 391) 417 63.2 9.7e-10
NP_003097 (OMIM: 184429,189960,206900) transcripti ( 317) 415 62.9 1e-09
NP_060889 (OMIM: 137940,601618,607823) transcripti ( 384) 404 61.6 2.9e-09
NP_055402 (OMIM: 605923) transcription factor SOX- ( 446) 400 61.2 4.6e-09
NP_004180 (OMIM: 604747) transcription factor SOX- ( 240) 394 60.2 5e-09
NP_113627 (OMIM: 612202) transcription factor SOX- ( 388) 397 60.8 5.4e-09
NP_071899 (OMIM: 610928,613674) transcription fact ( 414) 397 60.8 5.6e-09
NP_005625 (OMIM: 300123,312000,313430) transcripti ( 446) 394 60.4 7.7e-09
NP_000337 (OMIM: 114290,608160,616425) transcripti ( 509) 385 59.4 1.8e-08
XP_005245680 (OMIM: 604748) PREDICTED: transcripti ( 621) 344 54.4 7e-07
NP_005677 (OMIM: 604748) transcription factor SOX- ( 622) 344 54.4 7e-07
NP_821078 (OMIM: 604975,616803) transcription fact ( 377) 338 53.4 8.3e-07
XP_011519144 (OMIM: 604975,616803) PREDICTED: tran ( 415) 338 53.5 8.9e-07
NP_001248343 (OMIM: 604975,616803) transcription f ( 642) 338 53.7 1.2e-06
XP_016875388 (OMIM: 604975,616803) PREDICTED: tran ( 715) 338 53.7 1.3e-06
XP_016875389 (OMIM: 604975,616803) PREDICTED: tran ( 715) 338 53.7 1.3e-06
XP_016875390 (OMIM: 604975,616803) PREDICTED: tran ( 715) 338 53.7 1.3e-06
XP_016875387 (OMIM: 604975,616803) PREDICTED: tran ( 715) 338 53.7 1.3e-06
XP_016875386 (OMIM: 604975,616803) PREDICTED: tran ( 716) 338 53.7 1.3e-06
NP_001317714 (OMIM: 604975,616803) transcription f ( 728) 338 53.7 1.3e-06
XP_011519140 (OMIM: 604975,616803) PREDICTED: tran ( 729) 338 53.7 1.3e-06
XP_016875385 (OMIM: 604975,616803) PREDICTED: tran ( 750) 338 53.7 1.3e-06
NP_694534 (OMIM: 604975,616803) transcription fact ( 750) 338 53.7 1.3e-06
XP_016875384 (OMIM: 604975,616803) PREDICTED: tran ( 751) 338 53.7 1.3e-06
XP_016875382 (OMIM: 604975,616803) PREDICTED: tran ( 751) 338 53.7 1.3e-06
XP_011519136 (OMIM: 604975,616803) PREDICTED: tran ( 751) 338 53.7 1.3e-06
XP_016875379 (OMIM: 604975,616803) PREDICTED: tran ( 751) 338 53.7 1.3e-06
XP_016875380 (OMIM: 604975,616803) PREDICTED: tran ( 751) 338 53.7 1.3e-06
XP_016875383 (OMIM: 604975,616803) PREDICTED: tran ( 751) 338 53.7 1.3e-06
XP_016875381 (OMIM: 604975,616803) PREDICTED: tran ( 751) 338 53.7 1.3e-06
XP_011519139 (OMIM: 604975,616803) PREDICTED: tran ( 751) 338 53.7 1.3e-06
