Result of FASTA (omim) for
pFN21AB8912
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8912, 251 aa
1>>>pF1KB8912 251 - 251 aa - 251 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 12.5865+/-0.000453; mu= -14.3217+/- 0.029
mean_var=664.7632+/-132.907, 0's: 0 Z-trim(126.5): 95 B-trim: 0 in 0/61
Lambda= 0.049744
statistics sampled from 52393 (52504) to 52393 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.853), E-opt: 0.2 (0.616), width: 16
Scan time: 6.860
The best scores are: opt bits E(85289)
NP_076920 (OMIM: 142965) homeobox protein Hox-B4 [ ( 251) 1845 145.9 6.4e-35
NP_055435 (OMIM: 142974) homeobox protein Hox-C4 [ ( 264) 925 79.9 4.9e-15
NP_705897 (OMIM: 142974) homeobox protein Hox-C4 [ ( 264) 925 79.9 4.9e-15
NP_055436 (OMIM: 142981) homeobox protein Hox-D4 [ ( 255) 856 75.0 1.5e-13
NP_002132 (OMIM: 142953) homeobox protein Hox-A4 [ ( 320) 743 67.0 4.8e-11
NP_061975 (OMIM: 142952) homeobox protein Hox-A5 [ ( 270) 527 51.4 2e-06
NP_002138 (OMIM: 142960) homeobox protein Hox-B5 [ ( 269) 487 48.5 1.4e-05
XP_011523029 (OMIM: 142961) PREDICTED: homeobox pr ( 288) 461 46.7 5.5e-05
XP_005257340 (OMIM: 142961) PREDICTED: homeobox pr ( 224) 457 46.2 5.7e-05
NP_061825 (OMIM: 142961) homeobox protein Hox-B6 [ ( 224) 457 46.2 5.7e-05
XP_005257341 (OMIM: 142961) PREDICTED: homeobox pr ( 224) 457 46.2 5.7e-05
NP_061826 (OMIM: 142973) homeobox protein Hox-C5 [ ( 222) 456 46.2 6e-05
XP_005249787 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 432 44.8 0.0003
XP_006715778 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 432 44.8 0.0003
XP_011513645 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 432 44.8 0.0003
NP_705895 (OMIM: 142954) homeobox protein Hox-A3 i ( 443) 432 44.8 0.0003
XP_005249789 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 432 44.8 0.0003
XP_005249788 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 432 44.8 0.0003
NP_109377 (OMIM: 142954) homeobox protein Hox-A3 i ( 443) 432 44.8 0.0003
NP_076919 (OMIM: 142951) homeobox protein Hox-A6 [ ( 233) 421 43.7 0.00035
NP_062458 (OMIM: 142985) homeobox protein Hox-D8 i ( 290) 414 43.3 0.00057
NP_001186675 (OMIM: 142985) homeobox protein Hox-D ( 289) 411 43.1 0.00066
NP_710160 (OMIM: 142972) homeobox protein Hox-C6 i ( 153) 398 41.8 0.00085
NP_004494 (OMIM: 142972) homeobox protein Hox-C6 i ( 235) 398 42.0 0.0011
XP_011509367 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 404 42.8 0.0012
XP_006712540 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 404 42.8 0.0012
XP_005246568 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 404 42.8 0.0012
XP_011509368 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 404 42.8 0.0012
XP_005246567 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 404 42.8 0.0012
XP_005246570 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 404 42.8 0.0012
XP_005246566 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 404 42.8 0.0012
NP_008829 (OMIM: 142980) homeobox protein Hox-D3 [ ( 432) 404 42.8 0.0012
