Result of FASTA (omim) for
pFN21AB8967
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8967, 356 aa
1>>>pF1KB8967 356 - 356 aa - 356 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.7190+/-0.000403; mu= 19.6564+/- 0.025
mean_var=92.9128+/-23.282, 0's: 0 Z-trim(110.5): 432 B-trim: 1018 in 1/49
Lambda= 0.133057
statistics sampled from 18351 (18860) to 18351 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.585), E-opt: 0.2 (0.221), width: 16
Scan time: 7.550
The best scores are: opt bits E(85289)
NP_001124382 (OMIM: 608379) C-C chemokine receptor ( 356) 2372 466.2 5e-131
NP_003956 (OMIM: 608379) C-C chemokine receptor-li ( 344) 2297 451.8 1e-126
XP_011532510 (OMIM: 608379) PREDICTED: C-C chemoki ( 344) 2297 451.8 1e-126
XP_011532511 (OMIM: 608379) PREDICTED: C-C chemoki ( 344) 2297 451.8 1e-126
XP_016862925 (OMIM: 608379) PREDICTED: C-C chemoki ( 344) 2297 451.8 1e-126
NP_000570 (OMIM: 601373,609532,610379,612522) C-C ( 352) 870 177.9 3.1e-44
NP_001093638 (OMIM: 601373,609532,610379,612522) C ( 352) 870 177.9 3.1e-44
NP_001286 (OMIM: 601159) C-C chemokine receptor ty ( 355) 861 176.1 1e-43
NP_847899 (OMIM: 601268) C-C chemokine receptor ty ( 355) 849 173.8 5e-43
XP_011531637 (OMIM: 601268) PREDICTED: C-C chemoki ( 355) 849 173.8 5e-43
XP_006713023 (OMIM: 601268) PREDICTED: C-C chemoki ( 355) 849 173.8 5e-43
NP_001828 (OMIM: 601268) C-C chemokine receptor ty ( 355) 849 173.8 5e-43
NP_001158152 (OMIM: 601268) C-C chemokine receptor ( 373) 849 173.9 5.2e-43
NP_847898 (OMIM: 601268) C-C chemokine receptor ty ( 376) 849 173.9 5.2e-43
XP_016861174 (OMIM: 601268) PREDICTED: C-C chemoki ( 410) 849 173.9 5.5e-43
XP_016861175 (OMIM: 601268) PREDICTED: C-C chemoki ( 410) 849 173.9 5.5e-43
XP_011532371 (OMIM: 601267) PREDICTED: C-C chemoki ( 360) 837 171.5 2.5e-42
NP_001116868 (OMIM: 601267) C-C chemokine receptor ( 360) 837 171.5 2.5e-42
NP_001116513 (OMIM: 601267) C-C chemokine receptor ( 374) 830 170.2 6.5e-42
XP_016861176 (OMIM: 604836) PREDICTED: C-C chemoki ( 360) 692 143.7 6e-34
NP_005499 (OMIM: 604836) C-C chemokine receptor ty ( 360) 692 143.7 6e-34
NP_005192 (OMIM: 601834) C-C chemokine receptor ty ( 355) 635 132.8 1.2e-30
NP_001164645 (OMIM: 601470,607339,609423,613784) C ( 387) 580 122.2 1.9e-27
NP_001328 (OMIM: 601470,607339,609423,613784) CX3C ( 355) 577 121.6 2.6e-27
NP_001164643 (OMIM: 601470,607339,609423,613784) C ( 355) 577 121.6 2.6e-27
NP_001164642 (OMIM: 601470,607339,609423,613784) C ( 355) 577 121.6 2.6e-27
NP_001287 (OMIM: 602648) atypical chemokine recept ( 384) 558 118.0 3.5e-26
XP_011531593 (OMIM: 605163) PREDICTED: C-X-C chemo ( 342) 476 102.2 1.8e-21
NP_006555 (OMIM: 605163) C-X-C chemokine receptor ( 342) 476 102.2 1.8e-21
