FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9602, 489 aa
  1>>>pF1KB9602 489 - 489 aa - 489 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 13.7859+/-0.0012; mu= -16.8648+/- 0.073
 mean_var=620.7373+/-126.687, 0's: 0 Z-trim(117.1): 83  B-trim: 232 in 2/53
 Lambda= 0.051478
 statistics sampled from 17762 (17842) to 17762 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.8), E-opt: 0.2 (0.548), width:  16
 Scan time:  3.720

The best scores are:                                      opt bits E(32554)
CCDS9636.1 FOXG1 gene_id:2290|Hs108|chr14          ( 489) 3454 271.0 2.1e-72


>>CCDS9636.1 FOXG1 gene_id:2290|Hs108|chr14               (489 aa)
 initn: 3454 init1: 3454 opt: 3454  Z-score: 1413.5  bits: 271.0 E(32554): 2.1e-72
Smith-Waterman score: 3454; 100.0% identity (100.0% similar) in 489 aa overlap (1-489:1-489)

               10        20        30        40        50        60
pF1KB9 MLDMGDRKEVKMIPKSSFSINSLVPEAVQNDNHHASHGHHNSHHPQHHHHHHHHHHHPPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 MLDMGDRKEVKMIPKSSFSINSLVPEAVQNDNHHASHGHHNSHHPQHHHHHHHHHHHPPP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 PAPQPPPPPQQQQPPPPPPPAPQPPQTRGAPAADDDKGPQQLLLPPPPPPPPAAALDGAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 PAPQPPPPPQQQQPPPPPPPAPQPPQTRGAPAADDDKGPQQLLLPPPPPPPPAAALDGAK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 ADGLGGKGEPGGGPGELAPVGPDEKEKGAGAGGEEKKGAGEGGKDGEGGKEGEKKNGKYE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 ADGLGGKGEPGGGPGELAPVGPDEKEKGAGAGGEEKKGAGEGGKDGEGGKEGEKKNGKYE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 KPPFSYNALIMMAIRQSPEKRLTLNGIYEFIMKNFPYYRENKQGWQNSIRHNLSLNKCFV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 KPPFSYNALIMMAIRQSPEKRLTLNGIYEFIMKNFPYYRENKQGWQNSIRHNLSLNKCFV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 KVPRHYDDPGKGNYWMLDPSSDDVFIGGTTGKLRRRSTTSRAKLAFKRGARLTSTGLTFM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 KVPRHYDDPGKGNYWMLDPSSDDVFIGGTTGKLRRRSTTSRAKLAFKRGARLTSTGLTFM
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 DRAGSLYWPMSPFLSLHHPRASSTLSYNGTTSAYPSHPMPYSSVLTQNSLGNNHSFSTAN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 DRAGSLYWPMSPFLSLHHPRASSTLSYNGTTSAYPSHPMPYSSVLTQNSLGNNHSFSTAN
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 GLSVDRLVNGEIPYATHHLTAAALAASVPCGLSVPCSGTYSLNPCSVNLLAGQTSYFFPH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 GLSVDRLVNGEIPYATHHLTAAALAASVPCGLSVPCSGTYSLNPCSVNLLAGQTSYFFPH
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB9 VPHPSMTSQSSTSMSARAASSSTSPQAPSTLPCESLRPSLPSFTTGLSGGLSDYFTHQNQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 VPHPSMTSQSSTSMSARAASSSTSPQAPSTLPCESLRPSLPSFTTGLSGGLSDYFTHQNQ
              430       440       450       460       470       480

                
pF1KB9 GSSSNPLIH
       :::::::::
CCDS96 GSSSNPLIH
                




489 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 05:52:33 2016 done: Tue Nov  8 05:52:34 2016
 Total Scan time:  3.720 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]