XP_011519137 (OMIM: 604975,616803) PREDICTED: tran ( 751) 338 53.7 1.3e-06
NP_001248344 (OMIM: 604975,616803) transcription f ( 753) 338 53.7 1.3e-06
XP_011519135 (OMIM: 604975,616803) PREDICTED: tran ( 754) 338 53.7 1.3e-06
NP_008871 (OMIM: 604975,616803) transcription fact ( 763) 338 53.7 1.4e-06
XP_011519134 (OMIM: 604975,616803) PREDICTED: tran ( 764) 338 53.7 1.4e-06
XP_016875378 (OMIM: 604975,616803) PREDICTED: tran ( 792) 338 53.8 1.4e-06
XP_016875377 (OMIM: 604975,616803) PREDICTED: tran ( 793) 338 53.8 1.4e-06
NP_003131 (OMIM: 400044,400045,480000) sex-determi ( 204) 322 51.2 2.1e-06
NP_001139283 (OMIM: 607257) transcription factor S ( 801) 331 52.9 2.6e-06
NP_059978 (OMIM: 607257) transcription factor SOX- ( 804) 331 52.9 2.6e-06
NP_001139291 (OMIM: 607257) transcription factor S ( 841) 331 52.9 2.6e-06
NP_201583 (OMIM: 607257) transcription factor SOX- ( 808) 330 52.8 2.8e-06
NP_008948 (OMIM: 606698) transcription factor SOX- ( 501) 265 44.5 0.00053
>>NP_008874 (OMIM: 601947) transcription factor SOX-12 [ (315 aa)
initn: 2222 init1: 2222 opt: 2222 Z-score: 1504.1 bits: 286.5 E(85289): 4.8e-77
Smith-Waterman score: 2222; 100.0% identity (100.0% similar) in 315 aa overlap (1-315:1-315)
10 20 30 40 50 60
pF1KB9 MVQQRGARAKRDGGPPPPGPGPAEEGAREPGWCKTPSGHIKRPMNAFMVWSQHERRKIMD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 MVQQRGARAKRDGGPPPPGPGPAEEGAREPGWCKTPSGHIKRPMNAFMVWSQHERRKIMD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 QWPDMHNAEISKRLGRRWQLLQDSEKIPFVREAERLRLKHMADYPDYKYRPRKKSKGAPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 QWPDMHNAEISKRLGRRWQLLQDSEKIPFVREAERLRLKHMADYPDYKYRPRKKSKGAPA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 KARPRPPGGSGGGSRLKPGPQLPGRGGRRAAGGPLGGGAAAPEDDDEDDDEELLEVRLVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 KARPRPPGGSGGGSRLKPGPQLPGRGGRRAAGGPLGGGAAAPEDDDEDDDEELLEVRLVE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 TPGRELWRMVPAGRAARGQAERAQGPSGEGAAAAAAASPTPSEDEEPEEEEEEAAAAEEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 TPGRELWRMVPAGRAARGQAERAQGPSGEGAAAAAAASPTPSEDEEPEEEEEEAAAAEEG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 EEETVASGEESLGFLSRLPPGPAGLDCSALDRDPDLQPPSGTSHFEFPDYCTPEVTEMIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 EEETVASGEESLGFLSRLPPGPAGLDCSALDRDPDLQPPSGTSHFEFPDYCTPEVTEMIA