XP_011531592 (OMIM: 605163) PREDICTED: C-X-C chemo ( 342) 476 102.2 1.8e-21
XP_005264866 (OMIM: 605163) PREDICTED: C-X-C chemo ( 342) 476 102.2 1.8e-21
NP_003458 (OMIM: 162643,193670) C-X-C chemokine re ( 352) 458 98.8 2e-20
NP_001008540 (OMIM: 162643,193670) C-X-C chemokine ( 356) 453 97.8 3.9e-20
NP_001288647 (OMIM: 600242) C-C chemokine receptor ( 372) 453 97.8 4e-20
NP_001288646 (OMIM: 600242) C-C chemokine receptor ( 372) 453 97.8 4e-20
NP_001288645 (OMIM: 600242) C-C chemokine receptor ( 372) 453 97.8 4e-20
NP_001829 (OMIM: 600242) C-C chemokine receptor ty ( 378) 453 97.9 4e-20
NP_006632 (OMIM: 604738) C-C chemokine receptor ty ( 357) 449 97.1 6.6e-20
NP_001243298 (OMIM: 604738) C-C chemokine receptor ( 357) 449 97.1 6.6e-20
NP_112477 (OMIM: 604738) C-C chemokine receptor ty ( 369) 449 97.1 6.7e-20
XP_011531614 (OMIM: 604738) PREDICTED: C-C chemoki ( 369) 449 97.1 6.7e-20
NP_057641 (OMIM: 606065) atypical chemokine recept ( 350) 446 96.5 9.7e-20
NP_848540 (OMIM: 606065) atypical chemokine recept ( 350) 446 96.5 9.7e-20
NP_113597 (OMIM: 601835) C-C chemokine receptor ty ( 374) 433 94.0 5.7e-19
NP_004358 (OMIM: 601835) C-C chemokine receptor ty ( 374) 433 94.0 5.7e-19
NP_000625 (OMIM: 146929,609423) C-X-C chemokine re ( 350) 422 91.9 2.4e-18
XP_005246587 (OMIM: 146928) PREDICTED: C-X-C chemo ( 360) 416 90.7 5.3e-18
XP_016859481 (OMIM: 146928) PREDICTED: C-X-C chemo ( 360) 416 90.7 5.3e-18
NP_001548 (OMIM: 146928) C-X-C chemokine receptor ( 360) 416 90.7 5.3e-18
NP_001161770 (OMIM: 146928) C-X-C chemokine recept ( 360) 416 90.7 5.3e-18
>>NP_001124382 (OMIM: 608379) C-C chemokine receptor-lik (356 aa)
initn: 2372 init1: 2372 opt: 2372 Z-score: 2473.4 bits: 466.2 E(85289): 5e-131
Smith-Waterman score: 2372; 99.7% identity (100.0% similar) in 356 aa overlap (1-356:1-356)
10 20 30 40 50 60
pF1KB8 MIYTRFLKGSLKMANYTLAPEDEYDVLIEGELESDEAEQCDKYDAQALSAQLVPSLCSAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MIYTRFLKGSLKMANYTLAPEDEYDVLIEGELESDEAEQCDKYDAQALSAQLVPSLCSAV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 FVIGVLDNLLVVLILVKYKGLKRVENIYLLNLAVSNLCFLLTLPFWAHAGGDPMCKILIG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FVIGVLDNLLVVLILVKYKGLKRVENIYLLNLAVSNLCFLLTLPFWAHAGGDPMCKILIG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 LYFVGLYSETFFNCLLTVQRYLVFLHKGNFFSARRRVPCGIITSVLAWVTAILATLPEYV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:
NP_001 LYFVGLYSETFFNCLLTVQRYLVFLHKGNFFSARRRVPCGIITSVLAWVTAILATLPEFV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 VYKPQMEDQKYKCAFSRTPFLPADETFWKHFLTLKMNISVLVLPLFIFTFLYVQMRKTLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VYKPQMEDQKYKCAFSRTPFLPADETFWKHFLTLKMNISVLVLPLFIFTFLYVQMRKTLR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 FREQRYSLFKLVFAIMVVFLLMWAPYNIAFFLSTFKEHFSLSDCKSSYNLDKSVHITKLI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FREQRYSLFKLVFAIMVVFLLMWAPYNIAFFLSTFKEHFSLSDCKSSYNLDKSVHITKLI
