FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8937, 288 aa
  1>>>pF1KB8937 288 - 288 aa - 288 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.7468+/-0.00096; mu= -5.2121+/- 0.058
 mean_var=447.7617+/-96.501, 0's: 0 Z-trim(117.7): 644  B-trim: 0 in 0/53
 Lambda= 0.060611
 statistics sampled from 17731 (18524) to 17731 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.83), E-opt: 0.2 (0.569), width:  16
 Scan time:  2.760

The best scores are:                                      opt bits E(32554)
CCDS10025.1 KLF13 gene_id:51621|Hs108|chr15        ( 288) 2004 188.4 5.4e-48
CCDS12075.1 KLF16 gene_id:83855|Hs108|chr19        ( 252)  671 71.7   6e-13
CCDS5825.1 KLF14 gene_id:136259|Hs108|chr7         ( 323)  635 68.7 6.3e-12
CCDS6633.1 KLF9 gene_id:687|Hs108|chr9             ( 244)  608 66.2 2.7e-11


>>CCDS10025.1 KLF13 gene_id:51621|Hs108|chr15             (288 aa)
 initn: 2004 init1: 2004 opt: 2004  Z-score: 975.2  bits: 188.4 E(32554): 5.4e-48
Smith-Waterman score: 2004; 100.0% identity (100.0% similar) in 288 aa overlap (1-288:1-288)

               10        20        30        40        50        60
pF1KB8 MAAAAYVDHFAAECLVSMSSRAVVHGPREGPESRPEGAAVAATPTLPRVEERRDGKDSAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MAAAAYVDHFAAECLVSMSSRAVVHGPREGPESRPEGAAVAATPTLPRVEERRDGKDSAS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 LFVVARILADLNQQAPAPAPAERREGAAARKARTPCRLPPPAPEPTSPGAEGAAAAPPSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LFVVARILADLNQQAPAPAPAERREGAAARKARTPCRLPPPAPEPTSPGAEGAAAAPPSP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 AWSEPEPEAGLEPEREPGPAGSGEPGLRQRVRRGRSRADLESPQRKHKCHYAGCEKVYGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 AWSEPEPEAGLEPEREPGPAGSGEPGLRQRVRRGRSRADLESPQRKHKCHYAGCEKVYGK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 SSHLKAHLRTHTGERPFACSWQDCNKKFARSDELARHYRTHTGEKKFSCPICEKRFMRSD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 SSHLKAHLRTHTGERPFACSWQDCNKKFARSDELARHYRTHTGEKKFSCPICEKRFMRSD
              190       200       210       220       230       240

              250       260       270       280        
pF1KB8 HLTKHARRHANFHPGMLQRRGGGSRTGSLSDYSRSDASSPTISPASSP
       ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 HLTKHARRHANFHPGMLQRRGGGSRTGSLSDYSRSDASSPTISPASSP
              250       260       270       280        

>>CCDS12075.1 KLF16 gene_id:83855|Hs108|chr19             (252 aa)
 initn: 846 init1: 576 opt: 671  Z-score: 345.9  bits: 71.7 E(32554): 6e-13
Smith-Waterman score: 703; 48.1% identity (60.8% similar) in 291 aa overlap (2-288:3-247)

                10        20        30        40        50         
pF1KB8  MAAAAYVDHFAAECLVSMSSRAVVHGPREGPESRPEGAAVAATPTLPRVEERRDGKDSA
         ::.: ::.:::. :...:: ::::  : :::    ::. ::            : :  
CCDS12 MSAAVACVDYFAADVLMAISSGAVVHRGRPGPE----GAGPAA------------GLD--
               10        20        30                        40    

      60        70        80        90       100       110         
pF1KB8 SLFVVARILADLNQQAPAPAPAERREGAAARKARTPCRLPPPAPEPTSPGAEGAAAAPPS
            .:              : :::.:.     ::   ::: :  ..::  ::::::  
CCDS12 -----VR--------------AARREAASPG---TPGP-PPPPPAASGPGP-GAAAAPHL
                                50            60        70         

     120       130          140       150       160       170      
pF1KB8 PAWSEPEPEAGLEPEREPG---PAGSGEPGLRQRVRRGRSRADLESPQRKHKCHYAGCEK
        : :      :  :   ::   ::.:.  .      :. . :   .  ..:.: .  : :
CCDS12 LAASILADLRG-GPGAAPGGASPASSSSAASSPSSGRAPGAAP-SAAAKSHRCPFPDCAK
       80         90       100       110       120        130      

        180       190       200       210       220       230      
pF1KB8 VYGKSSHLKAHLRTHTGERPFACSWQDCNKKFARSDELARHYRTHTGEKKFSCPICEKRF
       .: ::::::.:::::::::::::.:: :.::::::::::::.:::::::.::::.: :::
CCDS12 AYYKSSHLKSHLRTHTGERPFACDWQGCDKKFARSDELARHHRTHTGEKRFSCPLCSKRF
        140       150       160       170       180       190      

        240       250       260       270        280             
pF1KB8 MRSDHLTKHARRHANFHPGMLQRRGGGSRTGSLSD-YSRSDASSPTISPASSP     
        :::::.:::::: .::: .:.:   :.:. : ::    : :.::. ::: ::     
CCDS12 TRSDHLAKHARRHPGFHPDLLRR--PGARSTSPSDSLPCSLAGSPAPSPAPSPAPAGL
        200       210         220       230       240       250  

