FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9438, 183 aa
  1>>>pF1KB9438 183 - 183 aa - 183 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2603+/-0.000887; mu= 12.3577+/- 0.053
 mean_var=55.9807+/-11.527, 0's: 0 Z-trim(104.4): 27  B-trim: 882 in 2/48
 Lambda= 0.171417
 statistics sampled from 7896 (7902) to 7896 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.63), E-opt: 0.2 (0.243), width:  16
 Scan time:  1.800

The best scores are:                                      opt bits E(32554)
CCDS1306.1 TNFSF4 gene_id:7292|Hs108|chr1          ( 183) 1191 302.6 8.8e-83
CCDS72985.1 TNFSF4 gene_id:7292|Hs108|chr1         ( 133)  857 220.0 4.8e-58


>>CCDS1306.1 TNFSF4 gene_id:7292|Hs108|chr1               (183 aa)
 initn: 1191 init1: 1191 opt: 1191  Z-score: 1599.7  bits: 302.6 E(32554): 8.8e-83
Smith-Waterman score: 1191; 100.0% identity (100.0% similar) in 183 aa overlap (1-183:1-183)

               10        20        30        40        50        60
pF1KB9 MERVQPLEENVGNAARPRFERNKLLLVASVIQGLGLLLCFTYICLHFSALQVSHRYPRIQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MERVQPLEENVGNAARPRFERNKLLLVASVIQGLGLLLCFTYICLHFSALQVSHRYPRIQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 SIKVQFTEYKKEKGFILTSQKEDEIMKVQNNSVIINCDGFYLISLKGYFSQEVNISLHYQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SIKVQFTEYKKEKGFILTSQKEDEIMKVQNNSVIINCDGFYLISLKGYFSQEVNISLHYQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 KDEEPLFQLKKVRSVNSLMVASLTYKDKVYLNVTTDNTSLDDFHVNGGELILIHQNPGEF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 KDEEPLFQLKKVRSVNSLMVASLTYKDKVYLNVTTDNTSLDDFHVNGGELILIHQNPGEF
              130       140       150       160       170       180

          
pF1KB9 CVL
       :::
CCDS13 CVL
          

>>CCDS72985.1 TNFSF4 gene_id:7292|Hs108|chr1              (133 aa)
 initn: 857 init1: 857 opt: 857  Z-score: 1155.6  bits: 220.0 E(32554): 4.8e-58
Smith-Waterman score: 857; 100.0% identity (100.0% similar) in 132 aa overlap (52-183:2-133)

              30        40        50        60        70        80 
pF1KB9 NKLLLVASVIQGLGLLLCFTYICLHFSALQVSHRYPRIQSIKVQFTEYKKEKGFILTSQK
                                     ::::::::::::::::::::::::::::::
CCDS72                              MVSHRYPRIQSIKVQFTEYKKEKGFILTSQK
                                            10        20        30 

              90       100       110       120       130       140 
pF1KB9 EDEIMKVQNNSVIINCDGFYLISLKGYFSQEVNISLHYQKDEEPLFQLKKVRSVNSLMVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 EDEIMKVQNNSVIINCDGFYLISLKGYFSQEVNISLHYQKDEEPLFQLKKVRSVNSLMVA
              40        50        60        70        80        90 

             150       160       170       180   
pF1KB9 SLTYKDKVYLNVTTDNTSLDDFHVNGGELILIHQNPGEFCVL
       ::::::::::::::::::::::::::::::::::::::::::
CCDS72 SLTYKDKVYLNVTTDNTSLDDFHVNGGELILIHQNPGEFCVL
             100       110       120       130   




183 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 22:11:02 2016 done: Sun Nov  6 22:11:02 2016
 Total Scan time:  1.800 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]