Result of FASTA (omim) for
pFN21AB8900
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8900, 233 aa
1>>>pF1KB8900 233 - 233 aa - 233 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.5299+/-0.000276; mu= 7.7820+/- 0.017
mean_var=203.4235+/-41.715, 0's: 0 Z-trim(125.4): 78 B-trim: 916 in 1/58
Lambda= 0.089924
statistics sampled from 48855 (48994) to 48855 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.856), E-opt: 0.2 (0.574), width: 16
Scan time: 8.170
The best scores are: opt bits E(85289)
NP_008873 (OMIM: 601297) protein SOX-15 [Homo sapi ( 233) 1644 224.3 1.4e-58
NP_005625 (OMIM: 300123,312000,313430) transcripti ( 446) 508 77.2 5e-14
NP_003097 (OMIM: 184429,189960,206900) transcripti ( 317) 499 75.9 8.9e-14
NP_005977 (OMIM: 602148) transcription factor SOX- ( 391) 485 74.2 3.6e-13
NP_004180 (OMIM: 604747) transcription factor SOX- ( 240) 474 72.5 7e-13
NP_009015 (OMIM: 604974) transcription factor SOX- ( 276) 471 72.2 1e-12
NP_060889 (OMIM: 137940,601618,607823) transcripti ( 384) 430 67.0 5e-11
NP_071899 (OMIM: 610928,613674) transcription fact ( 414) 430 67.1 5.3e-11
NP_008874 (OMIM: 601947) transcription factor SOX- ( 315) 424 66.2 7.5e-11
NP_003098 (OMIM: 184430) transcription factor SOX- ( 474) 426 66.6 8.3e-11
NP_055402 (OMIM: 605923) transcription factor SOX- ( 446) 413 64.9 2.6e-10
NP_003099 (OMIM: 600898,615866) transcription fact ( 441) 412 64.8 2.8e-10
NP_008872 (OMIM: 602229,609136,611584,613266) tran ( 466) 408 64.3 4.1e-10
NP_000337 (OMIM: 114290,608160,616425) transcripti ( 509) 408 64.3 4.4e-10
NP_003131 (OMIM: 400044,400045,480000) sex-determi ( 204) 381 60.4 2.7e-09
NP_113627 (OMIM: 612202) transcription factor SOX- ( 388) 384 61.1 3.2e-09
NP_821078 (OMIM: 604975,616803) transcription fact ( 377) 321 52.9 8.9e-07
XP_011519144 (OMIM: 604975,616803) PREDICTED: tran ( 415) 321 52.9 9.5e-07
NP_001248343 (OMIM: 604975,616803) transcription f ( 642) 321 53.1 1.3e-06
XP_005245680 (OMIM: 604748) PREDICTED: transcripti ( 621) 320 53.0 1.4e-06
NP_005677 (OMIM: 604748) transcription factor SOX- ( 622) 320 53.0 1.4e-06
XP_016875389 (OMIM: 604975,616803) PREDICTED: tran ( 715) 321 53.2 1.4e-06
XP_016875390 (OMIM: 604975,616803) PREDICTED: tran ( 715) 321 53.2 1.4e-06
XP_016875387 (OMIM: 604975,616803) PREDICTED: tran ( 715) 321 53.2 1.4e-06
XP_016875388 (OMIM: 604975,616803) PREDICTED: tran ( 715) 321 53.2 1.4e-06
XP_016875386 (OMIM: 604975,616803) PREDICTED: tran ( 716) 321 53.2 1.4e-06
NP_001317714 (OMIM: 604975,616803) transcription f ( 728) 321 53.2 1.4e-06
XP_011519140 (OMIM: 604975,616803) PREDICTED: tran ( 729) 321 53.2 1.4e-06
NP_694534 (OMIM: 604975,616803) transcription fact ( 750) 321 53.2 1.4e-06
XP_016875385 (OMIM: 604975,616803) PREDICTED: tran ( 750) 321 53.2 1.4e-06
XP_011519137 (OMIM: 604975,616803) PREDICTED: tran ( 751) 321 53.2 1.4e-06
XP_016875381 (OMIM: 604975,616803) PREDICTED: tran ( 751) 321 53.2 1.4e-06
XP_011519139 (OMIM: 604975,616803) PREDICTED: tran ( 751) 321 53.2 1.4e-06