250 260 270 280 290 300
310
pF1KB9 GDWRPSSIADLVFTY
:::::::::::::::
NP_008 GDWRPSSIADLVFTY
310
>>NP_003098 (OMIM: 184430) transcription factor SOX-4 [H (474 aa)
initn: 926 init1: 580 opt: 647 Z-score: 448.6 bits: 91.8 E(85289): 3e-18
Smith-Waterman score: 652; 51.6% identity (67.6% similar) in 219 aa overlap (16-217:34-246)
10 20 30 40
pF1KB9 MVQQRGARAKRDGGPPPPGPGPAEEG-AREPGWCKTPSGHIKRPM
: :: . : : .:.:::::::::::::
NP_003 QTNNAENTEALLAGESSDSGAGLELGIASSPTPGSTASTGGKADDPSWCKTPSGHIKRPM
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB9 NAFMVWSQHERRKIMDQWPDMHNAEISKRLGRRWQLLQDSEKIPFVREAERLRLKHMADY
:::::::: ::::::.: :::::::::::::.::.::.::.::::.::::::::::::::
NP_003 NAFMVWSQIERRKIMEQSPDMHNAEISKRLGKRWKLLKDSDKIPFIREAERLRLKHMADY
70 80 90 100 110 120
110 120 130 140 150
pF1KB9 PDYKYRPRKK--------SKGAPAKARPRPPG----GSGGGSRLKPGPQLPGRGGRRAAG
:::::::::: :..: :...: : ::::: : : :: ::
NP_003 PDYKYRPRKKVKSGNANSSSSAAASSKPGEKGDKVGGSGGG-----GHGGGGGGGSSNAG
130 140 150 160 170
160 170 180 190 200
pF1KB9 GPLGGGAAAPEDDDEDDDEELLEVRLVETPG----RELWRMVPAGRAARGQAERAQGPSG
: ::::.. ... ... ... : . ... :: .. :.: : . :
NP_003 GG-GGGASGGGANSKPAQKKSCGSKVAGGAGGGVSKPHAKLILAGGGGGGKAAAAAAASF
180 190 200 210 220 230
210 220 230 240 250 260
pF1KB9 EGAAAAAAASPTPSEDEEPEEEEEEAAAAEEGEEETVASGEESLGFLSRLPPGPAGLDCS
. :.:::
NP_003 AAEQAGAAALLPLGAAADHHSLYKARTPSASASASSAASASAALAAPGKHLAEKKVKRVY
240 250 260 270 280 290
>--
initn: 308 init1: 207 opt: 281 Z-score: 203.8 bits: 46.5 E(85289): 0.00013
Smith-Waterman score: 281; 34.3% identity (56.5% similar) in 239 aa overlap (96-315:248-474)
70 80 90 100 110 120
pF1KB9 HNAEISKRLGRRWQLLQDSEKIPFVREAERLRLKHMADYPDYKYRPRKKSKGAPAKARPR
: : ::. . :. : : .: :..
NP_003 LILAGGGGGGKAAAAAAASFAAEQAGAAALLPLGAAADHHSL-YKARTPSASASASS---
220 230 240 250 260 270
130 140 150 160 170
pF1KB9 PPGGSGGGSRLKPGPQLPGR--------GGRRAAGGPLGG-GAAAPEDDDEDDDEELLEV
..:.... :: .: . :: ....:.:: ::.: .: ::
NP_003 --AASASAALAAPGKHLAEKKVKRVYLFGGLGTSSSPVGGVGAGADPSDPLGLYEEEGAG
280 290 300 310 320 330
180 190 200 210 220
pF1KB9 RLVETP---GRELWRMVPA-GRAA---RGQAE-RAQGPSGEGAAAAAAASPTPSEDEEPE
..: :: :: ::. :: : :: .:. .: . :..: . ..