250 260 270 280 290 300
310 320 330 340 350
pF1KB8 ATTHCCINPLLYAFLDGTFSKYLCRCFHLRSNTPLQPRGQSAQGTSREEPDHSTEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ATTHCCINPLLYAFLDGTFSKYLCRCFHLRSNTPLQPRGQSAQGTSREEPDHSTEV
310 320 330 340 350
>>NP_003956 (OMIM: 608379) C-C chemokine receptor-like 2 (344 aa)
initn: 2297 init1: 2297 opt: 2297 Z-score: 2395.8 bits: 451.8 E(85289): 1e-126
Smith-Waterman score: 2297; 99.7% identity (100.0% similar) in 344 aa overlap (13-356:1-344)
10 20 30 40 50 60
pF1KB8 MIYTRFLKGSLKMANYTLAPEDEYDVLIEGELESDEAEQCDKYDAQALSAQLVPSLCSAV
::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MANYTLAPEDEYDVLIEGELESDEAEQCDKYDAQALSAQLVPSLCSAV
10 20 30 40
70 80 90 100 110 120
pF1KB8 FVIGVLDNLLVVLILVKYKGLKRVENIYLLNLAVSNLCFLLTLPFWAHAGGDPMCKILIG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 FVIGVLDNLLVVLILVKYKGLKRVENIYLLNLAVSNLCFLLTLPFWAHAGGDPMCKILIG
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB8 LYFVGLYSETFFNCLLTVQRYLVFLHKGNFFSARRRVPCGIITSVLAWVTAILATLPEYV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:
NP_003 LYFVGLYSETFFNCLLTVQRYLVFLHKGNFFSARRRVPCGIITSVLAWVTAILATLPEFV
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB8 VYKPQMEDQKYKCAFSRTPFLPADETFWKHFLTLKMNISVLVLPLFIFTFLYVQMRKTLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 VYKPQMEDQKYKCAFSRTPFLPADETFWKHFLTLKMNISVLVLPLFIFTFLYVQMRKTLR
170 180 190 200 210 220
250 260 270 280 290 300
pF1KB8 FREQRYSLFKLVFAIMVVFLLMWAPYNIAFFLSTFKEHFSLSDCKSSYNLDKSVHITKLI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 FREQRYSLFKLVFAIMVVFLLMWAPYNIAFFLSTFKEHFSLSDCKSSYNLDKSVHITKLI
230 240 250 260 270 280
310 320 330 340 350
pF1KB8 ATTHCCINPLLYAFLDGTFSKYLCRCFHLRSNTPLQPRGQSAQGTSREEPDHSTEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 ATTHCCINPLLYAFLDGTFSKYLCRCFHLRSNTPLQPRGQSAQGTSREEPDHSTEV
290 300 310 320 330 340
>>XP_011532510 (OMIM: 608379) PREDICTED: C-C chemokine r (344 aa)
initn: 2297 init1: 2297 opt: 2297 Z-score: 2395.8 bits: 451.8 E(85289): 1e-126
Smith-Waterman score: 2297; 99.7% identity (100.0% similar) in 344 aa overlap (13-356:1-344)
10 20 30 40 50 60
pF1KB8 MIYTRFLKGSLKMANYTLAPEDEYDVLIEGELESDEAEQCDKYDAQALSAQLVPSLCSAV
::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MANYTLAPEDEYDVLIEGELESDEAEQCDKYDAQALSAQLVPSLCSAV
10 20 30 40
70 80 90 100 110 120
pF1KB8 FVIGVLDNLLVVLILVKYKGLKRVENIYLLNLAVSNLCFLLTLPFWAHAGGDPMCKILIG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FVIGVLDNLLVVLILVKYKGLKRVENIYLLNLAVSNLCFLLTLPFWAHAGGDPMCKILIG
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB8 LYFVGLYSETFFNCLLTVQRYLVFLHKGNFFSARRRVPCGIITSVLAWVTAILATLPEYV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:
