FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9292, 270 aa
  1>>>pF1KB9292 270 - 270 aa - 270 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.8047+/-0.00077; mu= -2.7588+/- 0.047
 mean_var=249.7578+/-49.782, 0's: 0 Z-trim(117.7): 2  B-trim: 0 in 0/52
 Lambda= 0.081155
 statistics sampled from 18470 (18472) to 18470 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.839), E-opt: 0.2 (0.567), width:  16
 Scan time:  3.010

The best scores are:                                      opt bits E(32554)
CCDS1577.1 CCSAP gene_id:126731|Hs108|chr1         ( 270) 1861 229.6 1.8e-60


>>CCDS1577.1 CCSAP gene_id:126731|Hs108|chr1              (270 aa)
 initn: 1861 init1: 1861 opt: 1861  Z-score: 1199.0  bits: 229.6 E(32554): 1.8e-60
Smith-Waterman score: 1861; 100.0% identity (100.0% similar) in 270 aa overlap (1-270:1-270)

               10        20        30        40        50        60
pF1KB9 MSPGSGVKSEYMKRYQEPRWEEYGPCYRELLHYRLGRRLLEQAHAPWLWDDWGPAGSSED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 MSPGSGVKSEYMKRYQEPRWEEYGPCYRELLHYRLGRRLLEQAHAPWLWDDWGPAGSSED
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 SASSESSGAGGPAPRCAPPSPPPPVEPATQEEAERRARGAPEEQDAEAGDAEAEDAEDAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 SASSESSGAGGPAPRCAPPSPPPPVEPATQEEAERRARGAPEEQDAEAGDAEAEDAEDAA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 LPALPVKDVEDKPEQQTRTRETDKSPTSTEPRQQPSALFARGNRKAVKSPQRSSSKIKEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 LPALPVKDVEDKPEQQTRTRETDKSPTSTEPRQQPSALFARGNRKAVKSPQRSSSKIKEN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 KHPFALYGWGEKQTDTGSQKTHNVCASAPVHEIHESALRAKNRRQVEKRKLVAQRQRAHS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 KHPFALYGWGEKQTDTGSQKTHNVCASAPVHEIHESALRAKNRRQVEKRKLVAQRQRAHS
              190       200       210       220       230       240

              250       260       270
pF1KB9 VDVEKNRKMKASSSENPWMTEYMRCYSARA
       ::::::::::::::::::::::::::::::
CCDS15 VDVEKNRKMKASSSENPWMTEYMRCYSARA
              250       260       270




270 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 22:12:43 2016 done: Sun Nov  6 22:12:43 2016
 Total Scan time:  3.010 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]