>>CCDS5825.1 KLF14 gene_id:136259|Hs108|chr7              (323 aa)
 initn: 687 init1: 553 opt: 635  Z-score: 327.6  bits: 68.7 E(32554): 6.3e-12
Smith-Waterman score: 703; 42.9% identity (60.2% similar) in 324 aa overlap (2-287:3-318)

                10        20                 30                  40
pF1KB8  MAAAAYVDHFAAECLVSMSSRAVVH---------GPREGPE---SRPEGA-------AV
         ::.: .:.::::::::::. ::::         :   : :   . ::.:       . 
CCDS58 MSAAVACLDYFAAECLVSMSAGAVVHRRPPDPEGAGGAAGSEVGAAPPESALPGPGPPGP
               10        20        30        40        50        60

               50        60         70        80        90         
pF1KB8 AATPTLPRVEERRDGKDSAS-LFVVARILADLNQQAPAPAPAERREGAAARKART---PC
       :..: ::.:     :  .:.  ...: . :::  ..   .  .  :.  : .. .   ::
CCDS58 ASVPQLPQVPAPSPGAGGAAPHLLAASVWADLRGSSGEGSWENSGEAPRASSGFSDPIPC
               70        80        90       100       110       120

        100       110       120       130       140                
pF1KB8 RLPPPAPEPTSPGAEGAAAAPPSPAWSEPEPEAGLEPEREPGPAGSG-----------EP
        .  :  :  .: : ::::.  .:  :   : .   :    .::.::            :
CCDS58 SVQTPCSE-LAP-ASGAAAVC-APESSSDAPAVPSAPAAPGAPAASGGFSGGALGAGPAP
               130         140       150       160       170       

         150       160       170       180       190       200     
pF1KB8 GLRQRVRRGRSRADLESPQRKHKCHYAGCEKVYGKSSHLKAHLRTHTGERPFACSWQDCN
       .  :  :: ::   .    ..:.: . :: :.: ::::::.: :::::::::.:.: ::.
CCDS58 AADQAPRR-RS---VTPAAKRHQCPFPGCTKAYYKSSHLKSHQRTHTGERPFSCDWLDCD
       180           190       200       210       220       230   

         210       220       230       240       250       260     
pF1KB8 KKFARSDELARHYRTHTGEKKFSCPICEKRFMRSDHLTKHARRHANFHPGMLQRRGGGSR
       :::.::::::::::::::::.::::.: :.: :::::::::::: ..:: :.. ::   :
CCDS58 KKFTRSDELARHYRTHTGEKRFSCPLCPKQFSRSDHLTKHARRHPTYHPDMIEYRGR-RR
           240       250       260       270       280       290   

             270       280            
pF1KB8 TGS----LSDYSRSDASSPTISPASSP    
       :      :..  .:.::.   .:: :     
CCDS58 TPRIDPPLTSEVESSASGSGPGPAPSFTTCL
            300       310       320   

>>CCDS6633.1 KLF9 gene_id:687|Hs108|chr9                  (244 aa)
 initn: 717 init1: 574 opt: 608  Z-score: 316.3  bits: 66.2 E(32554): 2.7e-11
Smith-Waterman score: 714; 45.8% identity (65.5% similar) in 264 aa overlap (1-259:1-235)

               10        20        30        40        50          
pF1KB8 MAAAAYVDHFAAECLVSMSSRAVVHGPREGPESRPEGAAVAATPTLPRVEERRDG----K
       :.::::.:  ::.::::.:.::.:  :..:    :. :     :    ..:. :     :
CCDS66 MSAAAYMDFVAAQCLVSISNRAAV--PEHGVA--PD-AERLRLPEREVTKEHGDPGDTWK
               10        20          30           40        50     

         60        70        80        90       100        110     
pF1KB8 DSASLFVVARILADLNQQAPAPAPAERREGAAARKARTPCRLPPPAP-EPTSPGAEGAAA
       :  .: ..:. : :::.  :  .:             . :     .: :  .  .. .. 
CCDS66 DYCTLVTIAKSLLDLNKYRPIQTP-------------SVCSDSLESPDEDMGSDSDVTTE
          60        70                     80        90       100  

         120       130       140       150       160       170     
pF1KB8 APPSPAWSEPEPEAGLEPEREPGPAGSGEPGLRQRVRRGRSRADLESPQRKHKCHYAGCE
       .  ::. :   ::   .:   :.: .  .::.   . .:.     .. ...::: :.:: 
CCDS66 SGSSPSHS---PEERQDPGSAPSPLSLLHPGV---AAKGK-----HASEKRHKCPYSGCG
            110          120       130               140       150 

         180       190       200       210       220       230     
pF1KB8 KVYGKSSHLKAHLRTHTGERPFACSWQDCNKKFARSDELARHYRTHTGEKKFSCPICEKR
       :::::::::::: :.::::::: :.: :: :::.:::::.::::::::::.: ::.::::
CCDS66 KVYGKSSHLKAHYRVHTGERPFPCTWPDCLKKFSRSDELTRHYRTHTGEKQFRCPLCEKR
             160       170       180       190       200       210 

         240       250       260       270       280        
pF1KB8 FMRSDHLTKHARRHANFHPGMLQRRGGGSRTGSLSDYSRSDASSPTISPASSP
       ::::::::::::::..:::.:..:                             
CCDS66 FMRSDHLTKHARRHTEFHPSMIKRSKKALANAL                    
             220       230       240                        




288 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 04:21:35 2016 done: Tue Nov  8 04:21:35 2016
 Total Scan time:  2.760 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]