XP_016875383 (OMIM: 604975,616803) PREDICTED: tran ( 751) 321 53.2 1.4e-06
XP_016875382 (OMIM: 604975,616803) PREDICTED: tran ( 751) 321 53.2 1.4e-06
XP_011519136 (OMIM: 604975,616803) PREDICTED: tran ( 751) 321 53.2 1.4e-06
XP_016875384 (OMIM: 604975,616803) PREDICTED: tran ( 751) 321 53.2 1.4e-06
XP_016875380 (OMIM: 604975,616803) PREDICTED: tran ( 751) 321 53.2 1.4e-06
XP_016875379 (OMIM: 604975,616803) PREDICTED: tran ( 751) 321 53.2 1.4e-06
NP_001248344 (OMIM: 604975,616803) transcription f ( 753) 321 53.2 1.4e-06
XP_011519135 (OMIM: 604975,616803) PREDICTED: tran ( 754) 321 53.2 1.4e-06
NP_008871 (OMIM: 604975,616803) transcription fact ( 763) 321 53.2 1.4e-06
XP_011519134 (OMIM: 604975,616803) PREDICTED: tran ( 764) 321 53.2 1.4e-06
XP_016875378 (OMIM: 604975,616803) PREDICTED: tran ( 792) 321 53.2 1.5e-06
XP_016875377 (OMIM: 604975,616803) PREDICTED: tran ( 793) 321 53.2 1.5e-06
NP_201583 (OMIM: 607257) transcription factor SOX- ( 808) 314 52.3 2.8e-06
NP_001139283 (OMIM: 607257) transcription factor S ( 801) 311 51.9 3.7e-06
NP_059978 (OMIM: 607257) transcription factor SOX- ( 804) 311 52.0 3.7e-06
NP_001139291 (OMIM: 607257) transcription factor S ( 841) 311 52.0 3.8e-06
NP_848511 (OMIM: 606698) transcription factor SOX- ( 753) 287 48.8 3e-05
>>NP_008873 (OMIM: 601297) protein SOX-15 [Homo sapiens] (233 aa)
initn: 1644 init1: 1644 opt: 1644 Z-score: 1172.7 bits: 224.3 E(85289): 1.4e-58
Smith-Waterman score: 1644; 100.0% identity (100.0% similar) in 233 aa overlap (1-233:1-233)
10 20 30 40 50 60
pF1KB8 MALPGSSQDQAWSLEPPAATAAASSSSGPQEREGAGSPAAPGTLPLEKVKRPMNAFMVWS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 MALPGSSQDQAWSLEPPAATAAASSSSGPQEREGAGSPAAPGTLPLEKVKRPMNAFMVWS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 SAQRRQMAQQNPKMHNSEISKRLGAQWKLLDEDEKRPFVEEAKRLRARHLRDYPDYKYRP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 SAQRRQMAQQNPKMHNSEISKRLGAQWKLLDEDEKRPFVEEAKRLRARHLRDYPDYKYRP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 RRKAKSSGAGPSRCGQGRGNLASGGPLWGPGYATTQPSRGFGYRPPSYSTAYLPGSYGSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 RRKAKSSGAGPSRCGQGRGNLASGGPLWGPGYATTQPSRGFGYRPPSYSTAYLPGSYGSS
130 140 150 160 170 180
190 200 210 220 230
pF1KB8 HCKLEAPSPCSLPQSDPRLQGELLPTYTHYLPPGSPTPYNPPLAGAPMPLTHL
:::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 HCKLEAPSPCSLPQSDPRLQGELLPTYTHYLPPGSPTPYNPPLAGAPMPLTHL
190 200 210 220 230
>>NP_005625 (OMIM: 300123,312000,313430) transcription f (446 aa)
initn: 520 init1: 442 opt: 508 Z-score: 372.8 bits: 77.2 E(85289): 5e-14
Smith-Waterman score: 508; 41.4% identity (64.0% similar) in 239 aa overlap (4-228:87-321)
10 20
pF1KB8 MALPGSSQDQAWSLEPPAATAAASSSS----GP
: .. :: . ::: ..:..:: :
NP_005 APGAPSPPATLAHLLPAPAMYSLLETELKNPVGTPTQAAGTGGPAAPGGAGKSSANAAGG
60 70 80 90 100 110
30 40 50 60 70 80
pF1KB8 QEREGAGSPAAPGT---LPLEKVKRPMNAFMVWSSAQRRQMAQQNPKMHNSEISKRLGAQ
. :..: .: : ..:::::::::::: .:::.:: .:::::::::::::::.