NP_003 CSPDAPSLSGRSSAASSPAAGRSPADHRGYASLRAASPAPSSAPSHASSSAS---SHSSS
340 350 360 370 380
230 240 250 260 270 280
pF1KB9 EEEEEAAAAEEGEEETVASGEESLGFLSRLPPGPAGLDCSALDRDPDL--QPPSGTSHFE
...... :. . . . : .: : . : . . :::::: :. .: :: ::::
NP_003 SSSSGSSSSDDEFEDDLLDLNPSSNFES-MSLGSFS-SSSALDRDLDFNFEPGSG-SHFE
390 400 410 420 430 440
290 300 310
pF1KB9 FPDYCTPEVTEMIAGDWRPSSIADLVFTY
:::::::::.:::.::: :::..:::::
NP_003 FPDYCTPEVSEMISGDWLESSISNLVFTY
450 460 470
>>NP_003099 (OMIM: 600898,615866) transcription factor S (441 aa)
initn: 820 init1: 562 opt: 586 Z-score: 408.2 bits: 84.2 E(85289): 5.3e-16
Smith-Waterman score: 604; 38.4% identity (56.9% similar) in 318 aa overlap (22-283:31-338)
10 20 30 40 50
pF1KB9 MVQQRGARAKRDGGPPPPGPGPAEEGAREPGWCKTPSGHIKRPMNAFMVWS
:. .: :::: :::::::::::::::
NP_003 MVQQAESLEAESNLPREALDTEEGEFMACSPVALDESDPDWCKTASGHIKRPMNAFMVWS
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB9 QHERRKIMDQWPDMHNAEISKRLGRRWQLLQDSEKIPFVREAERLRLKHMADYPDYKYRP
. ::::::.: :::::::::::::.::..:.:::::::.:::::::::::::::::::::
NP_003 KIERRKIMEQSPDMHNAEISKRLGKRWKMLKDSEKIPFIREAERLRLKHMADYPDYKYRP
70 80 90 100 110 120
120 130 140
pF1KB9 RKKSKGAPAKARP---RPP------------GGSGGGSRLKPGP-------QLPGRGGRR
::: : :. :.: . : ::..::.. . : . :. .: .
NP_003 RKKPKMDPS-AKPSASQSPEKSAAGGGGGSAGGGAGGAKTSKGSSKKCGKLKAPAAAGAK
130 140 150 160 170
150 160 170
pF1KB9 AAGGPL-----------------------GGGAAAP--------EDDDEDDDEELLEVRL
:..: :::.:. ::::.:::.. :....
NP_003 AGAGKAAQSGDYGGAGDDYVLGSLRVSGSGGGGAGKTVKCVFLDEDDDDDDDDDELQLQI
180 190 200 210 220 230
180 190 200 210 220 230
pF1KB9 VETPGRELWRMVPAGRAARGQAERAQGPSGEGAAAAAAASPTPSEDEEPEEEEEEAAAAE
. : .: . : . . ... . . .: . :::: : . : : ..
NP_003 KQEPDEED-EEPPHQQLLQPPGQQPSQLLRRYNVAKVPASPTLSSSAESPEGASLYDEVR
240 250 260 270 280 290
240 250 260 270 280 290
pF1KB9 EGEEETVASGEE---SLGFLSRLPPGPAGLDCSALDRDPDLQPPSGTSHFEFPDYCTPEV
: ...: . :. ... : : . .: :.: :. :
NP_003 AGATSGAGGGSRLYYSFKNITKQHPPPLA--------QPALSPASSRSVSTSSSSSSGSS
300 310 320 330 340 350
300 310
pF1KB9 TEMIAGDWRPSSIADLVFTY
NP_003 SGSSGEDADDLMFDLSLNFSQSAHSASEQQLGGGAAAGNLSLSLVDKDLDSFSEGSLGSH
360 370 380 390 400 410
>>NP_009015 (OMIM: 604974) transcription factor SOX-21 [ (276 aa)
initn: 487 init1: 385 opt: 439 Z-score: 312.4 bits: 65.8 E(85289): 1.2e-10
Smith-Waterman score: 439; 34.4% identity (57.5% similar) in 273 aa overlap (36-295:4-265)
10 20 30 40 50 60
pF1KB9 GARAKRDGGPPPPGPGPAEEGAREPGWCKTPSGHIKRPMNAFMVWSQHERRKIMDQWPDM
: :.:::::::::::. .:::. .. : :
NP_009 MSKPVDHVKRPMNAFMVWSRAQRRKMAQENPKM
10 20 30
70 80 90 100 110 120
pF1KB9 HNAEISKRLGRRWQLLQDSEKIPFVREAERLRLKHMADYPDYKYRPRKKSKGAPAK---A
::.::::::: .:.:: .::: ::. ::.::: :: ..::::::::.: : : :
NP_009 HNSEISKRLGAEWKLLTESEKRPFIDEAKRLRAMHMKEHPDYKYRPRRKPKTLLKKDKFA
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB9 RPRPPGGSGGGSRLKPGPQLPGRGGRRAAGGPLGGGAAAPEDDDEDDDEELLEVRLVETP
: : : :: : : . .: .:.. ::. .::. . .. . . .
