Result of FASTA (ccds) for
pFN21AB8915
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8915, 257 aa
1>>>pF1KB8915 257 - 257 aa - 257 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.9582+/-0.000616; mu= 17.9666+/- 0.037
mean_var=78.7336+/-16.206, 0's: 0 Z-trim(113.2): 37 B-trim: 872 in 1/49
Lambda= 0.144542
statistics sampled from 13832 (13869) to 13832 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.789), E-opt: 0.2 (0.426), width: 16
Scan time: 2.480
The best scores are: opt bits E(32554)
CCDS291.1 NR0B2 gene_id:8431|Hs108|chr1 ( 257) 1783 380.4 6.6e-106
CCDS74905.1 NR2C2 gene_id:7182|Hs108|chr3 ( 596) 295 70.5 3.1e-12
CCDS2621.1 NR2C2 gene_id:7182|Hs108|chr3 ( 615) 295 70.5 3.2e-12
CCDS14223.1 NR0B1 gene_id:190|Hs108|chrX ( 470) 293 69.9 3.5e-12
CCDS5063.1 NR2E1 gene_id:7101|Hs108|chr6 ( 385) 277 66.5 3e-11
CCDS69165.1 NR2E1 gene_id:7101|Hs108|chr6 ( 422) 277 66.6 3.3e-11
>>CCDS291.1 NR0B2 gene_id:8431|Hs108|chr1 (257 aa)
initn: 1783 init1: 1783 opt: 1783 Z-score: 2014.8 bits: 380.4 E(32554): 6.6e-106
Smith-Waterman score: 1783; 100.0% identity (100.0% similar) in 257 aa overlap (1-257:1-257)
10 20 30 40 50 60
pF1KB8 MSTSQPGACPCQGAASRPAILYALLSSSLKAVPRPRSRCLCRQHRPVQLCAPHRTCREAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 MSTSQPGACPCQGAASRPAILYALLSSSLKAVPRPRSRCLCRQHRPVQLCAPHRTCREAL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 DVLAKTVAFLRNLPSFWQLPPQDQRRLLQGCWGPLFLLGLAQDAVTFEVAEAPVPSILKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 DVLAKTVAFLRNLPSFWQLPPQDQRRLLQGCWGPLFLLGLAQDAVTFEVAEAPVPSILKK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 ILLEEPSSSGGSGQLPDRPQPSLAAVQWLQCCLESFWSLELSPKEYACLKGTILFNPDVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 ILLEEPSSSGGSGQLPDRPQPSLAAVQWLQCCLESFWSLELSPKEYACLKGTILFNPDVP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 GLQAASHIGHLQQEAHWVLCEVLEPWCPAAQGRLTRVLLTASTLKSIPTSLLGDLFFRPI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 GLQAASHIGHLQQEAHWVLCEVLEPWCPAAQGRLTRVLLTASTLKSIPTSLLGDLFFRPI
190 200 210 220 230 240
250
pF1KB8 IGDVDIAGLLGDMLLLR
:::::::::::::::::
CCDS29 IGDVDIAGLLGDMLLLR
250
>>CCDS74905.1 NR2C2 gene_id:7182|Hs108|chr3 (596 aa)
initn: 277 init1: 197 opt: 295 Z-score: 333.2 bits: 70.5 E(32554): 3.1e-12
Smith-Waterman score: 295; 29.4% identity (61.3% similar) in 204 aa overlap (53-254:384-580)
30 40 50 60 70 80
pF1KB8 ALLSSSLKAVPRPRSRCLCRQHRPVQLCAPHRTCREALDVLAKTVAFLRNLPSFWQLPPQ
: :. : .: .. . :..:.: : .
CCDS74 IIEVEGPLLSDTHVTFKLTMPSPMPEYLNVHYICESASRLLFLSMHWARSIPAFQALGQD
360 370 380 390 400 410
90 100 110 120 130 140
pF1KB8 DQRRLLQGCWGPLFLLGLAQDA--VTFEVAEAPVPSILKKILLEEPSSSGGSGQLPDRPQ
. :...::. :: ::::: : ... . : . . :.. . .: . :: :: .
