FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8968, 357 aa
  1>>>pF1KB8968 357 - 357 aa - 357 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.4114+/-0.000914; mu= -3.2746+/- 0.056
 mean_var=358.2231+/-72.469, 0's: 0 Z-trim(117.4): 130  B-trim: 0 in 0/53
 Lambda= 0.067764
 statistics sampled from 17979 (18113) to 17979 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.815), E-opt: 0.2 (0.556), width:  16
 Scan time:  3.430

The best scores are:                                      opt bits E(32554)
CCDS41575.1 HMX3 gene_id:340784|Hs108|chr10        ( 357) 2403 247.9 9.8e-66
CCDS47018.1 HMX1 gene_id:3166|Hs108|chr4           ( 348)  558 67.5 1.9e-11


>>CCDS41575.1 HMX3 gene_id:340784|Hs108|chr10             (357 aa)
 initn: 2403 init1: 2403 opt: 2403  Z-score: 1293.6  bits: 247.9 E(32554): 9.8e-66
Smith-Waterman score: 2403; 100.0% identity (100.0% similar) in 357 aa overlap (1-357:1-357)

               10        20        30        40        50        60
pF1KB8 MPEPGPDAAGTASAQPQPPPPPPPAPKESPFSIKNLLNGDHHRPPPKPQPPPRTLFAPAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MPEPGPDAAGTASAQPQPPPPPPPAPKESPFSIKNLLNGDHHRPPPKPQPPPRTLFAPAS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 AAAAAAAAAAAAAKGALEGAAGFALSQVGDLAFPRFEIPAQRFALPAHYLERSPAWWYPY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 AAAAAAAAAAAAAKGALEGAAGFALSQVGDLAFPRFEIPAQRFALPAHYLERSPAWWYPY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 TLTPAGGHLPRPEASEKALLRDSSPASGTDRDSPEPLLKADPDHKELDSKSPDEIILEES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 TLTPAGGHLPRPEASEKALLRDSSPASGTDRDSPEPLLKADPDHKELDSKSPDEIILEES
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 DSEESKKEGEAAPGAAGASVGAAAATPGAEDWKKGAESPEKKPACRKKKTRTVFSRSQVF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 DSEESKKEGEAAPGAAGASVGAAAATPGAEDWKKGAESPEKKPACRKKKTRTVFSRSQVF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 QLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAAELEAANLSHAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 QLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAAELEAANLSHAAA
              250       260       270       280       290       300

              310       320       330       340       350       
pF1KB8 QRIVRVPILYHENSAAEGAAAAAAGAPVPVSQPLLTFPHPVYYSHPVVSSVPLLRPV
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 QRIVRVPILYHENSAAEGAAAAAAGAPVPVSQPLLTFPHPVYYSHPVVSSVPLLRPV
              310       320       330       340       350       

>>CCDS47018.1 HMX1 gene_id:3166|Hs108|chr4                (348 aa)
 initn: 612 init1: 535 opt: 558  Z-score: 318.9  bits: 67.5 E(32554): 1.9e-11
Smith-Waterman score: 609; 47.4% identity (62.9% similar) in 251 aa overlap (115-355:114-341)

           90       100       110       120       130       140    
pF1KB8 LSQVGDLAFPRFEIPAQRFALPAHYLERSPAWWYPYTLTPAGGHLPRPEASEKALLRDSS
                                     : ::: .    :: :  :..:.    ::: 
CCDS47 RALLGPGALGLGPRPPPGPGPPFALGCGGAARWYPRAHGGYGGGLS-PDTSD----RDS-
            90       100       110       120        130            

          150       160       170       180       190       200    
pF1KB8 PASGTDRDSPEPLLKADPDHKELDSKSPDEIILEESDSEESKKEGEAAPGAAGASVGAAA
       : .: .    :      :    .. .. .      . . :  .:   .:.::: . :...
CCDS47 PETGEEMGRAEGAWPRGPGPGAVQREAAELAARGPAAGTEEASELAEVPAAAGETRGGVG
       140       150       160       170       180       190       

          210       220       230       240       250       260    
pF1KB8 ATPGAEDWKKGAESPEKKPACRKKKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASL
       .  :                 ::::::::::::::::::::::.::::::.:::::::::
CCDS47 VGGG-----------------RKKKTRTVFSRSQVFQLESTFDLKRYLSSAERAGLAASL
       200                        210       220       230       240

          270       280       290       300       310       320    
pF1KB8 HLTETQVKIWFQNRRNKWKRQLAAELEAANLSHAAAQRIVRVPILYHENSAAEGAAAAAA
       .::::::::::::::::::::::::::::.::  .:::.::::.::::.  : .::.  :
CCDS47 QLTETQVKIWFQNRRNKWKRQLAAELEAASLSPPGAQRLVRVPVLYHESPPAAAAAGPPA
              250       260       270       280       290       300

          330              340          350            
pF1KB8 GAPVPVSQ-------PLLTFPHPVYY---SHPVVSSVPLLRPV     
         : :..        ::: :   . :   . :...:::.::       
CCDS47 TLPFPLAPAAPAPPPPLLGFSGALAYPLAAFPAAASVPFLRAQMPGLV
              310       320       330       340        




357 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 04:24:35 2016 done: Tue Nov  8 04:24:36 2016
 Total Scan time:  3.430 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]