Result of FASTA (ccds) for
pFN21AB9650
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9650, 315 aa
1>>>pF1KB9650 315 - 315 aa - 315 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.6548+/-0.000695; mu= 9.7906+/- 0.042
mean_var=211.1230+/-42.814, 0's: 0 Z-trim(118.6): 57 B-trim: 418 in 2/52
Lambda= 0.088269
statistics sampled from 19543 (19603) to 19543 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.854), E-opt: 0.2 (0.602), width: 16
Scan time: 3.410
The best scores are: opt bits E(32554)
CCDS12995.1 SOX12 gene_id:6666|Hs108|chr20 ( 315) 2222 294.3 8.4e-80
CCDS4547.1 SOX4 gene_id:6659|Hs108|chr6 ( 474) 647 93.9 2.6e-19
CCDS1654.1 SOX11 gene_id:6664|Hs108|chr2 ( 441) 586 86.1 5.5e-17
CCDS9473.1 SOX21 gene_id:11166|Hs108|chr13 ( 276) 439 67.2 1.7e-11
CCDS32549.1 SOX15 gene_id:6665|Hs108|chr17 ( 233) 424 65.2 5.8e-11
>>CCDS12995.1 SOX12 gene_id:6666|Hs108|chr20 (315 aa)
initn: 2222 init1: 2222 opt: 2222 Z-score: 1546.2 bits: 294.3 E(32554): 8.4e-80
Smith-Waterman score: 2222; 100.0% identity (100.0% similar) in 315 aa overlap (1-315:1-315)
10 20 30 40 50 60
pF1KB9 MVQQRGARAKRDGGPPPPGPGPAEEGAREPGWCKTPSGHIKRPMNAFMVWSQHERRKIMD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MVQQRGARAKRDGGPPPPGPGPAEEGAREPGWCKTPSGHIKRPMNAFMVWSQHERRKIMD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 QWPDMHNAEISKRLGRRWQLLQDSEKIPFVREAERLRLKHMADYPDYKYRPRKKSKGAPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 QWPDMHNAEISKRLGRRWQLLQDSEKIPFVREAERLRLKHMADYPDYKYRPRKKSKGAPA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 KARPRPPGGSGGGSRLKPGPQLPGRGGRRAAGGPLGGGAAAPEDDDEDDDEELLEVRLVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 KARPRPPGGSGGGSRLKPGPQLPGRGGRRAAGGPLGGGAAAPEDDDEDDDEELLEVRLVE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 TPGRELWRMVPAGRAARGQAERAQGPSGEGAAAAAAASPTPSEDEEPEEEEEEAAAAEEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 TPGRELWRMVPAGRAARGQAERAQGPSGEGAAAAAAASPTPSEDEEPEEEEEEAAAAEEG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 EEETVASGEESLGFLSRLPPGPAGLDCSALDRDPDLQPPSGTSHFEFPDYCTPEVTEMIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 EEETVASGEESLGFLSRLPPGPAGLDCSALDRDPDLQPPSGTSHFEFPDYCTPEVTEMIA
250 260 270 280 290 300
310
pF1KB9 GDWRPSSIADLVFTY
:::::::::::::::
CCDS12 GDWRPSSIADLVFTY
310
>>CCDS4547.1 SOX4 gene_id:6659|Hs108|chr6 (474 aa)
initn: 926 init1: 580 opt: 647 Z-score: 460.0 bits: 93.9 E(32554): 2.6e-19
