FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8981, 377 aa
  1>>>pF1KB8981 377 - 377 aa - 377 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 18.6310+/-0.00136; mu= -42.0240+/- 0.083
 mean_var=876.4782+/-182.247, 0's: 0 Z-trim(116.3): 52  B-trim: 0 in 0/53
 Lambda= 0.043322
 statistics sampled from 16836 (16872) to 16836 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.765), E-opt: 0.2 (0.518), width:  16
 Scan time:  3.560

The best scores are:                                      opt bits E(32554)
CCDS3541.1 MUC7 gene_id:4589|Hs108|chr4            ( 377) 2534 173.0 3.9e-43


>>CCDS3541.1 MUC7 gene_id:4589|Hs108|chr4                 (377 aa)
 initn: 2534 init1: 2534 opt: 2534  Z-score: 887.9  bits: 173.0 E(32554): 3.9e-43
Smith-Waterman score: 2534; 99.7% identity (99.7% similar) in 377 aa overlap (1-377:1-377)

               10        20        30        40        50        60
pF1KB8 MKTLPLFVCICALSACFSFSEGRERDHELRHRRHHHQSPKSHFELPHYPGLLAHQKPFIR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 MKTLPLFVCICALSACFSFSEGRERDHELRHRRHHHQSPKSHFELPHYPGLLAHQKPFIR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 KSYKCLHKRCRPKLPPSPNNPPKFPNPHQPPKHPDKNSSVVNPTLVATTQIPSVTFPSAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 KSYKCLHKRCRPKLPPSPNNPPKFPNPHQPPKHPDKNSSVVNPTLVATTQIPSVTFPSAS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 TKITTLPNVTFLPQNATTISSRENVNTSSSVATLAPVNSPAPQDTTAAPPTPSATTPAPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 TKITTLPNVTFLPQNATTISSRENVNTSSSVATLAPVNSPAPQDTTAAPPTPSATTPAPP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 SSSAPPETTAAPPTPSATTQAPPSSSAPPETTAAPPTPPATTPAPPSSSAPPETTAAPPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 SSSAPPETTAAPPTPSATTQAPPSSSAPPETTAAPPTPPATTPAPPSSSAPPETTAAPPT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 PSATTPAPLSSSAPPETTAVPPTPSATTLDPSSASAPPETTAAPPTPSATTPAPPSSPAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 PSATTPAPLSSSAPPETTAVPPTPSATTLDPSSASAPPETTAAPPTPSATTPAPPSSPAP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 QETTAAPITTPNSSPTTLAPDTSETSAAPTHQTITSVTTQTTTTKQPTSAPGQNKISRFL
       ::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::
CCDS35 QETTAAPITTPNSSPTTLAPDTSETSAAPTHQTTTSVTTQTTTTKQPTSAPGQNKISRFL
              310       320       330       340       350       360

              370       
pF1KB8 LYMKNLLNRIIDDMVEQ
       :::::::::::::::::
CCDS35 LYMKNLLNRIIDDMVEQ
              370       




377 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 22:39:11 2016 done: Sun Nov  6 22:39:12 2016
 Total Scan time:  3.560 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]