FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8975, 371 aa
  1>>>pF1KB8975 371 - 371 aa - 371 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.8997+/-0.000835; mu= 7.7510+/- 0.051
 mean_var=221.8076+/-45.762, 0's: 0 Z-trim(114.8): 165  B-trim: 132 in 1/52
 Lambda= 0.086116
 statistics sampled from 15132 (15313) to 15132 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.779), E-opt: 0.2 (0.47), width:  16
 Scan time:  2.470

The best scores are:                                      opt bits E(32554)
CCDS9659.1 1 gene_id:7080|Hs108|chr14              ( 371) 2542 328.0   8e-90
CCDS41945.1 1 gene_id:7080|Hs108|chr14             ( 401) 2542 328.1 8.4e-90
CCDS42855.1 4 gene_id:644524|Hs108|chr20           ( 354)  882 121.8 9.4e-28


>>CCDS9659.1 1 gene_id:7080|Hs108|chr14                   (371 aa)
 initn: 2542 init1: 2542 opt: 2542  Z-score: 1726.1  bits: 328.0 E(32554): 8e-90
Smith-Waterman score: 2542; 100.0% identity (100.0% similar) in 371 aa overlap (1-371:1-371)

               10        20        30        40        50        60
pF1KB8 MSMSPKHTTPFSVSDILSPLEESYKKVGMEGGGLGAPLAAYRQGQAAPPTAAMQQHAVGH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 MSMSPKHTTPFSVSDILSPLEESYKKVGMEGGGLGAPLAAYRQGQAAPPTAAMQQHAVGH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 HGAVTAAYHMTAAGVPQLSHSAVGGYCNGNLGNMSELPPYQDTMRNSASGPGWYGANPDP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 HGAVTAAYHMTAAGVPQLSHSAVGGYCNGNLGNMSELPPYQDTMRNSASGPGWYGANPDP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 RFPAISRFMGPASGMNMSGMGGLGSLGDVSKNMAPLPSAPRRKRRVLFSQAQVYELERRF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 RFPAISRFMGPASGMNMSGMGGLGSLGDVSKNMAPLPSAPRRKRRVLFSQAQVYELERRF
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 KQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKDKAAQQQLQQDSGGGGGGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 KQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKDKAAQQQLQQDSGGGGGGG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 GTGCPQQQQAQQQSPRRVAVPVLVKDGKPCQAGAPAPGAASLQGHAQQQAQHQAQAAQAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 GTGCPQQQQAQQQSPRRVAVPVLVKDGKPCQAGAPAPGAASLQGHAQQQAQHQAQAAQAA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 AAAISVGSGGAGLGAHPGHQPGSAGQSPDLAHHAASPAALQGQVSSLSHLNSSGSDYGTM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 AAAISVGSGGAGLGAHPGHQPGSAGQSPDLAHHAASPAALQGQVSSLSHLNSSGSDYGTM
              310       320       330       340       350       360

              370 
pF1KB8 SCSTLLYGRTW
       :::::::::::
CCDS96 SCSTLLYGRTW
              370 

>>CCDS41945.1 1 gene_id:7080|Hs108|chr14                  (401 aa)
 initn: 2542 init1: 2542 opt: 2542  Z-score: 1725.7  bits: 328.1 E(32554): 8.4e-90
Smith-Waterman score: 2542; 100.0% identity (100.0% similar) in 371 aa overlap (1-371:31-401)

                                             10        20        30
pF1KB8                               MSMSPKHTTPFSVSDILSPLEESYKKVGME
                                     ::::::::::::::::::::::::::::::
CCDS41 MWSGGSGKARGWEAAAGGRSSPGRLSRRRIMSMSPKHTTPFSVSDILSPLEESYKKVGME
               10        20        30        40        50        60

               40        50        60        70        80        90
pF1KB8 GGGLGAPLAAYRQGQAAPPTAAMQQHAVGHHGAVTAAYHMTAAGVPQLSHSAVGGYCNGN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 GGGLGAPLAAYRQGQAAPPTAAMQQHAVGHHGAVTAAYHMTAAGVPQLSHSAVGGYCNGN
               70        80        90       100       110       120

              100       110       120       130       140       150
pF1KB8 LGNMSELPPYQDTMRNSASGPGWYGANPDPRFPAISRFMGPASGMNMSGMGGLGSLGDVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 LGNMSELPPYQDTMRNSASGPGWYGANPDPRFPAISRFMGPASGMNMSGMGGLGSLGDVS
              130       140       150       160       170       180