NP_009 FPVPYG--LGGVADAEHPALKAGAGLHAGA----GGGLVPESLLANPEKAAAAA--AAAA
100 110 120 130 140
190 200 210 220 230
pF1KB9 GRELWRMVPAGRAARGQAERAQGPSGEGAAAAAAASPTPSEDEEPEEEE----EEAAAAE
.: .. . :. :: . : : .: . .. : . : . : .:.:
NP_009 ARVFFPQSAAAAAAAAAAAAAGSPYSLLDLGSKMAEISSSSSGLPYASSLGYPTAGAGAF
150 160 170 180 190 200
240 250 260 270 280 290
pF1KB9 EGEEETVASGEESLGFLSRLPPGPAG------LDCSALDRDPDLQPPSGTSHFEFPDYCT
.: ..:.. . : .. :.:.. .::: .: :::: ... .: .
NP_009 HGAAAAAAAAAAAAGGHTHSHPSPGNPGYMIPCNCSAWP-SPGLQPP--LAYILLPGMGK
210 220 230 240 250 260
300 310
pF1KB9 PEVTEMIAGDWRPSSIADLVFTY
:..
NP_009 PQLDPYPAAYAAAL
270
>>NP_008873 (OMIM: 601297) protein SOX-15 [Homo sapiens] (233 aa)
initn: 450 init1: 392 opt: 424 Z-score: 303.3 bits: 63.9 E(85289): 3.7e-10
Smith-Waterman score: 425; 50.7% identity (68.8% similar) in 144 aa overlap (21-161:28-153)
10 20 30 40 50
pF1KB9 MVQQRGARAKRDGGPPPPGPGPAE-EGAREPGWCKT-PSGHIKRPMNAFMVWS
:: : ::: :. : : ..:::::::::::
NP_008 MALPGSSQDQAWSLEPPAATAAASSSSGPQEREGAGSPAAPGTLPLEKVKRPMNAFMVWS
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB9 QHERRKIMDQWPDMHNAEISKRLGRRWQLLQDSEKIPFVREAERLRLKHMADYPDYKYRP
. .::.. .: : :::.::::::: .:.::...:: :::.::.::: .:. :::::::::
NP_008 SAQRRQMAQQNPKMHNSEISKRLGAQWKLLDEDEKRPFVEEAKRLRARHLRDYPDYKYRP
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB9 RKKSKGAPAKARPRPPGGSGGGSRLKPGPQLPGRG-GRRAAGGPLGGGAAAPEDDDEDDD
:.:.:.. : ::. :.: : :.:::: : . :
NP_008 RRKAKSSGA------------------GPSRCGQGRGNLASGGPLWGPGYATTQPSRGFG
130 140 150 160
180 190 200 210 220 230
pF1KB9 EELLEVRLVETPGRELWRMVPAGRAARGQAERAQGPSGEGAAAAAAASPTPSEDEEPEEE
NP_008 YRPPSYSTAYLPGSYGSSHCKLEAPSPCSLPQSDPRLQGELLPTYTHYLPPGSPTPYNPP
170 180 190 200 210 220
>>NP_008872 (OMIM: 602229,609136,611584,613266) transcri (466 aa)
initn: 441 init1: 414 opt: 422 Z-score: 298.2 bits: 63.9 E(85289): 7.1e-10
Smith-Waterman score: 446; 33.2% identity (57.2% similar) in 271 aa overlap (39-285:103-369)
10 20 30 40 50 60
pF1KB9 AKRDGGPPPPGPGPAEEGAREPGWCKTPSGHIKRPMNAFMVWSQHERRKIMDQWPDMHNA
:.::::::::::.: :::. ::.: .:::
NP_008 REAVSQVLSGYDWTLVPMPVRVNGASKSKPHVKRPMNAFMVWAQAARRKLADQYPHLHNA
