FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8957, 333 aa
  1>>>pF1KB8957 333 - 333 aa - 333 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.7330+/-0.000946; mu= 4.6039+/- 0.057
 mean_var=361.6873+/-74.769, 0's: 0 Z-trim(116.4): 136  B-trim: 0 in 0/50
 Lambda= 0.067438
 statistics sampled from 16854 (16998) to 16854 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.812), E-opt: 0.2 (0.522), width:  16
 Scan time:  2.320

The best scores are:                                      opt bits E(32554)
CCDS5940.1 EN2 gene_id:2020|Hs108|chr7             ( 333) 2291 236.0 3.2e-62
CCDS2123.1 EN1 gene_id:2019|Hs108|chr2             ( 392)  774 88.5 9.4e-18


>>CCDS5940.1 EN2 gene_id:2020|Hs108|chr7                  (333 aa)
 initn: 2291 init1: 2291 opt: 2291  Z-score: 1230.6  bits: 236.0 E(32554): 3.2e-62
Smith-Waterman score: 2291; 100.0% identity (100.0% similar) in 333 aa overlap (1-333:1-333)

               10        20        30        40        50        60
pF1KB8 MEENDPKPGEAAAAVEGQRQPESSPGGGSGGGGGSSPGEADTGRRRALMLPAVLQAPGNH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 MEENDPKPGEAAAAVEGQRQPESSPGGGSGGGGGSSPGEADTGRRRALMLPAVLQAPGNH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 QHPHRITNFFIDNILRPEFGRRKDAGTCCAGAGGGRGGGAGGEGGASGAEGGGGAGGSEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 QHPHRITNFFIDNILRPEFGRRKDAGTCCAGAGGGRGGGAGGEGGASGAEGGGGAGGSEQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 LLGSGSREPRQNPPCAPGAGGPLPAAGSDSPGDGEGGSKTLSLHGGAKKGGDPGGPLDGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 LLGSGSREPRQNPPCAPGAGGPLPAAGSDSPGDGEGGSKTLSLHGGAKKGGDPGGPLDGS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 LKARGLGGGDLSVSSDSDSSQAGANLGAQPMLWPAWVYCTRYSDRPSSGPRSRKPKKKNP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 LKARGLGGGDLSVSSDSDSSQAGANLGAQPMLWPAWVYCTRYSDRPSSGPRSRKPKKKNP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 NKEDKRPRTAFTAEQLQRLKAEFQTNRYLTEQRRQSLAQELSLNESQIKIWFQNKRAKIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 NKEDKRPRTAFTAEQLQRLKAEFQTNRYLTEQRRQSLAQELSLNESQIKIWFQNKRAKIK
              250       260       270       280       290       300

              310       320       330   
pF1KB8 KATGNKNTLAVHLMAQGLYNHSTTAKEGKSDSE
       :::::::::::::::::::::::::::::::::
CCDS59 KATGNKNTLAVHLMAQGLYNHSTTAKEGKSDSE
              310       320       330   

>>CCDS2123.1 EN1 gene_id:2019|Hs108|chr2                  (392 aa)
 initn: 897 init1: 740 opt: 774  Z-score: 432.2  bits: 88.5 E(32554): 9.4e-18
Smith-Waterman score: 891; 51.3% identity (67.3% similar) in 312 aa overlap (51-333:83-392)

               30        40        50        60            70      
pF1KB8 PESSPGGGSGGGGGSSPGEADTGRRRALMLPAVLQAPGNHQHP----HRITNFFIDNILR
                                     :  : ::... .:    :: ::::::::::
CCDS21 QPAPPSPPAAPCLPPLAHHPHLPPHPPPPPPQHLAAPAHQPQPAAQLHRTTNFFIDNILR
             60        70        80        90       100       110  

         80        90       100       110       120       130      
pF1KB8 PEFGRRKDAGTCCAGAGGGRGGGAGGEGGASGAEGGGGAGGSEQLLGSGSREPRQNPP-C
       :.:: .:.       ....  ::::: ::    . :  :.: . .   :.: :      :
CCDS21 PDFGCKKEQPPPQLLVAAAARGGAGG-GGRVERDRGQTAAGRDPVHPLGTRAPGAASLLC
            120       130        140       150       160       170 

         140       150       160                               170 
pF1KB8 APGAGGPLPAAGSDSPGDGEGGSKTL------------------------SLHGGAKKGG
       :: :.   :  ::.  . : :.::.                         :  ::. .::
CCDS21 APDANCG-PPDGSQPAAAGAGASKAGNPAAAAAAAAAAVAAAAAAAAAKPSDTGGGGSGG
              180       190       200       210       220       230

             180       190       200       210       220       230 
pF1KB8 DPGGPLDGSLKARGLGGGDLSVSSDSDSSQAGANLGAQPMLWPAWVYCTRYSDRPSSGPR
         :.:   . :    :.  . . ...... .  . . ::..:::::::::::::::::::
CCDS21 GAGSPGAQGTKYPEHGNPAILLMGSANGGPVVKTDSQQPLVWPAWVYCTRYSDRPSSGPR
              240       250       260       270       280       290

             240       250       260       270       280       290 
pF1KB8 SRKPKKKNPNKEDKRPRTAFTAEQLQRLKAEFQTNRYLTEQRRQSLAQELSLNESQIKIW
       .:: :::. .:::::::::::::::::::::::.:::.::::::.:::::::::::::::
CCDS21 TRKLKKKKNEKEDKRPRTAFTAEQLQRLKAEFQANRYITEQRRQTLAQELSLNESQIKIW
              300       310       320       330       340       350

             300       310       320       330   
pF1KB8 FQNKRAKIKKATGNKNTLAVHLMAQGLYNHSTTAKEGKSDSE
       ::::::::::::: :: ::.:::::::::::::. . :..::
CCDS21 FQNKRAKIKKATGIKNGLALHLMAQGLYNHSTTTVQDKDESE
              360       370       380       390  




333 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 10:46:58 2016 done: Tue Nov  8 10:46:58 2016
 Total Scan time:  2.320 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]