Result of FASTA (omim) for
pFN21AB8893
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8893, 217 aa
1>>>pF1KB8893 217 - 217 aa - 217 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.3824+/-0.000339; mu= 10.5481+/- 0.021
mean_var=147.3835+/-31.000, 0's: 0 Z-trim(119.8): 246 B-trim: 712 in 2/54
Lambda= 0.105645
statistics sampled from 33989 (34292) to 33989 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.749), E-opt: 0.2 (0.402), width: 16
Scan time: 5.410
The best scores are: opt bits E(85289)
NP_004493 (OMIM: 142962) homeobox protein Hox-B7 [ ( 217) 1466 234.3 1.2e-61
NP_008827 (OMIM: 142950) homeobox protein Hox-A7 [ ( 230) 810 134.3 1.6e-31
XP_005257341 (OMIM: 142961) PREDICTED: homeobox pr ( 224) 472 82.8 5e-16
XP_005257340 (OMIM: 142961) PREDICTED: homeobox pr ( 224) 472 82.8 5e-16
NP_061825 (OMIM: 142961) homeobox protein Hox-B6 [ ( 224) 472 82.8 5e-16
XP_011523029 (OMIM: 142961) PREDICTED: homeobox pr ( 288) 472 82.9 5.9e-16
NP_076919 (OMIM: 142951) homeobox protein Hox-A6 [ ( 233) 455 80.2 3.1e-15
NP_710160 (OMIM: 142972) homeobox protein Hox-C6 i ( 153) 432 76.5 2.6e-14
NP_061975 (OMIM: 142952) homeobox protein Hox-A5 [ ( 270) 435 77.2 2.8e-14
NP_004494 (OMIM: 142972) homeobox protein Hox-C6 i ( 235) 432 76.7 3.5e-14
NP_002138 (OMIM: 142960) homeobox protein Hox-B5 [ ( 269) 423 75.4 1e-13
XP_005257343 (OMIM: 142963) PREDICTED: homeobox pr ( 242) 420 74.9 1.3e-13
NP_073149 (OMIM: 142970) homeobox protein Hox-C8 [ ( 242) 417 74.4 1.8e-13
NP_001186675 (OMIM: 142985) homeobox protein Hox-D ( 289) 418 74.7 1.8e-13
NP_076921 (OMIM: 142963) homeobox protein Hox-B8 [ ( 243) 410 73.4 3.7e-13
XP_016880053 (OMIM: 142963) PREDICTED: homeobox pr ( 243) 410 73.4 3.7e-13
NP_062458 (OMIM: 142985) homeobox protein Hox-D8 i ( 290) 406 72.8 6.3e-13
NP_001186676 (OMIM: 142985) homeobox protein Hox-D ( 106) 393 70.4 1.3e-12
NP_061826 (OMIM: 142973) homeobox protein Hox-C5 [ ( 222) 396 71.2 1.5e-12
NP_055436 (OMIM: 142981) homeobox protein Hox-D4 [ ( 255) 391 70.5 2.8e-12
NP_055435 (OMIM: 142974) homeobox protein Hox-C4 [ ( 264) 376 68.2 1.4e-11
NP_705897 (OMIM: 142974) homeobox protein Hox-C4 [ ( 264) 376 68.2 1.4e-11
NP_002132 (OMIM: 142953) homeobox protein Hox-A4 [ ( 320) 366 66.8 4.6e-11
NP_076920 (OMIM: 142965) homeobox protein Hox-B4 [ ( 251) 362 66.1 6e-11
NP_006726 (OMIM: 604685,612290) homeobox protein H ( 376) 312 58.6 1.5e-08
NP_076922 (OMIM: 142964) homeobox protein Hox-B9 [ ( 250) 306 57.5 2.2e-08
NP_005915 (OMIM: 600535) homeobox protein MOX-2 [H ( 304) 307 57.8 2.3e-08
NP_008828 (OMIM: 142971) homeobox protein Hox-C9 [ ( 260) 304 57.2 2.8e-08
XP_005246566 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 307 57.9 2.9e-08
NP_008829 (OMIM: 142980) homeobox protein Hox-D3 [ ( 432) 307 57.9 2.9e-08
XP_011509367 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 307 57.9 2.9e-08
XP_006712540 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 307 57.9 2.9e-08
XP_005246570 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 307 57.9 2.9e-08
