FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9099, 222 aa
  1>>>pF1KB9099 222 - 222 aa - 222 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.7915+/-0.000866; mu= 16.7606+/- 0.052
 mean_var=64.7812+/-13.057, 0's: 0 Z-trim(106.2): 22  B-trim: 0 in 0/49
 Lambda= 0.159349
 statistics sampled from 8853 (8870) to 8853 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.642), E-opt: 0.2 (0.272), width:  16
 Scan time:  2.150

The best scores are:                                      opt bits E(32554)
CCDS11668.1 CACNG1 gene_id:786|Hs108|chr17         ( 222) 1518 357.5 3.9e-99
CCDS12870.1 CACNG6 gene_id:59285|Hs108|chr19       ( 260)  559 137.1   1e-32
CCDS12871.1 CACNG6 gene_id:59285|Hs108|chr19       ( 214)  302 77.9 5.5e-15


>>CCDS11668.1 CACNG1 gene_id:786|Hs108|chr17              (222 aa)
 initn: 1518 init1: 1518 opt: 1518  Z-score: 1893.2  bits: 357.5 E(32554): 3.9e-99
Smith-Waterman score: 1518; 100.0% identity (100.0% similar) in 222 aa overlap (1-222:1-222)

               10        20        30        40        50        60
pF1KB9 MSQTKMLKVRVTLFCILAGIVLAMTAVVTDHWAVLSPHMEHHNTTCEAAHFGLWRICTKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MSQTKMLKVRVTLFCILAGIVLAMTAVVTDHWAVLSPHMEHHNTTCEAAHFGLWRICTKR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 IPMDDSKTCGPITLPGEKNCSYFRHFNPGESSEIFEFTTQKEYSISAAAIAIFSLGFIIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 IPMDDSKTCGPITLPGEKNCSYFRHFNPGESSEIFEFTTQKEYSISAAAIAIFSLGFIIL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 GSLCVLLSLGKKRDYLLRPASMFYAFAGLCILVSVEVMRQSVKRMIDSEDTVWIEYYYSW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 GSLCVLLSLGKKRDYLLRPASMFYAFAGLCILVSVEVMRQSVKRMIDSEDTVWIEYYYSW
              130       140       150       160       170       180

              190       200       210       220  
pF1KB9 SFACACAAFILLFLGGLALLLFSLPRMPRNPWESCMDAEPEH
       ::::::::::::::::::::::::::::::::::::::::::
CCDS11 SFACACAAFILLFLGGLALLLFSLPRMPRNPWESCMDAEPEH
              190       200       210       220  

>>CCDS12870.1 CACNG6 gene_id:59285|Hs108|chr19            (260 aa)
 initn: 584 init1: 328 opt: 559  Z-score: 700.7  bits: 137.1 E(32554): 1e-32
Smith-Waterman score: 559; 39.7% identity (72.1% similar) in 219 aa overlap (8-215:38-252)

                                      10        20        30       
pF1KB9                        MSQTKMLKVRVTLFCILAGIVLAMTAVVTDHWAVLSP
                                     ::...:.   .: .::. .: :. :. :. 
CCDS12 LQEENRRRGAAGRRRAHGQGRSGLTPEREGKVKLALLLAAVGATLAVLSVGTEFWVELNT
        10        20        30        40        50        60       

        40        50        60             70        80        90  
pF1KB9 HMEHHNTTCEAAHFGLWRICTKR-----IPMDDSKTCGPITLPGEKNCSYFRHFNPGESS
       .  . ...:::::.:::. ::::     .:.:   ::::  :::: ::.::. :. ::..
CCDS12 YKANGSAVCEAAHLGLWKACTKRLWQADVPVD-RDTCGPAELPGEANCTYFKFFTTGENA
        70        80        90        100       110       120      

            100       110       120       130       140       150  
pF1KB9 EIFEFTTQKEYSISAAAIAIFSLGFIILGSLCVLLSLGKKRDYLLRPASMFYAFAGLCIL
       .::. ::.:: ...::.::...:. . :: ::... :.:  ..::: ... ....:: .:
CCDS12 RIFQRTTKKEVNLAAAVIAVLGLAVMALGCLCIIMVLSKGAEFLLRVGAVCFGLSGLLLL
        130       140       150       160       170       180      

            160            170       180       190       200       
pF1KB9 VSVEVMRQSVKRMI-----DSEDTVWIEYYYSWSFACACAAFILLFLGGLALLLFSLPRM
       ::.::.:.::. ..     .   .  . : ::::..:. .: ..:.::.  .::..::  
CCDS12 VSLEVFRHSVRALLQRVSPEPPPAPRLTYEYSWSLGCGVGAGLILLLGAGCFLLLTLPSW
        190       200       210       220       230       240      

       210        220   
pF1KB9 PRNPWES-CMDAEPEH 
       :   : : :        
CCDS12 P---WGSLCPKRGHRAT
           250       260

>>CCDS12871.1 CACNG6 gene_id:59285|Hs108|chr19            (214 aa)
 initn: 467 init1: 161 opt: 302  Z-score: 382.6  bits: 77.9 E(32554): 5.5e-15
Smith-Waterman score: 348; 32.9% identity (55.3% similar) in 219 aa overlap (8-215:38-206)

                                      10        20        30       
pF1KB9                        MSQTKMLKVRVTLFCILAGIVLAMTAVVTDHWAVLSP
                                     ::...:.   .: .::. .: :. :. :. 
CCDS12 LQEENRRRGAAGRRRAHGQGRSGLTPEREGKVKLALLLAAVGATLAVLSVGTEFWVELNT
        10        20        30        40        50        60       

        40        50        60             70        80        90  
pF1KB9 HMEHHNTTCEAAHFGLWRICTKR-----IPMDDSKTCGPITLPGEKNCSYFRHFNPGESS
       .  . ...:::::.:::. ::::     .:.:   ::::  :::: ::.::. :. ::..
CCDS12 YKANGSAVCEAAHLGLWKACTKRLWQADVPVD-RDTCGPAELPGEANCTYFKFFTTGENA
        70        80        90        100       110       120      

            100       110       120       130       140       150  
pF1KB9 EIFEFTTQKEYSISAAAIAIFSLGFIILGSLCVLLSLGKKRDYLLRPASMFYAFAGLCIL
       .::. ::.:                                              :: .:
CCDS12 RIFQRTTKK----------------------------------------------GLLLL
        130                                                     140

            160            170       180       190       200       
pF1KB9 VSVEVMRQSVKRMI-----DSEDTVWIEYYYSWSFACACAAFILLFLGGLALLLFSLPRM
       ::.::.:.::. ..     .   .  . : ::::..:. .: ..:.::.  .::..::  
CCDS12 VSLEVFRHSVRALLQRVSPEPPPAPRLTYEYSWSLGCGVGAGLILLLGAGCFLLLTLPSW
              150       160       170       180       190       200

       210        220   
pF1KB9 PRNPWES-CMDAEPEH 
       :   : : :        
CCDS12 P---WGSLCPKRGHRAT
                 210    




222 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 19:20:14 2016 done: Sat Nov  5 19:20:14 2016
 Total Scan time:  2.150 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]