FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9139, 487 aa
  1>>>pF1KB9139 487 - 487 aa - 487 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.1356+/-0.00075; mu= 15.0062+/- 0.045
 mean_var=94.4667+/-19.096, 0's: 0 Z-trim(110.9): 3  B-trim: 0 in 0/54
 Lambda= 0.131958
 statistics sampled from 11931 (11933) to 11931 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.714), E-opt: 0.2 (0.367), width:  16
 Scan time:  3.130

The best scores are:                                      opt bits E(32554)
CCDS7696.1 PTDSS2 gene_id:81490|Hs108|chr11        ( 487) 3477 672.0  4e-193
CCDS6271.1 PTDSS1 gene_id:9791|Hs108|chr8          ( 473)  844 170.7   3e-42


>>CCDS7696.1 PTDSS2 gene_id:81490|Hs108|chr11             (487 aa)
 initn: 3477 init1: 3477 opt: 3477  Z-score: 3580.7  bits: 672.0 E(32554): 4e-193
Smith-Waterman score: 3477; 100.0% identity (100.0% similar) in 487 aa overlap (1-487:1-487)

               10        20        30        40        50        60
pF1KB9 MRRGERRDAGGPRPESPVPAGRASLEEPPDGPSAGQATGPGEGRRSTESEVYDDGTNTFF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 MRRGERRDAGGPRPESPVPAGRASLEEPPDGPSAGQATGPGEGRRSTESEVYDDGTNTFF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 WRAHTLTVLFILTCTLGYVTLLEETPQDTAYNTKRGIVASILVFLCFGVTQAKDGPFSRP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 WRAHTLTVLFILTCTLGYVTLLEETPQDTAYNTKRGIVASILVFLCFGVTQAKDGPFSRP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 HPAYWRFWLCVSVVYELFLIFILFQTVQDGRQFLKYVDPKLGVPLPERDYGGNCLIYDPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 HPAYWRFWLCVSVVYELFLIFILFQTVQDGRQFLKYVDPKLGVPLPERDYGGNCLIYDPD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 NETDPFHNIWDKLDGFVPAHFLGWYLKTLMIRDWWMCMIISVMFEFLEYSLEHQLPNFSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 NETDPFHNIWDKLDGFVPAHFLGWYLKTLMIRDWWMCMIISVMFEFLEYSLEHQLPNFSE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 CWWDHWIMDVLVCNGLGIYCGMKTLEWLSLKTYKWQGLWNIPTYKGKMKRIAFQFTPYSW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 CWWDHWIMDVLVCNGLGIYCGMKTLEWLSLKTYKWQGLWNIPTYKGKMKRIAFQFTPYSW
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 VRFEWKPASSLRRWLAVCGIILVFLLAELNTFYLKFVLWMPPEHYLVLLRLVFFVNVGGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 VRFEWKPASSLRRWLAVCGIILVFLLAELNTFYLKFVLWMPPEHYLVLLRLVFFVNVGGV
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 AMREIYDFMDDPKPHKKLGPQAWLVAAITATELLIVVKYDPHTLTLSLPFYISQCWTLGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 AMREIYDFMDDPKPHKKLGPQAWLVAAITATELLIVVKYDPHTLTLSLPFYISQCWTLGS
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB9 VLALTWTVWRFFLRDITLRYKETRWQKWQNKDDQGSTVGNGDQHPLGLDEDLLGPGVAEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 VLALTWTVWRFFLRDITLRYKETRWQKWQNKDDQGSTVGNGDQHPLGLDEDLLGPGVAEG
              430       440       450       460       470       480

              
pF1KB9 EGAPTPN
       :::::::
CCDS76 EGAPTPN
              

>>CCDS6271.1 PTDSS1 gene_id:9791|Hs108|chr8               (473 aa)
 initn: 733 init1: 400 opt: 844  Z-score: 871.9  bits: 170.7 E(32554): 3e-42
Smith-Waterman score: 844; 34.4% identity (64.8% similar) in 395 aa overlap (44-429:22-404)