XP_011509368 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 307 57.9 2.9e-08
XP_005246567 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 307 57.9 2.9e-08
XP_005246568 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 307 57.9 2.9e-08
NP_005506 (OMIM: 142994,176450) motor neuron and p ( 401) 305 57.6 3.4e-08
NP_002135 (OMIM: 142968,614744) homeobox protein H ( 301) 299 56.6 5.3e-08
NP_000200 (OMIM: 125853,260370,600733,606176,60639 ( 283) 297 56.2 6.2e-08
NP_055028 (OMIM: 142982) homeobox protein Hox-D9 [ ( 352) 295 56.0 8.9e-08
NP_001317252 (OMIM: 142966) homeobox protein Hox-B ( 299) 287 54.7 1.9e-07
NP_109377 (OMIM: 142954) homeobox protein Hox-A3 i ( 443) 289 55.2 2e-07
XP_006715778 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 289 55.2 2e-07
XP_011513645 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 289 55.2 2e-07
XP_005249788 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 289 55.2 2e-07
XP_005249787 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 289 55.2 2e-07
XP_005249789 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 289 55.2 2e-07
NP_705895 (OMIM: 142954) homeobox protein Hox-A3 i ( 443) 289 55.2 2e-07
NP_001317251 (OMIM: 142966) homeobox protein Hox-B ( 358) 287 54.8 2.1e-07
XP_011523028 (OMIM: 142966) PREDICTED: homeobox pr ( 358) 287 54.8 2.1e-07
>>NP_004493 (OMIM: 142962) homeobox protein Hox-B7 [Homo (217 aa)
initn: 1466 init1: 1466 opt: 1466 Z-score: 1227.7 bits: 234.3 E(85289): 1.2e-61
Smith-Waterman score: 1466; 99.5% identity (100.0% similar) in 217 aa overlap (1-217:1-217)
10 20 30 40 50 60
pF1KB8 MSSLYYANALFSKYPASSSVFATGAFPEQTSCAFASNPQRPGYGAGSGASFAASMQGLYP
::::::::.:::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MSSLYYANTLFSKYPASSSVFATGAFPEQTSCAFASNPQRPGYGAGSGASFAASMQGLYP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 GGGGMAGQSAAGVYAAGYGLEPSSFNMHCAPFEQNLSGVCPGDSAKAAGAKEQRDSDLAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 GGGGMAGQSAAGVYAAGYGLEPSSFNMHCAPFEQNLSGVCPGDSAKAAGAKEQRDSDLAA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 ESNFRIYPWMRSSGTDRKRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHTLCLTERQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 ESNFRIYPWMRSSGTDRKRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHTLCLTERQ
130 140 150 160 170 180
190 200 210
pF1KB8 IKIWFQNRRMKWKKENKTAGPGTTGQDRAEAEEEEEE
:::::::::::::::::::::::::::::::::::::
NP_004 IKIWFQNRRMKWKKENKTAGPGTTGQDRAEAEEEEEE
190 200 210
>>NP_008827 (OMIM: 142950) homeobox protein Hox-A7 [Homo (230 aa)
initn: 791 init1: 586 opt: 810 Z-score: 687.0 bits: 134.3 E(85289): 1.6e-31
Smith-Waterman score: 817; 58.8% identity (76.4% similar) in 233 aa overlap (1-217:1-224)
10 20 30 40 50 60
pF1KB8 MSSLYYANALFSKYPASSSVFATGAFPEQTSCAFASNPQRPGYGAGSGASFAASMQGLYP
::: ::.::::::: :..:.: .. : :::.:: : :: :::::.:: ::... :::
NP_008 MSSSYYVNALFSKYTAGASLFQNA---EPTSCSFAPNSQRSGYGAGAGA-FASTVPGLYN
10 20 30 40 50
70 80 90 100 110
pF1KB8 GGGGMAGQSAAGVYAAGYGLEPSSF-NMHCAPFEQNLSGVCPGDSAKAAGAKEQRDS-DL
.. . :: .:.:::: ... :. :: ..::. :.: .: ::.: : .. .
