FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9292, 270 aa
  1>>>pF1KB9292 270 - 270 aa - 270 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.5323+/-0.000309; mu= -7.3964+/- 0.019
 mean_var=256.7997+/-52.281, 0's: 0 Z-trim(125.4): 1  B-trim: 1125 in 1/58
 Lambda= 0.080034
 statistics sampled from 49165 (49167) to 49165 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.843), E-opt: 0.2 (0.576), width:  16
 Scan time:  8.940

The best scores are:                                      opt bits E(85289)
NP_660300 (OMIM: 616762) centriole, cilia and spin ( 270) 1861 226.7 3.5e-59


>>NP_660300 (OMIM: 616762) centriole, cilia and spindle-  (270 aa)
 initn: 1861 init1: 1861 opt: 1861  Z-score: 1183.4  bits: 226.7 E(85289): 3.5e-59
Smith-Waterman score: 1861; 100.0% identity (100.0% similar) in 270 aa overlap (1-270:1-270)

               10        20        30        40        50        60
pF1KB9 MSPGSGVKSEYMKRYQEPRWEEYGPCYRELLHYRLGRRLLEQAHAPWLWDDWGPAGSSED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_660 MSPGSGVKSEYMKRYQEPRWEEYGPCYRELLHYRLGRRLLEQAHAPWLWDDWGPAGSSED
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 SASSESSGAGGPAPRCAPPSPPPPVEPATQEEAERRARGAPEEQDAEAGDAEAEDAEDAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_660 SASSESSGAGGPAPRCAPPSPPPPVEPATQEEAERRARGAPEEQDAEAGDAEAEDAEDAA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 LPALPVKDVEDKPEQQTRTRETDKSPTSTEPRQQPSALFARGNRKAVKSPQRSSSKIKEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_660 LPALPVKDVEDKPEQQTRTRETDKSPTSTEPRQQPSALFARGNRKAVKSPQRSSSKIKEN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 KHPFALYGWGEKQTDTGSQKTHNVCASAPVHEIHESALRAKNRRQVEKRKLVAQRQRAHS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_660 KHPFALYGWGEKQTDTGSQKTHNVCASAPVHEIHESALRAKNRRQVEKRKLVAQRQRAHS
              190       200       210       220       230       240

              250       260       270
pF1KB9 VDVEKNRKMKASSSENPWMTEYMRCYSARA
       ::::::::::::::::::::::::::::::
NP_660 VDVEKNRKMKASSSENPWMTEYMRCYSARA
              250       260       270




270 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 22:12:44 2016 done: Sun Nov  6 22:12:45 2016
 Total Scan time:  8.940 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]