CCDS74 CNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSI-QEDKLSG------DRIK
420 430 440 450 460
150 160 170 180 190 200
pF1KB8 PSLAAVQWLQCCLESFWSLELSPKEYACLKGTILFNPDVPGLQAASHIGHLQQEAHWVLC
. . :: .:. .:... ::: ::. .::.:: ::: ..:.: ..:..:. :
CCDS74 QVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSPDHPGLTSTSQIEKFQEKAQMELQ
470 480 490 500 510 520
210 220 230 240 250
pF1KB8 EVLEPWCPAAQGRLTRVLLTASTLKSIPTSLLGDLFFRPIIGDVDIAGLLGDMLLLR
. .. ::.:.:. .:. . ... .::: .::.:.: ... .:
CCDS74 DYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLIGNVSIDSIIPYILKMETAE
530 540 550 560 570 580
CCDS74 YNGQITGASL
590
>>CCDS2621.1 NR2C2 gene_id:7182|Hs108|chr3 (615 aa)
initn: 277 init1: 197 opt: 295 Z-score: 333.0 bits: 70.5 E(32554): 3.2e-12
Smith-Waterman score: 295; 29.4% identity (61.3% similar) in 204 aa overlap (53-254:403-599)
30 40 50 60 70 80
pF1KB8 ALLSSSLKAVPRPRSRCLCRQHRPVQLCAPHRTCREALDVLAKTVAFLRNLPSFWQLPPQ
: :. : .: .. . :..:.: : .
CCDS26 IIEVEGPLLSDTHVTFKLTMPSPMPEYLNVHYICESASRLLFLSMHWARSIPAFQALGQD
380 390 400 410 420 430
90 100 110 120 130 140
pF1KB8 DQRRLLQGCWGPLFLLGLAQDA--VTFEVAEAPVPSILKKILLEEPSSSGGSGQLPDRPQ
. :...::. :: ::::: : ... . : . . :.. . .: . :: :: .
CCDS26 CNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSI-QEDKLSG------DRIK
440 450 460 470 480
150 160 170 180 190 200
pF1KB8 PSLAAVQWLQCCLESFWSLELSPKEYACLKGTILFNPDVPGLQAASHIGHLQQEAHWVLC
. . :: .:. .:... ::: ::. .::.:: ::: ..:.: ..:..:. :
CCDS26 QVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSPDHPGLTSTSQIEKFQEKAQMELQ
490 500 510 520 530 540
210 220 230 240 250
pF1KB8 EVLEPWCPAAQGRLTRVLLTASTLKSIPTSLLGDLFFRPIIGDVDIAGLLGDMLLLR
. .. ::.:.:. .:. . ... .::: .::.:.: ... .:
CCDS26 DYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLIGNVSIDSIIPYILKMETAE
550 560 570 580 590 600
CCDS26 YNGQITGASL
610
>>CCDS14223.1 NR0B1 gene_id:190|Hs108|chrX (470 aa)
initn: 519 init1: 293 opt: 293 Z-score: 332.2 bits: 69.9 E(32554): 3.5e-12
Smith-Waterman score: 502; 36.7% identity (61.0% similar) in 267 aa overlap (9-254:200-466)
10 20 30
pF1KB8 MSTSQPGACPC-QGAASRPAILYALLSSS--LKAVP--
: : . .. . :: . .:. .:.:
CCDS14 AWWDRSYFAQRPGGKEALPGGRATALLYRCCFCGEDHPQQGSTLYCVPTSTNQAQAAPEE
170 180 190 200 210 220
40 50 60 70 80 90
pF1KB8 RPRS---RCLCRQHRPVQLCAPHRTCREALDVLAKTVAFLRNLPSFWQLPPQDQRRLLQG
:::. ::: : .:. .:. : : ::. :.. :: : :: ..: :...
CCDS14 RPRAPWWDTSSGALRPVALKSPQVVCEAASAGLLKTLRFVKYLPCFQVLPLDQQLVLVRN
230 240 250 260 270 280
100 110 120 130
pF1KB8 CWGPLFLLGLAQDAVTFEVAEAPVPSILKKILLEEPSSSGGSGQLP-------------D
::. :..: :::: . ::..:. ::.:.::: . .::. ::
CCDS14 CWASLLMLELAQDRLQFETVEVSEPSMLQKILTTRRRETGGNEPLPVPTLQHHLAPPAEA
290 300 310 320 330 340
140 150 160 170 180 190
pF1KB8 RPQPSLAAVQWLQCCLESFWSLELSPKEYACLKGTILFNPDVPGLQAASHIGHLQQEAHW
: :: . :: ..: : . :::..: :::: ::::.:::::::::: ...: :: ..