NP_000200 (OMIM: 125853,260370,600733,606176,60639 ( 283) 387 41.4 0.0022
NP_008827 (OMIM: 142950) homeobox protein Hox-A7 [ ( 230) 377 40.5 0.0031
NP_004493 (OMIM: 142962) homeobox protein Hox-B7 [ ( 217) 362 39.4 0.0063
>>NP_076920 (OMIM: 142965) homeobox protein Hox-B4 [Homo (251 aa)
initn: 1845 init1: 1845 opt: 1845 Z-score: 748.0 bits: 145.9 E(85289): 6.4e-35
Smith-Waterman score: 1845; 100.0% identity (100.0% similar) in 251 aa overlap (1-251:1-251)
10 20 30 40 50 60
pF1KB8 MAMSSFLINSNYVDPKFPPCEEYSQSDYLPSDHSPGYYAGGQRRESSFQPEAGFGRRAAC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_076 MAMSSFLINSNYVDPKFPPCEEYSQSDYLPSDHSPGYYAGGQRRESSFQPEAGFGRRAAC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 TVQRYAACRDPGPPPPPPPPPPPPPPPGLSPRAPAPPPAGALLPEPGQRCEAVSSSPPPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_076 TVQRYAACRDPGPPPPPPPPPPPPPPPGLSPRAPAPPPAGALLPEPGQRCEAVSSSPPPP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 PCAQNPLHPSPSHSACKEPVVYPWMRKVHVSTVNPNYAGGEPKRSRTAYTRQQVLELEKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_076 PCAQNPLHPSPSHSACKEPVVYPWMRKVHVSTVNPNYAGGEPKRSRTAYTRQQVLELEKE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 FHYNRYLTRRRRVEIAHALCLSERQIKIWFQNRRMKWKKDHKLPNTKIRSGGAAGSAGGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_076 FHYNRYLTRRRRVEIAHALCLSERQIKIWFQNRRMKWKKDHKLPNTKIRSGGAAGSAGGP
190 200 210 220 230 240
250
pF1KB8 PGRPNGGPRAL
:::::::::::
NP_076 PGRPNGGPRAL
250
>>NP_055435 (OMIM: 142974) homeobox protein Hox-C4 [Homo (264 aa)
initn: 1096 init1: 704 opt: 925 Z-score: 390.9 bits: 79.9 E(85289): 4.9e-15
Smith-Waterman score: 953; 59.9% identity (71.8% similar) in 252 aa overlap (1-237:1-231)
10 20 30 40 50 60
pF1KB8 MAMSSFLINSNYVDPKFPPCEEYSQSDYLPSDHSPGYYAGGQRRESSFQPEAGFGRRAAC
: :::.:..:::.::::::::::::..:.: .::: :: :. :::.:: .
NP_055 MIMSSYLMDSNYIDPKFPPCEEYSQNSYIP-EHSPEYY--GRTRESGFQHHH--------
10 20 30 40
70 80 90 100 110
pF1KB8 TVQRYAACRDPGPPPPPPPPPPPPP-------PPGLSPRAPAPPPAGALLPEPGQR-CE-
.. ::::: : : :: : :. .: :: :: .: ::
NP_055 --------QELYPPPPPRPSYPERQYSCTSLQGPGNS-RGHGPAQAGHHHPEKSQSLCEP
50 60 70 80 90 100
120 130 140 150 160
pF1KB8 ------AVSSSPPPPPCAQNPLHPSPSHSACKEPVVYPWMRKVHVSTVNPNYAGGEPKRS
..: :: :: :.: : :: .: :.:.:::::.:.::::::::: :::::::
NP_055 APLSGASASPSPAPPACSQ-PAPDHPSSAASKQPIVYPWMKKIHVSTVNPNYNGGEPKRS
110 120 130 140 150
170 180 190 200 210 220
pF1KB8 RTAYTRQQVLELEKEFHYNRYLTRRRRVEIAHALCLSERQIKIWFQNRRMKWKKDHKLPN
:::::::::::::::::::::::::::.::::.:::::::::::::::::::::::.:::
NP_055 RTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPN
160 170 180 190 200 210
230 240 250
pF1KB8 TKIRSGGAAGSAGGPPGRPNGGPRAL
::.::. ::.:
NP_055 TKVRSAPPAGAAPSTLSAATPGTSEDHSQSATPPEQQRAEDITRL
220 230 240 250 260
>>NP_705897 (OMIM: 142974) homeobox protein Hox-C4 [Homo (264 aa)
initn: 1096 init1: 704 opt: 925 Z-score: 390.9 bits: 79.9 E(85289): 4.9e-15
Smith-Waterman score: 953; 59.9% identity (71.8% similar) in 252 aa overlap (1-237:1-231)
10 20 30 40 50 60
pF1KB8 MAMSSFLINSNYVDPKFPPCEEYSQSDYLPSDHSPGYYAGGQRRESSFQPEAGFGRRAAC
: :::.:..:::.::::::::::::..:.: .::: :: :. :::.:: .