NP_005 ANSGGGSSGGASGGGGGTDQDRVKRPMNAFMVWSRGQRRKMALENPKMHNSEISKRLGAD
120 130 140 150 160 170
90 100 110 120 130 140
pF1KB8 WKLLDEDEKRPFVEEAKRLRARHLRDYPDYKYRPRRKAKS-----SGAGPSRCGQGRGNL
:::: . :::::..::::::: :...:::::::::::.:. . . :: :
NP_005 WKLLTDAEKRPFIDEAKRLRAVHMKEYPDYKYRPRRKTKTLLKKDKYSLPSGL-LPPGAA
180 190 200 210 220 230
150 160 170 180 190
pF1KB8 ASGGPLWGPGYATTQPSRGFGYRPPSYS--TAYLPGSYGSSHCKLEAPSPCSLPQSDPRL
:... . . :...: : : : .:. ... :.:. . .: .: :. :.:
NP_005 AAAAAAAAAAAAASSPV-GVGQRLDTYTHVNGWANGAYSLVQEQLGYAQPPSM--SSPPP
240 250 260 270 280 290
200 210 220 230
pF1KB8 QGELLPTYTHYLPPGSPTPYNPPLAGAPMPLTHL
: : . . . . .:. :: : . :
NP_005 PPALPPMHRYDMAGLQYSPMMPPGAQSYMNVAAAAAAASGYGGMAPSATAAAAAAYGQQP
300 310 320 330 340 350
>>NP_003097 (OMIM: 184429,189960,206900) transcription f (317 aa)
initn: 477 init1: 458 opt: 499 Z-score: 368.3 bits: 75.9 E(85289): 8.9e-14
Smith-Waterman score: 499; 43.9% identity (64.5% similar) in 214 aa overlap (28-227:13-221)
10 20 30 40 50
pF1KB8 MALPGSSQDQAWSLEPPAATAAASSSSGPQEREGAG----SPAAPG----TLPLEKVKRP
:::. :.: . :: : . : ..::::
NP_003 MYNMMETELKPPGPQQTSGGGGGNSTAAAAGGNQKNSP-DRVKRP
10 20 30 40
60 70 80 90 100 110
pF1KB8 MNAFMVWSSAQRRQMAQQNPKMHNSEISKRLGAQWKLLDEDEKRPFVEEAKRLRARHLRD
:::::::: .:::.:::.:::::::::::::::.::::.: :::::..::::::: :...
NP_003 MNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKE
50 60 70 80 90 100
120 130 140 150 160
pF1KB8 YPDYKYRPRRKAKSSGAGPSRCGQGRGNLASGGPLWGPGYATTQP-SRGFGYRPPSYS--
.::::::::::.:. . : : :: :: . : .. . : . : ::.