CCDS14 RKVPSASQVQAIKCFLSKCWSLNISTKEYAYLKGTVLFNPDVPGLQCVKYIQGLQWGTQQ
350 360 370 380 390 400
200 210 220 230 240 250
pF1KB8 VLCEVLEPWCPAAQGRLTRVLLTASTLKSIPTSLLGDLFFRPIIGDVDIAGLLGDMLLLR
.: : . . . :. .. : :. : ......:::::::: :.. .. .::
CCDS14 ILSEHTRMTHQGPHDRFIELNSTLFLLRFINANVIAELFFRPIIGTVSMDDMMLEMLCTK
410 420 430 440 450 460
CCDS14 I
470
>>CCDS5063.1 NR2E1 gene_id:7101|Hs108|chr6 (385 aa)
initn: 249 init1: 132 opt: 277 Z-score: 315.3 bits: 66.5 E(32554): 3e-11
Smith-Waterman score: 281; 31.6% identity (57.1% similar) in 212 aa overlap (51-253:181-379)
30 40 50 60 70 80
pF1KB8 LYALLSSSLKAVPRPRSRCLCRQHRPVQLCAPHRTCREALDVLAKTVAFLRNLPSFWQLP
: . .:. : .: .. . ...:.: :
CCDS50 PERQTLVSLAQPTPKYPHEVNGTPMYLYEVATESVCESAARLLFMSIKWAKSVPAFSTLS
160 170 180 190 200 210
90 100 110 120 130 140
pF1KB8 PQDQRRLLQGCWGPLFLLGLAQDAVTFEVAEAPVPSILKKILLEEPSSSGGSGQLPDRPQ
::: ::. : ::.::.:: :. :: . . :: . :: .:. : .
CCDS50 LQDQLMLLEDAWRELFVLGIAQWAI-------PVDA---NTLL---AVSGMNGDNTDSQK
220 230 240 250
150 160 170 180 190
pF1KB8 PS--LAAVQWLQCCLESFWSLELSPKEYACLKGTILFN--PDVPG-----LQAASHIGHL
. .. .: :: . : .:.:. :.:::: . :. : : .. :. :. :
CCDS50 LNKIISEIQALQEVVARFRQLRLDATEFACLKCIVTFKAVPTHSGSELRSFRNAAAIAAL
260 270 280 290 300 310
200 210 220 230 240 250
pF1KB8 QQEAHWVLCEVLEPWCPAAQGRLTRVLLTASTLKSIPTSLLGDLFFRPIIGDVDIAGLLG
:.::. .: .. :. :. ..:: .:.:: : . ..::. ::.: :. ::.
CCDS50 QDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGNVPITRLLS
320 330 340 350 360 370
pF1KB8 DMLLLR
::
CCDS50 DMYKSSDI
380
>>CCDS69165.1 NR2E1 gene_id:7101|Hs108|chr6 (422 aa)
initn: 249 init1: 132 opt: 277 Z-score: 314.8 bits: 66.6 E(32554): 3.3e-11
Smith-Waterman score: 281; 31.6% identity (57.1% similar) in 212 aa overlap (51-253:218-416)
30 40 50 60 70 80
pF1KB8 LYALLSSSLKAVPRPRSRCLCRQHRPVQLCAPHRTCREALDVLAKTVAFLRNLPSFWQLP
: . .:. : .: .. . ...:.: :
CCDS69 PERQTLVSLAQPTPKYPHEVNGTPMYLYEVATESVCESAARLLFMSIKWAKSVPAFSTLS
190 200 210 220 230 240
90 100 110 120 130 140
pF1KB8 PQDQRRLLQGCWGPLFLLGLAQDAVTFEVAEAPVPSILKKILLEEPSSSGGSGQLPDRPQ
::: ::. : ::.::.:: :. :: . . :: . :: .:. : .
CCDS69 LQDQLMLLEDAWRELFVLGIAQWAI-------PVDA---NTLL---AVSGMNGDNTDSQK
250 260 270 280 290
150 160 170 180 190
pF1KB8 PS--LAAVQWLQCCLESFWSLELSPKEYACLKGTILFN--PDVPG-----LQAASHIGHL
. .. .: :: . : .:.:. :.:::: . :. : : .. :. :. :
CCDS69 LNKIISEIQALQEVVARFRQLRLDATEFACLKCIVTFKAVPTHSGSELRSFRNAAAIAAL
300 310 320 330 340 350
200 210 220 230 240 250
pF1KB8 QQEAHWVLCEVLEPWCPAAQGRLTRVLLTASTLKSIPTSLLGDLFFRPIIGDVDIAGLLG
:.::. .: .. :. :. ..:: .:.:: : . ..::. ::.: :. ::.
CCDS69 QDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGNVPITRLLS
360 370 380 390 400 410
pF1KB8 DMLLLR
::
CCDS69 DMYKSSDI
420
257 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 22:47:11 2016 done: Sat Nov 5 22:47:12 2016
Total Scan time: 2.480 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]