NP_705 MIMSSYLMDSNYIDPKFPPCEEYSQNSYIP-EHSPEYY--GRTRESGFQHHH--------
10 20 30 40
70 80 90 100 110
pF1KB8 TVQRYAACRDPGPPPPPPPPPPPPP-------PPGLSPRAPAPPPAGALLPEPGQR-CE-
.. ::::: : : :: : :. .: :: :: .: ::
NP_705 --------QELYPPPPPRPSYPERQYSCTSLQGPGNS-RGHGPAQAGHHHPEKSQSLCEP
50 60 70 80 90 100
120 130 140 150 160
pF1KB8 ------AVSSSPPPPPCAQNPLHPSPSHSACKEPVVYPWMRKVHVSTVNPNYAGGEPKRS
..: :: :: :.: : :: .: :.:.:::::.:.::::::::: :::::::
NP_705 APLSGASASPSPAPPACSQ-PAPDHPSSAASKQPIVYPWMKKIHVSTVNPNYNGGEPKRS
110 120 130 140 150
170 180 190 200 210 220
pF1KB8 RTAYTRQQVLELEKEFHYNRYLTRRRRVEIAHALCLSERQIKIWFQNRRMKWKKDHKLPN
:::::::::::::::::::::::::::.::::.:::::::::::::::::::::::.:::
NP_705 RTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPN
160 170 180 190 200 210
230 240 250
pF1KB8 TKIRSGGAAGSAGGPPGRPNGGPRAL
::.::. ::.:
NP_705 TKVRSAPPAGAAPSTLSAATPGTSEDHSQSATPPEQQRAEDITRL
220 230 240 250 260
>>NP_055436 (OMIM: 142981) homeobox protein Hox-D4 [Homo (255 aa)
initn: 965 init1: 599 opt: 856 Z-score: 364.3 bits: 75.0 E(85289): 1.5e-13
Smith-Waterman score: 862; 58.2% identity (72.5% similar) in 244 aa overlap (1-237:1-229)
10 20 30 40 50 60
pF1KB8 MAMSSFLINSNYVDPKFPPCEEYSQSDYLPSDHSPGYYAGGQRRESSFQPEAGFGRRAAC
:.:::...::.:::::::::::: :. :: .... ::.:: . ..::: :. :
NP_055 MVMSSYMVNSKYVDPKFPPCEEYLQGGYL-GEQGADYYGGGAQG-ADFQPP-GLYPRPDF
10 20 30 40 50
70 80 90 100 110
pF1KB8 TVQRYAACRDPGPPPPPPP--PPPPPPPPG---LSPRAPAP-PPAGALLPEPGQRCEAVS
: ... ::: : : :: .: : : ::: : :: : : :
NP_055 GEQPFGGS-GPGPGSALPARGHGQEPGGPGGHYAAPGEPCPAPPAPPPAPLPGAR--AYS
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB8 SSPPPPPCAQNPLHPSPSHSACKEP-VVYPWMRKVHVSTVNPNYAGGEPKRSRTAYTRQQ
.: : : :: .: :.: ::::::.::::..:::::.:::::::::::::::
NP_055 QSDPKQP---------PSGTALKQPAVVYPWMKKVHVNSVNPNYTGGEPKRSRTAYTRQQ
120 130 140 150 160
180 190 200 210 220 230
pF1KB8 VLELEKEFHYNRYLTRRRRVEIAHALCLSERQIKIWFQNRRMKWKKDHKLPNTKIRSGGA
:::::::::.:::::::::.::::.::::::::::::::::::::::::::::: ::...
NP_055 VLELEKEFHFNRYLTRRRRIEIAHTLCLSERQIKIWFQNRRMKWKKDHKLPNTKGRSSSS
170 180 190 200 210 220
240 250
pF1KB8 AGSAGGPPGRPNGGPRAL
..:.