              160       170       180       190       200       210
pF1KB8 KNMAPLPSAPRRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 KNMAPLPSAPRRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQ
              190       200       210       220       230       240

              220       230       240       250       260       270
pF1KB8 NHRYKMKRQAKDKAAQQQLQQDSGGGGGGGGTGCPQQQQAQQQSPRRVAVPVLVKDGKPC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 NHRYKMKRQAKDKAAQQQLQQDSGGGGGGGGTGCPQQQQAQQQSPRRVAVPVLVKDGKPC
              250       260       270       280       290       300

              280       290       300       310       320       330
pF1KB8 QAGAPAPGAASLQGHAQQQAQHQAQAAQAAAAAISVGSGGAGLGAHPGHQPGSAGQSPDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 QAGAPAPGAASLQGHAQQQAQHQAQAAQAAAAAISVGSGGAGLGAHPGHQPGSAGQSPDL
              310       320       330       340       350       360

              340       350       360       370 
pF1KB8 AHHAASPAALQGQVSSLSHLNSSGSDYGTMSCSTLLYGRTW
       :::::::::::::::::::::::::::::::::::::::::
CCDS41 AHHAASPAALQGQVSSLSHLNSSGSDYGTMSCSTLLYGRTW
              370       380       390       400 

>>CCDS42855.1 4 gene_id:644524|Hs108|chr20                (354 aa)
 initn: 953 init1: 470 opt: 882  Z-score: 611.8  bits: 121.8 E(32554): 9.4e-28
Smith-Waterman score: 1207; 54.0% identity (69.3% similar) in 404 aa overlap (1-371:1-354)

               10        20          30          40                
pF1KB8 MSMSPKHTTPFSVSDILSPLEESYKKVG--MEGG--GLGAPLAAYRQGQAAPP-------
       ::.::::::::::::::::.::.::: .  :.:.  ::::::.:    .: ::       
CCDS42 MSLSPKHTTPFSVSDILSPIEETYKKFSGAMDGAPPGLGAPLGAAAAYRAPPPGPSSQAA
               10        20        30        40        50        60

       50          60                   70        80        90     
pF1KB8 -TAAMQ-QHAV-GHHGAVTAA-----------YHMTAAGVPQLSHSAVGGYCNGNLGNMS
        .:.:: .::. ::..:..::           :::   :: :. :.:.:.::::.::::.
CCDS42 TVAGMQPSHAMAGHNAAAAAAAAAAAAAAAATYHMPP-GVSQFPHGAMGSYCNGGLGNMG
               70        80        90        100       110         

         100       110       120       130       140       150     
pF1KB8 ELPPYQDTMRNSASGPGWYGANPDPRFPAISRFMGPASGMNMSGMGGLGSLGDVSKNMAP
       ::: : : ::..:.  ::::::::::. .:::::::..:.:..:::.: ...:..:...:
CCDS42 ELPAYTDGMRGGAA-TGWYGANPDPRYSSISRFMGPSAGVNVAGMGSLTGIADAAKSLGP
     120       130        140       150       160       170        

              160       170       180       190       200       210
pF1KB8 L-----PSAPRRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQ
       :      .::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LHAAAAAAAPRRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQ
      180       190       200       210       220       230        

              220       230       240       250       260       270
pF1KB8 NHRYKMKRQAKDKAAQQQLQQDSGGGGGGGGTGCPQQQQAQQQSPRRVAVPVLVKDGKPC
       ::::::::::::::::: :::.       :: : :        :::::::::::::::::
CCDS42 NHRYKMKRQAKDKAAQQ-LQQE-------GGLGPPPPP---PPSPRRVAVPVLVKDGKPC
      240       250               260          270       280       

                280       290       300       310       320        
pF1KB8 QAGA--PAPGAASLQGHAQQQAQHQAQAAQAAAAAISVGSGGAGLGAHPGHQPGSAGQSP
       : ::  :.:: :                                     : :: .   .:
CCDS42 QNGASTPTPGQA-------------------------------------GPQPPAPTPAP
       290                                            300       310

      330       340       350        360       370 
pF1KB8 DLAHHAASPAALQGQVSSLSHLNSSGSDY-GTMSCSTLLYGRTW
       .: . . :: ::.:  ..:. :......: : .  ..:::::::
CCDS42 ELEELSPSPPALHGPGGGLAALDAAAGEYSGGVLGANLLYGRTW
              320       330       340       350    




371 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 21:26:10 2016 done: Sun Nov  6 21:26:10 2016
 Total Scan time:  2.470 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]