            20        30        40        50        60        70   
pF1KB9 PESPVPAGRASLEEPPDGPSAGQATGPGEGRRSTESEVYDDGTNTFFWRAHTLTVLFILT
                                     :  .:..: .: :  ::.: ::.:.: .  
CCDS62          MASCVGSRTLSKDDVNYKMHFRMINEQQV-EDITIDFFYRPHTITLLSFTI
                        10        20         30        40        50

            80          90       100       110       120       130 
pF1KB9 CTLGYVTLLEE--TPQDTAYNTKRGIVASILVFLCFGVTQAKDGPFSRPHPAYWRFWLCV
        .: : .. ..  .:.:   :  :::.. :. :: ..:    .:::.::::: ::. . .
CCDS62 VSLMYFAFTRDDSVPED---NIWRGILSVIFFFLIISVLAFPNGPFTRPHPALWRMVFGL
               60           70        80        90       100       

             140       150       160          170       180        
pF1KB9 SVVYELFLIFILFQTVQDGRQFLKYVDPKLGVPLPERD---YGGNCLIYDPDNETDPFHN
       ::.: :::.:.:: . .. .... ..::.:     : :   :. :: .         .. 
CCDS62 SVLYFLFLVFLLFLNFEQVKSLMYWLDPNLRYATREADVMEYAVNCHVIT-------WER
       110       120       130       140       150              160

      190       200       210       220       230       240        
pF1KB9 IWDKLDGFVPAHFLGWYLKTLMIRDWWMCMIISVMFEFLEYSLEHQLPNFSECWWDHWIM
       : ...: :. .:: :: .:.:.::.. .:  ::. .:. :  . : ::::.:::::. :.
CCDS62 IISHFDIFAFGHFWGWAMKALLIRSYGLCWTISITWELTELFFMHLLPNFAECWWDQVIL
              170       180       190       200       210       220

      250       260       270       280       290       300        
pF1KB9 DVLVCNGLGIYCGMKTLEWLSLKTYKWQGLWNIPTYKGKMKRIAFQFTPYSWVRFEW-KP
       :.:.::: ::. :: . ..: ..::.: .. .: :  ::.:: ..:::: ::.  .:  :
CCDS62 DILLCNGGGIWLGMVVCRFLEMRTYHWASFKDIHTTTGKIKRAVLQFTPASWTYVRWFDP
              230       240       250       260       270       280

       310       320       330       340       350       360       
pF1KB9 ASSLRRWLAVCGIILVFLLAELNTFYLKFVLWMPPEHYLVLLRLVFFVNVGGVAMREIYD
        ::..:  .:  ..... :.:::::.:: .. .   : :   :..:. .. . ..:. : 
CCDS62 KSSFQRVAGVYLFMIIWQLTELNTFFLKHIFVFQASHPLSWGRILFIGGITAPTVRQYYA
              290       300       310       320       330       340

       370       380       390       400       410          420    
pF1KB9 FMDDPKPHKKLGPQAWLVAAITATELLIVVKYDPHTLTLSLPFYISQ---CWTLGSVLAL
       .. : .  :..: : :. ..:   : .. .:.    .. .  .:.     : .. . : :
CCDS62 YLTDTQ-CKRVGTQCWVFGVIGFLEAIVCIKFGQDLFSKTQILYVVLWLLCVAFTTFLCL
               350       360       370       380       390         

          430       440       450       460       470       480    
pF1KB9 TWTVWRFFLRDITLRYKETRWQKWQNKDDQGSTVGNGDQHPLGLDEDLLGPGVAEGEGAP
          .:                                                       
CCDS62 YGMIWYAEHYGHREKTYSECEDGTYSPEISWHHRKGTKGSEDSPPKHAGNNESHSSRRRN
     400       410       420       430       440       450         




487 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 20:56:38 2016 done: Mon Nov  7 20:56:39 2016
 Total Scan time:  3.130 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]