NP_003 HPDYKYRPRRKTKTLMKKDKYTLPG-GLLAPGGNSMASGVGVGAGLGAGVNQRMDSYAHM
110 120 130 140 150 160
170 180 190 200 210 220
pF1KB8 TAYLPGSYGSSHCKLEAPSPCSLPQSDPRLQGELLPTYTH---YLPPGSPTPYNPPLAGA
... :::. . .: :. : . . ... : . . : .: : . . :.
NP_003 NGWSNGSYSMMQDQLGYPQH---PGLNAHGAAQMQPMHRYDVSALQYNSMTSSQTYMNGS
170 180 190 200 210 220
230
pF1KB8 PMPLTHL
:
NP_003 PTYSMSYSQQGTPGMALGSMGSVVKSEASSSPPVVTSSSHSRAPCQAGDLRDMISMYLPG
230 240 250 260 270 280
>>NP_005977 (OMIM: 602148) transcription factor SOX-1 [H (391 aa)
initn: 476 init1: 446 opt: 485 Z-score: 357.4 bits: 74.2 E(85289): 3.6e-13
Smith-Waterman score: 495; 39.8% identity (59.8% similar) in 246 aa overlap (14-228:10-246)
10 20 30 40 50
pF1KB8 MALPGSSQDQAWSLEPPAATAAASSSSGPQEREGAGSPAAPG------TLPLEKVKRPMN
:. :... : .. ::: :.:. .. : ..::::::
NP_005 MYSMMMETDLHSPGGAQAPTNLSGPAGAGGGGGGGGGGGGGGGAKANQDRVKRPMN
10 20 30 40 50
60 70 80 90 100 110
pF1KB8 AFMVWSSAQRRQMAQQNPKMHNSEISKRLGAQWKLLDEDEKRPFVEEAKRLRARHLRDYP
:::::: .:::.:::.:::::::::::::::.::...: :::::..::::::: :....:
NP_005 AFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKVMSEAEKRPFIDEAKRLRALHMKEHP
60 70 80 90 100 110
120 130 140 150
pF1KB8 DYKYRPRRKAKS---------------SGAGPSRC------GQGRGNLASGGPLWGPGYA
:::::::::.:. .::: . : : : : : : .:: :
NP_005 DYKYRPRRKTKTLLKKDKYSLAGGLLAAGAGGGGAAVAMGVGVGVGAAAVGQRLESPGGA
120 130 140 150 160 170
160 170 180 190 200 210
pF1KB8 TTQPSRGFGY-RPPSYSTAYLPGSYGSSHCKLEAPSPCSLPQSDPRLQGELLPTYTHYLP
. : :: . ..... ::: ... . .: .. : : ..:
NP_005 A-----GGGYAHVNGWANGAYPGSVAAAAAAAAMMQEAQLAYGQHPGAGGAHP-HAH---
180 190 200 210 220
220 230
pF1KB8 PGSPTPYNP---PLAGAPMPLTHL
:. : :..: : ::
NP_005 PAHPHPHHPHAHPHNPQPMHRYDMGALQYSPISNSQGYMSASPSGYGGLPYGAAAAAAAA
230 240 250 260 270 280
>>NP_004180 (OMIM: 604747) transcription factor SOX-14 [ (240 aa)
initn: 465 init1: 445 opt: 474 Z-score: 352.3 bits: 72.5 E(85289): 7e-13
Smith-Waterman score: 474; 48.1% identity (71.2% similar) in 156 aa overlap (45-192:4-159)
20 30 40 50 60 70
pF1KB8 EPPAATAAASSSSGPQEREGAGSPAAPGTLPLEKVKRPMNAFMVWSSAQRRQMAQQNPKM
: ...::::::::::: .:::.:::.::::
NP_004 MSKPSDHIKRPMNAFMVWSRGQRRKMAQENPKM
10 20 30
80 90 100 110 120
pF1KB8 HNSEISKRLGAQWKLLDEDEKRPFVEEAKRLRARHLRDYPDYKYRPRRKAKS-----SGA
:::::::::::.::::.: ::::...:::::::.:....:::::::::: :. .