Smith-Waterman score: 652; 51.6% identity (67.6% similar) in 219 aa overlap (16-217:34-246)
10 20 30 40
pF1KB9 MVQQRGARAKRDGGPPPPGPGPAEEG-AREPGWCKTPSGHIKRPM
: :: . : : .:.:::::::::::::
CCDS45 QTNNAENTEALLAGESSDSGAGLELGIASSPTPGSTASTGGKADDPSWCKTPSGHIKRPM
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB9 NAFMVWSQHERRKIMDQWPDMHNAEISKRLGRRWQLLQDSEKIPFVREAERLRLKHMADY
:::::::: ::::::.: :::::::::::::.::.::.::.::::.::::::::::::::
CCDS45 NAFMVWSQIERRKIMEQSPDMHNAEISKRLGKRWKLLKDSDKIPFIREAERLRLKHMADY
70 80 90 100 110 120
110 120 130 140 150
pF1KB9 PDYKYRPRKK--------SKGAPAKARPRPPG----GSGGGSRLKPGPQLPGRGGRRAAG
:::::::::: :..: :...: : ::::: : : :: ::
CCDS45 PDYKYRPRKKVKSGNANSSSSAAASSKPGEKGDKVGGSGGG-----GHGGGGGGGSSNAG
130 140 150 160 170
160 170 180 190 200
pF1KB9 GPLGGGAAAPEDDDEDDDEELLEVRLVETPG----RELWRMVPAGRAARGQAERAQGPSG
: ::::.. ... ... ... : . ... :: .. :.: : . :
CCDS45 GG-GGGASGGGANSKPAQKKSCGSKVAGGAGGGVSKPHAKLILAGGGGGGKAAAAAAASF
180 190 200 210 220 230
210 220 230 240 250 260
pF1KB9 EGAAAAAAASPTPSEDEEPEEEEEEAAAAEEGEEETVASGEESLGFLSRLPPGPAGLDCS
. :.:::
CCDS45 AAEQAGAAALLPLGAAADHHSLYKARTPSASASASSAASASAALAAPGKHLAEKKVKRVY
240 250 260 270 280 290
>>CCDS1654.1 SOX11 gene_id:6664|Hs108|chr2 (441 aa)
initn: 820 init1: 562 opt: 586 Z-score: 418.4 bits: 86.1 E(32554): 5.5e-17
Smith-Waterman score: 604; 38.4% identity (56.9% similar) in 318 aa overlap (22-283:31-338)
10 20 30 40 50
pF1KB9 MVQQRGARAKRDGGPPPPGPGPAEEGAREPGWCKTPSGHIKRPMNAFMVWS
:. .: :::: :::::::::::::::
CCDS16 MVQQAESLEAESNLPREALDTEEGEFMACSPVALDESDPDWCKTASGHIKRPMNAFMVWS
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB9 QHERRKIMDQWPDMHNAEISKRLGRRWQLLQDSEKIPFVREAERLRLKHMADYPDYKYRP
. ::::::.: :::::::::::::.::..:.:::::::.:::::::::::::::::::::
CCDS16 KIERRKIMEQSPDMHNAEISKRLGKRWKMLKDSEKIPFIREAERLRLKHMADYPDYKYRP
70 80 90 100 110 120
120 130 140
pF1KB9 RKKSKGAPAKARP---RPP------------GGSGGGSRLKPGP-------QLPGRGGRR
::: : :. :.: . : ::..::.. . : . :. .: .
CCDS16 RKKPKMDPS-AKPSASQSPEKSAAGGGGGSAGGGAGGAKTSKGSSKKCGKLKAPAAAGAK
130 140 150 160 170
150 160 170
pF1KB9 AAGGPL-----------------------GGGAAAP--------EDDDEDDDEELLEVRL
:..: :::.:. ::::.:::.. :....
CCDS16 AGAGKAAQSGDYGGAGDDYVLGSLRVSGSGGGGAGKTVKCVFLDEDDDDDDDDDELQLQI
180 190 200 210 220 230
180 190 200 210 220 230
pF1KB9 VETPGRELWRMVPAGRAARGQAERAQGPSGEGAAAAAAASPTPSEDEEPEEEEEEAAAAE
. : .: . : . . ... . . .: . :::: : . : : ..