80 90 100 110 120 130
70 80 90 100 110 120
pF1KB9 EISKRLGRRWQLLQDSEKIPFVREAERLRLKHMADYPDYKYRPRKKSKGAPAKARPRPPG
:.:: ::. :.::..:.: ::..::::::..: :.:::::.::....: :... . ::
NP_008 ELSKTLGKLWRLLNESDKRPFIEEAERLRMQHKKDHPDYKYQPRRRKNGKAAQGEAECPG
140 150 160 170 180 190
130 140 150 160 170
pF1KB9 G---SGGGSRLKP---GPQL----PGRGGRRAAGGPL--GGGAAAPEDDDEDDDEELLEV
: .:: . .. . .: ::.:. . :.: .: . .: ::
NP_008 GEAEQGGTAAIQAHYKSAHLDHRHPGEGSPMSDGNPEHPSGQSHGPPTPPTTPKTELQSG
200 210 220 230 240 250
180 190 200 210 220 230
pF1KB9 RL-VETPGRELWR----MVPAGRAARGQAERAQGPSGEGAAAAAAASPTPSEDEEPEEEE
. . :: . . . : . :. . . : .: . : . . .
NP_008 KADPKRDGRSMGEGGKPHIDFGNVDIGEISHEVMSNMETFDVAELDQYLPPNGHPGHVSS
260 270 280 290 300 310
240 250 260 270 280
pF1KB9 EEAAAAEEGEEETVASGEESLGFLSRLPPG-------PAGLDCSALDRDPDLQPPSGTSH
::. : .::::. . ..:. ::: : :.: .: . . :.: :
NP_008 YSAAGYGLGSALAVASGHSA--WISK-PPGVALPTVSPPGVDAKAQVKT-ETAGPQGPPH
320 330 340 350 360
290 300 310
pF1KB9 FEFPDYCTPEVTEMIAGDWRPSSIADLVFTY
.
NP_008 YTDQPSTSQIAYTSLSLPHYGSAFPSISRPQFDYSDHQPSGPYYGHSGQASGLYSAFSYM
370 380 390 400 410 420
>>NP_005977 (OMIM: 602148) transcription factor SOX-1 [H (391 aa)
initn: 413 init1: 371 opt: 417 Z-score: 295.8 bits: 63.2 E(85289): 9.7e-10
Smith-Waterman score: 428; 34.1% identity (54.5% similar) in 279 aa overlap (6-269:15-280)
10 20 30 40
pF1KB9 MVQQRGARAKRD-GGPPPPGPGPAEEGAREPGW-CKTPSGHIKRPMNAFMV
::.: . .:: : : . :. : :. . ..:::::::::
NP_005 MYSMMMETDLHSPGGAQAPTNLSGPAGAGGGGGGGGGGGGGGGAKANQDRVKRPMNAFMV
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB9 WSQHERRKIMDQWPDMHNAEISKRLGRRWQLLQDSEKIPFVREAERLRLKHMADYPDYKY
::. .:::. .. : :::.::::::: .:......:: ::. ::.::: :: ..:::::
NP_005 WSRGQRRKMAQENPKMHNSEISKRLGAEWKVMSEAEKRPFIDEAKRLRALHMKEHPDYKY
70 80 90 100 110 120
110 120 130 140 150
pF1KB9 RPRKKSKGAPAKARPRPPGG------SGGGSRLKPGPQLPGRG----GRR--AAGGPLGG
:::.:.: : . :: .:::. . : . : : :.: . :: ::
NP_005 RPRRKTKTLLKKDKYSLAGGLLAAGAGGGGAAVAMGVGV-GVGAAAVGQRLESPGGAAGG
130 140 150 160 170
160 170 180 190 200 210
pF1KB9 GAAAPEDDDEDDDEELLEVRLVETPGRELWRMVPAGRAARGQAERAQGPSGEGAAAAA-A
: : . . :: . :. ..: .: :.. :: :