NP_004 HNSEISKRLGAEWKLLSEAEKRPYIDEAKRLRAQHMKEHPDYKYRPRRKPKNLLKKDRYV
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB8 GP-SRCGQGRGNLASGGPLWGPGYATTQPSRGFGYRPPSYSTAYL--PGSYGSSHCKLEA
: :. :.: :. . . : .. .. ::. . : :....:: . .
NP_004 FPLPYLGDTDPLKAAGLPVGASDGLLSAPEKARAFLPPASAPYSLLDPAQFSSSAIQKMG
100 110 120 130 140 150
190 200 210 220 230
pF1KB8 PSPCSLPQSDPRLQGELLPTYTHYLPPGSPTPYNPPLAGAPMPLTHL
: .:
NP_004 EVPHTLATGALPYASTLGYQNGAFGSLSCPSQHTHTHPSPTNPGYVVPCNCTAWSASTLQ
160 170 180 190 200 210
>>NP_009015 (OMIM: 604974) transcription factor SOX-21 [ (276 aa)
initn: 476 init1: 458 opt: 471 Z-score: 349.4 bits: 72.2 E(85289): 1e-12
Smith-Waterman score: 474; 43.6% identity (62.7% similar) in 204 aa overlap (45-226:4-202)
20 30 40 50 60 70
pF1KB8 EPPAATAAASSSSGPQEREGAGSPAAPGTLPLEKVKRPMNAFMVWSSAQRRQMAQQNPKM
:...:::::::::::: ::::.:::.::::
NP_009 MSKPVDHVKRPMNAFMVWSRAQRRKMAQENPKM
10 20 30
80 90 100 110 120
pF1KB8 HNSEISKRLGAQWKLLDEDEKRPFVEEAKRLRARHLRDYPDYKYRPRRKAKS--------
:::::::::::.:::: :.:::::..::::::: :....:::::::::: :.
NP_009 HNSEISKRLGAEWKLLTESEKRPFIDEAKRLRAMHMKEHPDYKYRPRRKPKTLLKKDKFA
40 50 60 70 80 90
130 140 150 160 170
pF1KB8 ----SGAG-------PS-RCGQGRGNLASGGPLWGPGYATTQPSRGFGYRPPSYSTAYLP
: : :. . : : :.:: . : ..: .. . . . ...:
NP_009 FPVPYGLGGVADAEHPALKAGAGLHAGAGGGLV--PESLLANPEKAAAAAAAAAARVFFP
100 110 120 130 140 150
180 190 200 210 220 230
pF1KB8 GSYGSSHCKLEAPSPCSLPQSDPRLQGEL--LPTYTHYLPPGSPTPYNPPLAGAPMPLTH
: ... : . : : : : ... . . . :: .: : : :::
NP_009 QSAAAAAAAAAAAAAGS-PYSLLDLGSKMAEISSSSSGLPYASSLGY--PTAGAGAFHGA
160 170 180 190 200
pF1KB8 L
NP_009 AAAAAAAAAAAGGHTHSHPSPGNPGYMIPCNCSAWPSPGLQPPLAYILLPGMGKPQLDPY
210 220 230 240 250 260
>>NP_060889 (OMIM: 137940,601618,607823) transcription f (384 aa)
initn: 544 init1: 403 opt: 430 Z-score: 318.9 bits: 67.0 E(85289): 5e-11
Smith-Waterman score: 431; 37.7% identity (55.2% similar) in 239 aa overlap (2-231:37-255)
10 20 30
pF1KB8 MALPGSSQDQAWSLEPPAATAAASSSSGPQE
: :.. : ::. . : :
NP_060 GYGAQDDPPARRDCAWAPGHGAAADTRGLAAGPAALAAPAAPASPPSPQRSPPRSPEPG-
10 20 30 40 50 60
40 50 60 70 80
pF1KB8 REGAGSPAAPG---TLPLEKVKRPMNAFMVWSSAQRRQMAQQNPKMHNSEISKRLGAQWK
: : :::. : . ...:::::::::.. .:...::::: .::. .:: :: ::
NP_060 RYGL-SPAGRGERQAADESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAVLSKMLGKAWK
70 80 90 100 110 120
90 100 110 120 130 140
pF1KB8 LLDEDEKRPFVEEAKRLRARHLRDYPDYKYRPRRKAKSSGAGPSRCGQGRGNLASGGPLW
:. :::::::::.:::..::::.:.:::::::: .. : . : .:: :
NP_060 ELNAAEKRPFVEEAERLRVQHLRDHPNYKYRPRRKKQARKARRLEPGLLLPGLAPPQPPP
130 140 150 160 170 180
150 160 170 180 190 200
pF1KB8 GPGYATTQPSRGFGYRPPSYSTAYLPGSYGSSHCKLEAPSPCSLPQSDPRLQGELLPTYT
: :.. .:.: :: :. : :.: : :.: : : .