XP_011 LYFVGLYSETFFNCLLTVQRYLVFLHKGNFFSARRRVPCGIITSVLAWVTAILATLPEFV
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB8 VYKPQMEDQKYKCAFSRTPFLPADETFWKHFLTLKMNISVLVLPLFIFTFLYVQMRKTLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VYKPQMEDQKYKCAFSRTPFLPADETFWKHFLTLKMNISVLVLPLFIFTFLYVQMRKTLR
170 180 190 200 210 220
250 260 270 280 290 300
pF1KB8 FREQRYSLFKLVFAIMVVFLLMWAPYNIAFFLSTFKEHFSLSDCKSSYNLDKSVHITKLI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FREQRYSLFKLVFAIMVVFLLMWAPYNIAFFLSTFKEHFSLSDCKSSYNLDKSVHITKLI
230 240 250 260 270 280
310 320 330 340 350
pF1KB8 ATTHCCINPLLYAFLDGTFSKYLCRCFHLRSNTPLQPRGQSAQGTSREEPDHSTEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ATTHCCINPLLYAFLDGTFSKYLCRCFHLRSNTPLQPRGQSAQGTSREEPDHSTEV
290 300 310 320 330 340
>>XP_011532511 (OMIM: 608379) PREDICTED: C-C chemokine r (344 aa)
initn: 2297 init1: 2297 opt: 2297 Z-score: 2395.8 bits: 451.8 E(85289): 1e-126
Smith-Waterman score: 2297; 99.7% identity (100.0% similar) in 344 aa overlap (13-356:1-344)
10 20 30 40 50 60
pF1KB8 MIYTRFLKGSLKMANYTLAPEDEYDVLIEGELESDEAEQCDKYDAQALSAQLVPSLCSAV
::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MANYTLAPEDEYDVLIEGELESDEAEQCDKYDAQALSAQLVPSLCSAV
10 20 30 40
70 80 90 100 110 120
pF1KB8 FVIGVLDNLLVVLILVKYKGLKRVENIYLLNLAVSNLCFLLTLPFWAHAGGDPMCKILIG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FVIGVLDNLLVVLILVKYKGLKRVENIYLLNLAVSNLCFLLTLPFWAHAGGDPMCKILIG
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB8 LYFVGLYSETFFNCLLTVQRYLVFLHKGNFFSARRRVPCGIITSVLAWVTAILATLPEYV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:
XP_011 LYFVGLYSETFFNCLLTVQRYLVFLHKGNFFSARRRVPCGIITSVLAWVTAILATLPEFV
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB8 VYKPQMEDQKYKCAFSRTPFLPADETFWKHFLTLKMNISVLVLPLFIFTFLYVQMRKTLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VYKPQMEDQKYKCAFSRTPFLPADETFWKHFLTLKMNISVLVLPLFIFTFLYVQMRKTLR
170 180 190 200 210 220
250 260 270 280 290 300
pF1KB8 FREQRYSLFKLVFAIMVVFLLMWAPYNIAFFLSTFKEHFSLSDCKSSYNLDKSVHITKLI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FREQRYSLFKLVFAIMVVFLLMWAPYNIAFFLSTFKEHFSLSDCKSSYNLDKSVHITKLI
230 240 250 260 270 280
310 320 330 340 350
pF1KB8 ATTHCCINPLLYAFLDGTFSKYLCRCFHLRSNTPLQPRGQSAQGTSREEPDHSTEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ATTHCCINPLLYAFLDGTFSKYLCRCFHLRSNTPLQPRGQSAQGTSREEPDHSTEV
290 300 310 320 330 340
>>XP_016862925 (OMIM: 608379) PREDICTED: C-C chemokine r (344 aa)
initn: 2297 init1: 2297 opt: 2297 Z-score: 2395.8 bits: 451.8 E(85289): 1e-126
Smith-Waterman score: 2297; 99.7% identity (100.0% similar) in 344 aa overlap (13-356:1-344)
10 20 30 40 50 60
pF1KB8 MIYTRFLKGSLKMANYTLAPEDEYDVLIEGELESDEAEQCDKYDAQALSAQLVPSLCSAV