CCDS16 KQEPDEED-EEPPHQQLLQPPGQQPSQLLRRYNVAKVPASPTLSSSAESPEGASLYDEVR
240 250 260 270 280 290
240 250 260 270 280 290
pF1KB9 EGEEETVASGEE---SLGFLSRLPPGPAGLDCSALDRDPDLQPPSGTSHFEFPDYCTPEV
: ...: . :. ... : : . .: :.: :. :
CCDS16 AGATSGAGGGSRLYYSFKNITKQHPPPLA--------QPALSPASSRSVSTSSSSSSGSS
300 310 320 330 340 350
300 310
pF1KB9 TEMIAGDWRPSSIADLVFTY
CCDS16 SGSSGEDADDLMFDLSLNFSQSAHSASEQQLGGGAAAGNLSLSLVDKDLDSFSEGSLGSH
360 370 380 390 400 410
>>CCDS9473.1 SOX21 gene_id:11166|Hs108|chr13 (276 aa)
initn: 487 init1: 385 opt: 439 Z-score: 319.7 bits: 67.2 E(32554): 1.7e-11
Smith-Waterman score: 439; 34.4% identity (57.5% similar) in 273 aa overlap (36-295:4-265)
10 20 30 40 50 60
pF1KB9 GARAKRDGGPPPPGPGPAEEGAREPGWCKTPSGHIKRPMNAFMVWSQHERRKIMDQWPDM
: :.:::::::::::. .:::. .. : :
CCDS94 MSKPVDHVKRPMNAFMVWSRAQRRKMAQENPKM
10 20 30
70 80 90 100 110 120
pF1KB9 HNAEISKRLGRRWQLLQDSEKIPFVREAERLRLKHMADYPDYKYRPRKKSKGAPAK---A
::.::::::: .:.:: .::: ::. ::.::: :: ..::::::::.: : : :
CCDS94 HNSEISKRLGAEWKLLTESEKRPFIDEAKRLRAMHMKEHPDYKYRPRRKPKTLLKKDKFA
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB9 RPRPPGGSGGGSRLKPGPQLPGRGGRRAAGGPLGGGAAAPEDDDEDDDEELLEVRLVETP
: : : :: : : . .: .:.. ::. .::. . .. . . .
CCDS94 FPVPYG--LGGVADAEHPALKAGAGLHAGA----GGGLVPESLLANPEKAAAAA--AAAA
100 110 120 130 140
190 200 210 220 230
pF1KB9 GRELWRMVPAGRAARGQAERAQGPSGEGAAAAAAASPTPSEDEEPEEEE----EEAAAAE
.: .. . :. :: . : : .: . .. : . : . : .:.:
CCDS94 ARVFFPQSAAAAAAAAAAAAAGSPYSLLDLGSKMAEISSSSSGLPYASSLGYPTAGAGAF
150 160 170 180 190 200
240 250 260 270 280 290
pF1KB9 EGEEETVASGEESLGFLSRLPPGPAG------LDCSALDRDPDLQPPSGTSHFEFPDYCT
.: ..:.. . : .. :.:.. .::: .: :::: ... .: .
CCDS94 HGAAAAAAAAAAAAGGHTHSHPSPGNPGYMIPCNCSAWP-SPGLQPP--LAYILLPGMGK
210 220 230 240 250 260
300 310
pF1KB9 PEVTEMIAGDWRPSSIADLVFTY
:..
CCDS94 PQLDPYPAAYAAAL
270
>>CCDS32549.1 SOX15 gene_id:6665|Hs108|chr17 (233 aa)
initn: 450 init1: 392 opt: 424 Z-score: 310.3 bits: 65.2 E(32554): 5.8e-11
Smith-Waterman score: 425; 50.7% identity (68.8% similar) in 144 aa overlap (21-161:28-153)
10 20 30 40 50
pF1KB9 MVQQRGARAKRDGGPPPPGPGPAE-EGAREPGWCKT-PSGHIKRPMNAFMVWS
:: : ::: :. : : ..:::::::::::
CCDS32 MALPGSSQDQAWSLEPPAATAAASSSSGPQEREGAGSPAAPGTLPLEKVKRPMNAFMVWS
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB9 QHERRKIMDQWPDMHNAEISKRLGRRWQLLQDSEKIPFVREAERLRLKHMADYPDYKYRP
. .::.. .: : :::.::::::: .:.::...:: :::.::.::: .:. :::::::::
CCDS32 SAQRRQMAQQNPKMHNSEISKRLGAQWKLLDEDEKRPFVEEAKRLRARHLRDYPDYKYRP
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB9 RKKSKGAPAKARPRPPGGSGGGSRLKPGPQLPGRG-GRRAAGGPLGGGAAAPEDDDEDDD
:.:.:.. : ::. :.: : :.:::: : . :
CCDS32 RRKAKSSGA------------------GPSRCGQGRGNLASGGPLWGPGYATTQPSRGFG
130 140 150 160
180 190 200 210 220 230
pF1KB9 EELLEVRLVETPGRELWRMVPAGRAARGQAERAQGPSGEGAAAAAAASPTPSEDEEPEEE
CCDS32 YRPPSYSTAYLPGSYGSSHCKLEAPSPCSLPQSDPRLQGELLPTYTHYLPPGSPTPYNPP
170 180 190 200 210 220
315 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 22:54:03 2016 done: Sat Nov 5 22:54:03 2016
Total Scan time: 3.410 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]