NP_060 EPFPAASGSARAFRELPP----------LGAEFDGLGLPTPERSP-----LDG-LEPGEA
190 200 210 220
210 220 230
pF1KB8 HYLPP-GSPT-----PYNPPLAGAPMPLTHL
..:: ..: :. : :: :.
NP_060 AFFPPPAAPEDCALRPFRAPY--APTELSRDPGGCYGAPLAEALRTAPPAAPLAGLYYGT
230 240 250 260 270 280
>>NP_071899 (OMIM: 610928,613674) transcription factor S (414 aa)
initn: 515 init1: 378 opt: 430 Z-score: 318.5 bits: 67.1 E(85289): 5.3e-11
Smith-Waterman score: 433; 38.1% identity (59.3% similar) in 231 aa overlap (17-225:29-249)
10 20 30 40
pF1KB8 MALPGSSQDQAWSLEPPAATAAASSSSGPQEREG-----AGSPA-APG
: : . : : .. .: .:.:: : :
NP_071 MSSPDAGYASDDQSQTQSALPAVMAGLGPCPWAESLSPIGDMKVKGEAPANSGAPAGAAG
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB8 TLPLE-KVKRPMNAFMVWSSAQRRQMAQQNPKMHNSEISKRLGAQWKLLDEDEKRPFVEE
: ...:::::::::.. .:...::::: .::.:.:: :: .:: : ::::::::
NP_071 RAKGESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEE
70 80 90 100 110 120
110 120 130 140 150
pF1KB8 AKRLRARHLRDYPDYKYRPRRKAKSSG----AGPSRCGQGRGNLASGGPLWG----PGYA
:.:::..:..:.:.:::::::. . . : : .. . :. :: : : .
NP_071 AERLRVQHMQDHPNYKYRPRRRKQVKRLKRVEGGFLHGLAEPQAAALGPEGGRVAMDGLG
130 140 150 160 170 180
160 170 180 190 200
pF1KB8 TTQPSRGFGYRPPSYSTAYLPGSYGSSH--CK-LEAPS----PCSLPQSDPRLQGELLPT
: .:: :: :: .:. . :. : :: : :...: :.: . :
NP_071 LQFPEQGFPAGPP-----LLPPHMGGHYRDCQSLGAPPLDGYPLPTPDTSP-LDG-VDPD
190 200 210 220 230
210 220 230
pF1KB8 YTHYLPPGSPTPYNPPLAGAPMPLTHL
. . ..: : . : ::
NP_071 PAFF---AAPMPGDCPAAGTYSYAQVSDYAGPPEPPAGPMHPRLGPEPAGPSIPGLLAPP
240 250 260 270 280 290
>>NP_008874 (OMIM: 601947) transcription factor SOX-12 [ (315 aa)
initn: 450 init1: 392 opt: 424 Z-score: 315.8 bits: 66.2 E(85289): 7.5e-11
Smith-Waterman score: 425; 50.7% identity (68.8% similar) in 144 aa overlap (28-153:21-161)
10 20 30 40 50 60
pF1KB8 MALPGSSQDQAWSLEPPAATAAASSSSGPQEREGAGSPAAPGTLPLEKVKRPMNAFMVWS
:: : ::: :. : : ..:::::::::::
NP_008 MVQQRGARAKRDGGPPPPGPGPAE-EGAREPGWCKT-PSGHIKRPMNAFMVWS