::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MANYTLAPEDEYDVLIEGELESDEAEQCDKYDAQALSAQLVPSLCSAV
10 20 30 40
70 80 90 100 110 120
pF1KB8 FVIGVLDNLLVVLILVKYKGLKRVENIYLLNLAVSNLCFLLTLPFWAHAGGDPMCKILIG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FVIGVLDNLLVVLILVKYKGLKRVENIYLLNLAVSNLCFLLTLPFWAHAGGDPMCKILIG
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB8 LYFVGLYSETFFNCLLTVQRYLVFLHKGNFFSARRRVPCGIITSVLAWVTAILATLPEYV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:
XP_016 LYFVGLYSETFFNCLLTVQRYLVFLHKGNFFSARRRVPCGIITSVLAWVTAILATLPEFV
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB8 VYKPQMEDQKYKCAFSRTPFLPADETFWKHFLTLKMNISVLVLPLFIFTFLYVQMRKTLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VYKPQMEDQKYKCAFSRTPFLPADETFWKHFLTLKMNISVLVLPLFIFTFLYVQMRKTLR
170 180 190 200 210 220
250 260 270 280 290 300
pF1KB8 FREQRYSLFKLVFAIMVVFLLMWAPYNIAFFLSTFKEHFSLSDCKSSYNLDKSVHITKLI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FREQRYSLFKLVFAIMVVFLLMWAPYNIAFFLSTFKEHFSLSDCKSSYNLDKSVHITKLI
230 240 250 260 270 280
310 320 330 340 350
pF1KB8 ATTHCCINPLLYAFLDGTFSKYLCRCFHLRSNTPLQPRGQSAQGTSREEPDHSTEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ATTHCCINPLLYAFLDGTFSKYLCRCFHLRSNTPLQPRGQSAQGTSREEPDHSTEV
290 300 310 320 330 340
>>NP_000570 (OMIM: 601373,609532,610379,612522) C-C chem (352 aa)
initn: 630 init1: 383 opt: 870 Z-score: 915.2 bits: 177.9 E(85289): 3.1e-44
Smith-Waterman score: 870; 44.2% identity (74.1% similar) in 301 aa overlap (37-328:17-313)
10 20 30 40 50 60
pF1KB8 LKGSLKMANYTLAPEDEYDVLIEGELESDEAEQCDKYDAQALSAQLVPSLCSAVFVIGVL
.: :.: ... ..:.:.: : : ::..: .
NP_000 MDYQVSSPIYDINYYTSEPCQKINVKQIAARLLPPLYSLVFIFGFV
10 20 30 40
70 80 90 100 110 120
pF1KB8 DNLLVVLILVKYKGLKRVENIYLLNLAVSNLCFLLTLPFWAHAG------GDPMCKILIG
:.::.:::.. : :: . .:::::::.:.: ::::.::::: . :. ::..: :
NP_000 GNMLVILILINCKRLKSMTDIYLLNLAISDLFFLLTVPFWAHYAAAQWDFGNTMCQLLTG
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB8 LYFVGLYSETFFNCLLTVQRYLVFLHKGNFFSARRRVPCGIITSVLAWVTAILATLPEYV
:::.:..: :: :::..:::. .: . : : : :..:::..::.:..:.:: .
NP_000 LYFIGFFSGIFFIILLTIDRYLAVVH-AVFALKARTVTFGVVTSVITWVVAVFASLPGII
110 120 130 140 150 160
190 200 210 220 230
pF1KB8 VYKPQMEDQKYKCAFSRTPFLPADETFWKHFLTLKMNISVLVLPLFIFTFLYVQMRKTL-
. : : .: :. :. :. .. :::.: :::. : :::::..... : . :::
NP_000 FTRSQKEGLHYTCS-SHFPY--SQYQFWKNFQTLKIVILGLVLPLLVMVICYSGILKTLL
170 180 190 200 210 220
240 250 260 270 280 290
pF1KB8 --RFREQRYSLFKLVFAIMVVFLLMWAPYNIAFFLSTFKEHFSLSDCKSSYNLDKSVHIT
: ...:. .:.:.::.:..:.::::::...:.::.: :.:..:.:: ::.....:
NP_000 RCRNEKKRHRAVRLIFTIMIVYFLFWAPYNIVLLLNTFQEFFGLNNCSSSNRLDQAMQVT
230 240 250 260 270 280
300 310 320 330 340 350
pF1KB8 KLIATTHCCINPLLYAFLDGTFSKYLCRCFHLRSNTPLQPRGQSAQGTSREEPDHSTEV
. .. :::::::..:::. : .:: :.