NP_055 SSSSSCSSSVAPSQHLQPMAKDHHTDLTTL
230 240 250
>>NP_002132 (OMIM: 142953) homeobox protein Hox-A4 [Homo (320 aa)
initn: 881 init1: 686 opt: 743 Z-score: 319.4 bits: 67.0 E(85289): 4.8e-11
Smith-Waterman score: 803; 50.2% identity (66.7% similar) in 255 aa overlap (12-243:42-296)
10 20 30
pF1KB8 MAMSSFLINSNYVDPKFPPCEEYS-QSDYLPS-----DHSP
: .: :: .. :. :: . .
NP_002 YIEPKFPPFEEYAQHSGSGGADGGPGGGPGYQQPPAPPTQHLPLQQPQLPHAGGGREPTA
20 30 40 50 60 70
40 50 60 70 80
pF1KB8 GYYAGGQRRESSFQPEAGFGRRAACTVQR---YAACRDPGPPPPPPPPPPPPPPPG----
.::: :: .. : . ..: . : . .:: :: : :: :.
NP_002 SYYAPRTAREPAYPAAALYPAHGAADTAYPYGYRGGASPGRPPQPEQPPAQAKGPAHGLH
80 90 100 110 120 130
90 100 110 120 130
pF1KB8 ----LSPRAPAPPPAGALLPEPGQRCEAVSSSPPPPPCAQNPLHP------SPSHSACKE
:.:. : : :. : .::::. ..: : .. : : :: ::
NP_002 ASHVLQPQLPPPLQPRAVPPAAPRRCEAAPATPGVPAGGSAPACPLLLADKSPLGLKGKE
140 150 160 170 180 190
140 150 160 170 180 190
pF1KB8 PVVYPWMRKVHVSTVNPNYAGGEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRVEIAHA
:::::::.:.:::.:::.: ::::::::::::::::::::::::.:::::::::.::::.
NP_002 PVVYPWMKKIHVSAVNPSYNGGEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHT
200 210 220 230 240 250
200 210 220 230 240 250
pF1KB8 LCLSERQIKIWFQNRRMKWKKDHKLPNTKIRSGGAAGSAGGPPGRPNGGPRAL
:::::::.:::::::::::::::::::::.::...:....::::.
NP_002 LCLSERQVKIWFQNRRMKWKKDHKLPNTKMRSSNSASASAGPPGKAQTQSPHLHPHPHPS
260 270 280 290 300 310
NP_002 TSTPVPSSI
320
>>NP_061975 (OMIM: 142952) homeobox protein Hox-A5 [Homo (270 aa)
initn: 514 init1: 396 opt: 527 Z-score: 236.4 bits: 51.4 E(85289): 2e-06
Smith-Waterman score: 536; 43.4% identity (60.2% similar) in 226 aa overlap (23-234:49-267)
10 20 30 40 50
pF1KB8 MAMSSFLINSNYVDPKFPPCEEYSQSDYLPSDHSPGYYAGGQRRESSFQPEA
:. : . . :....:.: :. :
NP_061 YQLHNYGDHSSVSEQFRDSASMHSGRYGYGYNGMDLSVGRSGSGHFGSGER-ARSYAASA
20 30 40 50 60 70
60 70 80 90 100
pF1KB8 GFGRRAACTVQRYA--ACRDPGPPPPPPPPPPPPPPPG----------LSPRAPAPPPAG
. :: . ::. : .: : : : : :: :: . : ::
NP_061 S----AAPAEPRYSQPATSTHSPQPDPLPCSAVAPSPGSDSHHGGKNSLSNSSGASADAG
80 90 100 110 120 130
110 120 130 140 150
pF1KB8 A--LLPEPGQRCEAVSSSPPPPPCAQNPLHPSPSHSACKEPVVYPWMRKVHVSTVNPNYA
. . . : . . : : . :: . .: .::::::.:.: . : .