NP_005 GYAHVNGWANG-----------AYPGSVAAAAAAAAMMQEAQLAYGQHPGAGGAHPHAHP
180 190 200 210 220
220 230 240 250 260 270
pF1KB9 ASPTPSEDEEPEEEEEEAAAAEEGEEETVASGEESLGFLSRLPPGPAGLDCSALDRDPDL
: : : . . .. . . : . . .: :..: : : .:: .:
NP_005 AHPHPHHPHAHPHNPQPMHRYDMGALQ-YSPISNSQGYMSASPSGYGGLPYGAAAAAAAA
230 240 250 260 270 280
280 290 300 310
pF1KB9 QPPSGTSHFEFPDYCTPEVTEMIAGDWRPSSIADLVFTY
NP_005 AGGAHQNSAVAAAAAAAAASSGALGALGSLVKSEPSGSPPAPAHSRAPCPGDLREMISMY
290 300 310 320 330 340
>>NP_003097 (OMIM: 184429,189960,206900) transcription f (317 aa)
initn: 432 init1: 386 opt: 415 Z-score: 295.6 bits: 62.9 E(85289): 1e-09
Smith-Waterman score: 415; 46.9% identity (65.5% similar) in 145 aa overlap (17-152:11-152)
10 20 30 40 50
pF1KB9 MVQQRGARAKRDGGPPPPGP-------GPAEEGAREPGWCKTPSGHIKRPMNAFMVWSQH
:::: : .: : :. ..:::::::::::.
NP_003 MYNMMETELKPPGPQQTSGGGGGNSTAAAAGGNQKNSPDRVKRPMNAFMVWSRG
10 20 30 40 50
60 70 80 90 100 110
pF1KB9 ERRKIMDQWPDMHNAEISKRLGRRWQLLQDSEKIPFVREAERLRLKHMADYPDYKYRPRK
.:::. .. : :::.::::::: .:.::...:: ::. ::.::: :: ..::::::::.
NP_003 QRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYKYRPRR
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB9 KSKGAPAKARPRPPGG--SGGGSRLKPGPQLPGRGGRRAAGGPLGGGAAAPEDDDEDDDE
:.: : . ::: . ::. . : : :. .::
NP_003 KTKTLMKKDKYTLPGGLLAPGGNSMASGV---GVGAGLGAGVNQRMDSYAHMNGWSNGSY
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB9 ELLEVRLVETPGRELWRMVPAGRAARGQAERAQGPSGEGAAAAAAASPTPSEDEEPEEEE
NP_003 SMMQDQLGYPQHPGLNAHGAAQMQPMHRYDVSALQYNSMTSSQTYMNGSPTYSMSYSQQG
180 190 200 210 220 230
>>NP_060889 (OMIM: 137940,601618,607823) transcription f (384 aa)
initn: 377 init1: 352 opt: 404 Z-score: 287.2 bits: 61.6 E(85289): 2.9e-09
Smith-Waterman score: 405; 35.5% identity (56.2% similar) in 256 aa overlap (16-241:58-310)
10 20 30 40
pF1KB9 MVQQRGARAKRDGGPPPPGPGPAEEGAREPGWCKTPSG---HIKR
:: .: :.. : : . .. .:.:
NP_060 AAADTRGLAAGPAALAAPAAPASPPSPQRSPPRSPEPGRYGLSPAGRGERQAADESRIRR
30 40 50 60 70 80
50 60 70 80 90 100
pF1KB9 PMNAFMVWSQHERRKIMDQWPDMHNAEISKRLGRRWQLLQDSEKIPFVREAERLRLKHMA
::::::::.. ::... .: ::.::: .:: ::. :. :. .:: :::.::::::..:.