NP_000 ETLGMTHCCINPIIYAFVGEKFRNYLLVFFQKHIAKRFCKCCSIFQQEAPERASSVYTRS
290 300 310 320 330 340
NP_000 TGEQEISVGL
350
>>NP_001093638 (OMIM: 601373,609532,610379,612522) C-C c (352 aa)
initn: 630 init1: 383 opt: 870 Z-score: 915.2 bits: 177.9 E(85289): 3.1e-44
Smith-Waterman score: 870; 44.2% identity (74.1% similar) in 301 aa overlap (37-328:17-313)
10 20 30 40 50 60
pF1KB8 LKGSLKMANYTLAPEDEYDVLIEGELESDEAEQCDKYDAQALSAQLVPSLCSAVFVIGVL
.: :.: ... ..:.:.: : : ::..: .
NP_001 MDYQVSSPIYDINYYTSEPCQKINVKQIAARLLPPLYSLVFIFGFV
10 20 30 40
70 80 90 100 110 120
pF1KB8 DNLLVVLILVKYKGLKRVENIYLLNLAVSNLCFLLTLPFWAHAG------GDPMCKILIG
:.::.:::.. : :: . .:::::::.:.: ::::.::::: . :. ::..: :
NP_001 GNMLVILILINCKRLKSMTDIYLLNLAISDLFFLLTVPFWAHYAAAQWDFGNTMCQLLTG
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB8 LYFVGLYSETFFNCLLTVQRYLVFLHKGNFFSARRRVPCGIITSVLAWVTAILATLPEYV
:::.:..: :: :::..:::. .: . : : : :..:::..::.:..:.:: .
NP_001 LYFIGFFSGIFFIILLTIDRYLAVVH-AVFALKARTVTFGVVTSVITWVVAVFASLPGII
110 120 130 140 150 160
190 200 210 220 230
pF1KB8 VYKPQMEDQKYKCAFSRTPFLPADETFWKHFLTLKMNISVLVLPLFIFTFLYVQMRKTL-
. : : .: :. :. :. .. :::.: :::. : :::::..... : . :::
NP_001 FTRSQKEGLHYTCS-SHFPY--SQYQFWKNFQTLKIVILGLVLPLLVMVICYSGILKTLL
170 180 190 200 210 220
240 250 260 270 280 290
pF1KB8 --RFREQRYSLFKLVFAIMVVFLLMWAPYNIAFFLSTFKEHFSLSDCKSSYNLDKSVHIT
: ...:. .:.:.::.:..:.::::::...:.::.: :.:..:.:: ::.....:
NP_001 RCRNEKKRHRAVRLIFTIMIVYFLFWAPYNIVLLLNTFQEFFGLNNCSSSNRLDQAMQVT
230 240 250 260 270 280
300 310 320 330 340 350
pF1KB8 KLIATTHCCINPLLYAFLDGTFSKYLCRCFHLRSNTPLQPRGQSAQGTSREEPDHSTEV
. .. :::::::..:::. : .:: :.