NP_061 STHISSREGVGTASGAEEDAPASSEQASAQSEPSPAPPAQPQIYPWMRKLHIS--HDNIG
140 150 160 170 180 190
160 170 180 190 200 210
pF1KB8 GGEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRVEIAHALCLSERQIKIWFQNRRMKWK
: : ::.:::::: :.::::::::.:::::::::.:::::::::::::::::::::::::
NP_061 GPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWK
200 210 220 230 240 250
220 230 240 250
pF1KB8 KDHKLPNTKIRSGGAAGSAGGPPGRPNGGPRAL
::.:: . .. ..:.:
NP_061 KDNKLKSMSMAAAGGAFRP
260 270
>>NP_002138 (OMIM: 142960) homeobox protein Hox-B5 [Homo (269 aa)
initn: 531 init1: 398 opt: 487 Z-score: 220.9 bits: 48.5 E(85289): 1.4e-05
Smith-Waterman score: 487; 58.7% identity (77.8% similar) in 126 aa overlap (111-234:144-266)
90 100 110 120 130
pF1KB8 PPPPPPPGLSPRAPAPPPAGALLPEPGQRCEAVS--SSPPPPPCAQNPLHPSPSHSACKE
::.: ::: .:. : . .
NP_002 ASSPSDQATSASSSANFTEIDEASASSEPEEAASQLSSPSLARAQPEPMATSTAAPEGQT
120 130 140 150 160 170
140 150 160 170 180 190
pF1KB8 PVVYPWMRKVHVSTVNPNYAGGEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRVEIAHA
: ..:::::.:.: ...: . ::.:::::: :.::::::::.:::::::::.:::::
NP_002 PQIFPWMRKLHISH---DMTGPDGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHA
180 190 200 210 220 230
200 210 220 230 240 250
pF1KB8 LCLSERQIKIWFQNRRMKWKKDHKLPNTKIRSGGAAGSAGGPPGRPNGGPRAL
::::::::::::::::::::::.:: . .. ..:.:
NP_002 LCLSERQIKIWFQNRRMKWKKDNKLKSMSLATAGSAFQP
240 250 260
>>XP_011523029 (OMIM: 142961) PREDICTED: homeobox protei (288 aa)
initn: 417 init1: 361 opt: 461 Z-score: 210.5 bits: 46.7 E(85289): 5.5e-05
Smith-Waterman score: 487; 43.0% identity (59.6% similar) in 223 aa overlap (15-223:58-271)
10 20 30 40
pF1KB8 MAMSSFLINSNYVDPKFPPCEEYSQSDYLPSDHSPGYYAGGQRR
:. :: .:.:. .. : :.::
XP_011 STGRQFCGFNAARRSDYKTQQIINPAEQQRPRAPP---LPMSSYFVNSTFPVTLASGQ--
30 40 50 60 70 80
50 60 70 80 90 100
pF1KB8 ESSFQPEAGFGRRAACTVQRYAACRDPGPPPPPPPPPP---PPPPPGLSPRAPAP-PPAG
:: . .. : ...: : ::: :: : . :: ::
XP_011 ESFLGQLPLYSSGYADPLRHYPAPYGPGPGQDKGFATSSYYPPAGGGYGRAAPCDYGPAP
90 100 110 120 130 140
110 120 130 140 150
pF1KB8 ALLPEPGQRCEAVSSS---PP--PPP----CAQNP-LHPSPSHSACKEPVVYPWMRKVHV
:. : . : :.:.. :: : : :::. . .. :. :: ::::...
XP_011 AFYREKESAC-ALSGADEQPPFHPEPRKSDCAQDKSVFGETEEQKCSTPV-YPWMQRM--
150 160 170 180 190
160 170 180 190 200 210
pF1KB8 STVNPNYAGGEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRVEIAHALCLSERQIKIWF
.. : . : .:.: .::: :.::::::::::::::::::.::::::::.::::::::
XP_011 NSCNSSSFGPSGRRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIWF
200 210 220 230 240 250
220 230 240 250
pF1KB8 QNRRMKWKKDHKLPNTKIRSGGAAGSAGGPPGRPNGGPRAL
:::::::::. ::
XP_011 QNRRMKWKKESKLLSASQLSAEEEEEKQAE
260 270 280
>>XP_005257340 (OMIM: 142961) PREDICTED: homeobox protei (224 aa)
initn: 394 init1: 361 opt: 457 Z-score: 210.2 bits: 46.2 E(85289): 5.7e-05
Smith-Waterman score: 475; 43.9% identity (60.4% similar) in 212 aa overlap (26-223:2-207)
10 20 30 40 50 60
pF1KB8 MAMSSFLINSNYVDPKFPPCEEYSQSDYLPSDHSPGYYAGGQRRESSFQPEAGFGRRAAC
:.:. .. : :.:: :: . .. :
XP_005 MSSYFVNSTFPVTLASGQ--ESFLGQLPLYSSGYAD
10 20 30
70 80 90 100 110
pF1KB8 TVQRYAACRDPGPPPPPPPPPP---PPPPPGLSPRAPAP-PPAGALLPEPGQRCEAVSSS
...: : ::: :: : . :: :: :. : . : :.:..