NP_060 PMNAFMVWAKDERKRLAQQNPDLHNAVLSKMLGKAWKELNAAEKRPFVEEAERLRVQHLR
90 100 110 120 130 140
110 120 130 140
pF1KB9 DYPDYKYRPRKKSKG---------------APAKARPRP-PGGSGGGS---RLKP-GPQL
:.:.::::::.:... :: . :.: :..::.. .: : : ..
NP_060 DHPNYKYRPRRKKQARKARRLEPGLLLPGLAPPQPPPEPFPAASGSARAFRELPPLGAEF
150 160 170 180 190 200
150 160 170 180 190
pF1KB9 PGRGGRRAAGGPLGG---GAAA--PEDDDEDDDEELLEVRLVETPGRELWRMVPAG--RA
: : .:: : : :: : .: : : .: :: : :.: :
NP_060 DGLGLPTPERSPLDGLEPGEAAFFPPPA-APEDCALRPFRAPYAP-TELSRD-PGGCYGA
210 220 230 240 250 260
200 210 220 230 240 250
pF1KB9 ARGQAERAQGPSGEGAAAAAAASPTPSEDEEPEEEEEEAAAAEEGEEETVASGEESLGFL
..: :. :.. :. .. ::. : :: : .:
NP_060 PLAEALRTAPPAAPLAGLYYGTLGTPGPYPGPLSPPPEAPPLESAEPLGPAADLWADVDL
270 280 290 300 310 320
260 270 280 290 300 310
pF1KB9 SRLPPGPAGLDCSALDRDPDLQPPSGTSHFEFPDYCTPEVTEMIAGDWRPSSIADLVFTY
NP_060 TEFDQYLNCSRTRPDAPGLPYHVALAKLGPRAMSCPEESSLISALSDASSAVYYSACISG
330 340 350 360 370 380
>>NP_055402 (OMIM: 605923) transcription factor SOX-8 [H (446 aa)
initn: 383 init1: 383 opt: 400 Z-score: 283.8 bits: 61.2 E(85289): 4.6e-09
Smith-Waterman score: 417; 49.6% identity (69.8% similar) in 139 aa overlap (20-158:85-211)
10 20 30 40
pF1KB9 MVQQRGARAKRDGGPPPPGPGPAEEGAREPGWCKTPSGHIKRPMNAFMV
: :.. :. : . :.:::::::::
NP_055 DPAEAADERFPACIRDAVSQVLKGYDWSLVPMPVRGGG---GGALKAKPHVKRPMNAFMV
60 70 80 90 100 110
50 60 70 80 90 100
pF1KB9 WSQHERRKIMDQWPDMHNAEISKRLGRRWQLLQDSEKIPFVREAERLRLKHMADYPDYKY
:.: :::. ::.: .::::.:: ::. :.::..::: :::.::::::..: :.:::::
NP_055 WAQAARRKLADQYPHLHNAELSKTLGKLWRLLSESEKRPFVEEAERLRVQHKKDHPDYKY
120 130 140 150 160 170
110 120 130 140 150 160
pF1KB9 RPRKKSKGAPAKARPRPPGGSGGGSRLKPGPQLPGRGGRRAAGGPLGGGAAAPEDDDEDD
.::.... ::: : : . : . ::. :: :. : . :: :
NP_055 QPRRRKS---AKA-----GHSDSDSGAELGPH-PGGGAVYKAEAGLGDGHHHGDHTGQTH
180 190 200 210 220
170 180 190 200 210 220
pF1KB9 DEELLEVRLVETPGRELWRMVPAGRAARGQAERAQGPSGEGAAAAAAASPTPSEDEEPEE
NP_055 GPPTPPTTPKTELQQAGAKPELKLEGRRPVDSGRQNIDFSNVDISELSSEVMGTMDAFDV
230 240 250 260 270 280
315 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 22:54:03 2016 done: Sat Nov 5 22:54:05 2016
Total Scan time: 9.830 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]