NP_001 ETLGMTHCCINPIIYAFVGEKFRNYLLVFFQKHIAKRFCKCCSIFQQEAPERASSVYTRS
290 300 310 320 330 340
NP_001 TGEQEISVGL
350
>>NP_001286 (OMIM: 601159) C-C chemokine receptor type 1 (355 aa)
initn: 812 init1: 279 opt: 861 Z-score: 905.9 bits: 176.1 E(85289): 1e-43
Smith-Waterman score: 861; 43.6% identity (69.5% similar) in 321 aa overlap (20-330:4-319)
10 20 30 40 50 60
pF1KB8 MIYTRFLKGSLKMANYTLAPEDEYDVLIEGELESDEAEQCDKYDAQALSAQLVPSLCSAV
:. : :.. .: :.: . .:..:::.: : : :
NP_001 METPNTTEDYDTTTEFDYGDATPCQKVNERAFGAQLLPPLYSLV
10 20 30 40
70 80 90 100 110
pF1KB8 FVIGVLDNLLVVLILVKYKGLKRVENIYLLNLAVSNLCFLLTLPFWAHAG-------GDP
::::.. :.::::.::.:: :: . .:::::::.:.: ::.::::: ::
NP_001 FVIGLVGNILVVLVLVQYKRLKNMTSIYLLNLAISDLLFLFTLPFWIDYKLKDDWVFGDA
50 60 70 80 90 100
120 130 140 150 160 170
pF1KB8 MCKILIGLYFVGLYSETFFNCLLTVQRYLVFLHKGNFFSAR-RRVPCGIITSVLAWVTAI
::::: :.:..::::: :: :::..:::...: :. : : : :.:::.. :. ::
NP_001 MCKILSGFYYTGLYSEIFFIILLTIDRYLAIVHA--VFALRARTVTFGVITSIIIWALAI
110 120 130 140 150 160
180 190 200 210 220 230
pF1KB8 LATLPEYVVYKPQMEDQKYKCAFSRTPFLPADETFWKHFLTLKMNISVLVLPLFIFTFLY
::..: : : : .. :.. . : : :: : .::.:. :::::... . :
NP_001 LASMPGLYFSKTQWEFTHHTCSL-HFPHESLRE--WKLFQALKLNLFGLVLPLLVMIICY
170 180 190 200 210
240 250 260 270 280 290
pF1KB8 VQMRKTL--RFREQRYSLFKLVFAIMVVFLLMWAPYNIAFFLSTFKEHFSLSDCKSSYNL
. . : : : :.. . .:.:.::..:.:.:.:::.....:.:.. . .:..: .:
NP_001 TGIIKILLRRPNEKKSKAVRLIFVIMIIFFLFWTPYNLTILISVFQDFLFTHECEQSRHL
220 230 240 250 260 270
300 310 320 330 340 350
pF1KB8 DKSVHITKLIATTHCCINPLLYAFLDGTFSKYLCRCFHLRSNTPLQPRGQSAQGTSREEP
: .:..:..:: ::::.::..:::. : ::: . :: :
NP_001 DLAVQVTEVIAYTHCCVNPVIYAFVGERFRKYLRQLFHRRVAVHLVKWLPFLSVDRLERV
280 290 300 310 320 330
pF1KB8 DHSTEV
NP_001 SSTSPSTGEHELSAGF
340 350
>>NP_847899 (OMIM: 601268) C-C chemokine receptor type 3 (355 aa)
initn: 815 init1: 283 opt: 849 Z-score: 893.4 bits: 173.8 E(85289): 5e-43
Smith-Waterman score: 849; 44.9% identity (73.4% similar) in 301 aa overlap (40-328:24-317)
10 20 30 40 50 60
pF1KB8 SLKMANYTLAPEDEYDVLIEGELESDEAEQCDKYDAQALSAQLVPSLCSAVFVIGVLDNL
:.: :..:: ::.:: : : ::..:.: :.
NP_847 MTTSLDTVETFGTTSYYDDVGLLCEKADTRALMAQFVPPLYSLVFTVGLLGNV
10 20 30 40 50
70 80 90 100 110 120
pF1KB8 LVVLILVKYKGLKRVENIYLLNLAVSNLCFLLTLPFWAHA--G-----GDPMCKILIGLY
.::.::.::. :. . ::::::::.:.: ::.::::: : : : :::.: :.:
NP_847 VVVMILIKYRRLRIMTNIYLLNLAISDLLFLVTLPFWIHYVRGHNWVFGHGMCKLLSGFY
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB8 FVGLYSETFFNCLLTVQRYLVFLHKGNFFSAR-RRVPCGIITSVLAWVTAILATLPEYVV
.::::: :: :::..:::...: :. : : : :.:::...: :.::.:::..