XP_005 PLRHYPAPYGPGPGQDKGFATSSYYPPAGGGYGRAAPCDYGPAPAFYREKESAC-ALSGA
40 50 60 70 80 90
120 130 140 150 160
pF1KB8 ---PP--PPP----CAQNP-LHPSPSHSACKEPVVYPWMRKVHVSTVNPNYAGGEPKRSR
:: : : :::. . .. :. :: ::::.... . : . : .:.:
XP_005 DEQPPFHPEPRKSDCAQDKSVFGETEEQKCSTPV-YPWMQRMN--SCNSSSFGPSGRRGR
100 110 120 130 140 150
170 180 190 200 210 220
pF1KB8 TAYTRQQVLELEKEFHYNRYLTRRRRVEIAHALCLSERQIKIWFQNRRMKWKKDHKLPNT
.::: :.::::::::::::::::::.::::::::.:::::::::::::::::. ::
XP_005 QTYTRYQTLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKESKLLSA
160 170 180 190 200 210
230 240 250
pF1KB8 KIRSGGAAGSAGGPPGRPNGGPRAL
XP_005 SQLSAEEEEEKQAE
220
>>NP_061825 (OMIM: 142961) homeobox protein Hox-B6 [Homo (224 aa)
initn: 394 init1: 361 opt: 457 Z-score: 210.2 bits: 46.2 E(85289): 5.7e-05
Smith-Waterman score: 475; 43.9% identity (60.4% similar) in 212 aa overlap (26-223:2-207)
10 20 30 40 50 60
pF1KB8 MAMSSFLINSNYVDPKFPPCEEYSQSDYLPSDHSPGYYAGGQRRESSFQPEAGFGRRAAC
:.:. .. : :.:: :: . .. :
NP_061 MSSYFVNSTFPVTLASGQ--ESFLGQLPLYSSGYAD
10 20 30
70 80 90 100 110
pF1KB8 TVQRYAACRDPGPPPPPPPPPP---PPPPPGLSPRAPAP-PPAGALLPEPGQRCEAVSSS
...: : ::: :: : . :: :: :. : . : :.:..
NP_061 PLRHYPAPYGPGPGQDKGFATSSYYPPAGGGYGRAAPCDYGPAPAFYREKESAC-ALSGA
40 50 60 70 80 90
120 130 140 150 160
pF1KB8 ---PP--PPP----CAQNP-LHPSPSHSACKEPVVYPWMRKVHVSTVNPNYAGGEPKRSR
:: : : :::. . .. :. :: ::::.... . : . : .:.:
NP_061 DEQPPFHPEPRKSDCAQDKSVFGETEEQKCSTPV-YPWMQRMN--SCNSSSFGPSGRRGR
100 110 120 130 140 150
170 180 190 200 210 220
pF1KB8 TAYTRQQVLELEKEFHYNRYLTRRRRVEIAHALCLSERQIKIWFQNRRMKWKKDHKLPNT
.::: :.::::::::::::::::::.::::::::.:::::::::::::::::. ::
NP_061 QTYTRYQTLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKESKLLSA
160 170 180 190 200 210
230 240 250
pF1KB8 KIRSGGAAGSAGGPPGRPNGGPRAL
NP_061 SQLSAEEEEEKQAE
220
251 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 02:25:07 2016 done: Sun Nov 6 02:25:08 2016
Total Scan time: 6.860 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]