10 20 30 40 50
70 80 90 100 110 120
pF1KB8 SAQRRQMAQQNPKMHNSEISKRLGAQWKLLDEDEKRPFVEEAKRLRARHLRDYPDYKYRP
. .::.. .: : :::.::::::: .:.::...:: :::.::.::: .:. :::::::::
NP_008 QHERRKIMDQWPDMHNAEISKRLGRRWQLLQDSEKIPFVREAERLRLKHMADYPDYKYRP
60 70 80 90 100 110
130 140 150 160
pF1KB8 RRKAKSSGA------------------GPSRCGQGRGNLASGGPLWGPGYATTQPSRGFG
:.:.:.. : ::. :.: : :.:::: : . :
NP_008 RKKSKGAPAKARPRPPGGSGGGSRLKPGPQLPGRG-GRRAAGGPLGGGAAAPEDDDEDDD
120 130 140 150 160 170
170 180 190 200 210 220
pF1KB8 YRPPSYSTAYLPGSYGSSHCKLEAPSPCSLPQSDPRLQGELLPTYTHYLPPGSPTPYNPP
NP_008 EELLEVRLVETPGRELWRMVPAGRAARGQAERAQGPSGEGAAAAAAASPTPSEDEEPEEE
180 190 200 210 220 230
>>NP_003098 (OMIM: 184430) transcription factor SOX-4 [H (474 aa)
initn: 446 init1: 396 opt: 426 Z-score: 315.0 bits: 66.6 E(85289): 8.3e-11
Smith-Waterman score: 433; 43.0% identity (67.4% similar) in 172 aa overlap (3-162:15-182)
10 20 30 40
pF1KB8 MALPGSSQDQAWSLEPPAATAAASSSSGPQEREGAGSPAAPG--TLPL
: : :.:.. .:: :.: . : : :. :. :
NP_003 MVQQTNNAENTEALLAGESSDSGAGLE---LGIASSPTPGSTASTG-GKADDPSWCKTPS
10 20 30 40 50
50 60 70 80 90 100
pF1KB8 EKVKRPMNAFMVWSSAQRRQMAQQNPKMHNSEISKRLGAQWKLLDEDEKRPFVEEAKRLR
..:::::::::::. .::.. .:.: :::.::::::: .:::: ...: ::..::.:::
NP_003 GHIKRPMNAFMVWSQIERRKIMEQSPDMHNAEISKRLGKRWKLLKDSDKIPFIREAERLR
60 70 80 90 100 110
110 120 130 140 150
pF1KB8 ARHLRDYPDYKYRPRRKAKSSGAG----------PSRCGQGRGNLASGGPLWGPGYATTQ
.:. ::::::::::.:.::..:. :.. :. :. ..:: : : ....
NP_003 LKHMADYPDYKYRPRKKVKSGNANSSSSAAASSKPGEKGDKVGGSGGGGHGGGGGGGSSN
120 130 140 150 160 170
160 170 180 190 200 210
pF1KB8 PSRGFGYRPPSYSTAYLPGSYGSSHCKLEAPSPCSLPQSDPRLQGELLPTYTHYLPPGSP
. : :
NP_003 AGGGGGGASGGGANSKPAQKKSCGSKVAGGAGGGVSKPHAKLILAGGGGGGKAAAAAAAS
180 190 200 210 220 230
233 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 02:57:45 2016 done: Mon Nov 7 02:57:47 2016
Total Scan time: 8.170 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]