NP_847 HTGLYSEIFFIILLTIDRYLAIVHA--VFALRARTVTFGVITSIVTWGLAVLAALPEFIF
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB8 YKPQMEDQKYKCAFSRTPFLPADETF-WKHFLTLKMNISVLVLPLFIFTFLYVQMRKTLR
:. . .. : . . : : .. :.:: ::.:.: :::::..... :. . :::
NP_847 YETEELFEETLC----SALYPEDTVYSWRHFHTLRMTIFCLVLPLLVMAICYTGIIKTL-
180 190 200 210 220
250 260 270 280 290
pF1KB8 FR---EQRYSLFKLVFAIMVVFLLMWAPYNIAFFLSTFKEHFSLSDCKSSYNLDKSVHIT
.: ...:. ..:.:.::.::...:.:::.:..::... . .::. : .:: . .:
NP_847 LRCPSKKKYKAIRLIFVIMAVFFIFWTPYNVAILLSSYQSILFGNDCERSKHLDLVMLVT
230 240 250 260 270 280
300 310 320 330 340 350
pF1KB8 KLIATTHCCINPLLYAFLDGTFSKYLCRCFHLRSNTPLQPRGQSAQGTSREEPDHSTEV
..:: .:::.::..:::. : ::: . ::
NP_847 EVIAYSHCCMNPVIYAFVGERFRKYLRHFFHRHLLMHLGRYIPFLPSEKLERTSSVSPST
290 300 310 320 330 340
NP_847 AEPELSIVF
350
>>XP_011531637 (OMIM: 601268) PREDICTED: C-C chemokine r (355 aa)
initn: 815 init1: 283 opt: 849 Z-score: 893.4 bits: 173.8 E(85289): 5e-43
Smith-Waterman score: 849; 44.9% identity (73.4% similar) in 301 aa overlap (40-328:24-317)
10 20 30 40 50 60
pF1KB8 SLKMANYTLAPEDEYDVLIEGELESDEAEQCDKYDAQALSAQLVPSLCSAVFVIGVLDNL
:.: :..:: ::.:: : : ::..:.: :.
XP_011 MTTSLDTVETFGTTSYYDDVGLLCEKADTRALMAQFVPPLYSLVFTVGLLGNV
10 20 30 40 50
70 80 90 100 110 120
pF1KB8 LVVLILVKYKGLKRVENIYLLNLAVSNLCFLLTLPFWAHA--G-----GDPMCKILIGLY
.::.::.::. :. . ::::::::.:.: ::.::::: : : : :::.: :.:
XP_011 VVVMILIKYRRLRIMTNIYLLNLAISDLLFLVTLPFWIHYVRGHNWVFGHGMCKLLSGFY
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB8 FVGLYSETFFNCLLTVQRYLVFLHKGNFFSAR-RRVPCGIITSVLAWVTAILATLPEYVV
.::::: :: :::..:::...: :. : : : :.:::...: :.::.:::..
XP_011 HTGLYSEIFFIILLTIDRYLAIVHA--VFALRARTVTFGVITSIVTWGLAVLAALPEFIF
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB8 YKPQMEDQKYKCAFSRTPFLPADETF-WKHFLTLKMNISVLVLPLFIFTFLYVQMRKTLR
:. . .. : . . : : .. :.:: ::.:.: :::::..... :. . :::
XP_011 YETEELFEETLC----SALYPEDTVYSWRHFHTLRMTIFCLVLPLLVMAICYTGIIKTL-
180 190 200 210 220
250 260 270 280 290
pF1KB8 FR---EQRYSLFKLVFAIMVVFLLMWAPYNIAFFLSTFKEHFSLSDCKSSYNLDKSVHIT
.: ...:. ..:.:.::.::...:.:::.:..::... . .::. : .:: . .:
XP_011 LRCPSKKKYKAIRLIFVIMAVFFIFWTPYNVAILLSSYQSILFGNDCERSKHLDLVMLVT
230 240 250 260 270 280
300 310 320 330 340 350
pF1KB8 KLIATTHCCINPLLYAFLDGTFSKYLCRCFHLRSNTPLQPRGQSAQGTSREEPDHSTEV
..:: .:::.::..:::. : ::: . ::
XP_011 EVIAYSHCCMNPVIYAFVGERFRKYLRHFFHRHLLMHLGRYIPFLPSEKLERTSSVSPST
290 300 310 320 330 340
XP_011 AEPELSIVF
350
356 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 10:58:29 2016 done: Sun Nov 6 10:58:30 2016
Total Scan time: 7.550 Total Display time: 0.050
Function used was FASTA [36.3.4 Apr, 2011]