NP_008 VNSPLY-QSP---FASGYGLGADAYGNLPCASYDQNIPGLC-SDLAKGACDKTDEGALHG
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB8 AAESNFRIYPWMRSSGTDRKRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHTLCLTE
:::.:::::::::::: ::::::::::::::::::::::.::::::::::::::.:::::
NP_008 AAEANFRIYPWMRSSGPDRKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTE
120 130 140 150 160 170
180 190 200 210
pF1KB8 RQIKIWFQNRRMKWKKENKTAGP--------------GTTGQDRAEAEEEEEE
:::::::::::::::::.: :: .:.. :.:. :...::
NP_008 RQIKIWFQNRRMKWKKEHKDEGPTAAAAPEGAVPSAAATAAADKADEEDDDEEEEDEEE
180 190 200 210 220 230
>>XP_005257341 (OMIM: 142961) PREDICTED: homeobox protei (224 aa)
initn: 481 init1: 393 opt: 472 Z-score: 408.8 bits: 82.8 E(85289): 5e-16
Smith-Waterman score: 505; 45.1% identity (63.4% similar) in 235 aa overlap (1-216:1-222)
10 20 30 40 50
pF1KB8 MSSLYYANALFSKYPASSSVFATGAFPEQTSCAFASNPQR--PG-YGAGSGASFAASMQG
::: :..:. : ::.. : .: .: ..: .: : :. :: : : . . . ..
XP_005 MSS-YFVNSTFPVTLASGQESFLGQLPLYSS-GYA-DPLRHYPAPYGPGPGQDKGFATSS
10 20 30 40 50
60 70 80 90 100
pF1KB8 LYPGGGGMAGQSAA---GVYAAGYGLEPSSFNMHCA----PFE-QNLSGVCPGDSAKAAG
:: .:: :..: : : : . :. . : ::. . .. : :.. .
XP_005 YYPPAGGGYGRAAPCDYGPAPAFYREKESACALSGADEQPPFHPEPRKSDCAQDKSVFGE
60 70 80 90 100 110
110 120 130 140 150 160
pF1KB8 AKEQRDSDLAAESNFRIYPWMR--------SSGTDRKRGRQTYTRYQTLELEKEFHYNRY
..::. : .::::. : : . .:::::::::::::::::::::::
XP_005 TEEQKCST-------PVYPWMQRMNSCNSSSFGPSGRRGRQTYTRYQTLELEKEFHYNRY
120 130 140 150 160 170
170 180 190 200 210
pF1KB8 LTRRRRIEIAHTLCLTERQIKIWFQNRRMKWKKENKTAGPGTTGQDRAEAEEEEEE
:::::::::::.::::::::::::::::::::::.: ...: :: :::..
XP_005 LTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKESKLL---SASQLSAEEEEEKQAE
180 190 200 210 220
>>XP_005257340 (OMIM: 142961) PREDICTED: homeobox protei (224 aa)
initn: 481 init1: 393 opt: 472 Z-score: 408.8 bits: 82.8 E(85289): 5e-16
Smith-Waterman score: 505; 45.1% identity (63.4% similar) in 235 aa overlap (1-216:1-222)
10 20 30 40 50
pF1KB8 MSSLYYANALFSKYPASSSVFATGAFPEQTSCAFASNPQR--PG-YGAGSGASFAASMQG
::: :..:. : ::.. : .: .: ..: .: : :. :: : : . . . ..
XP_005 MSS-YFVNSTFPVTLASGQESFLGQLPLYSS-GYA-DPLRHYPAPYGPGPGQDKGFATSS
10 20 30 40 50
60 70 80 90 100
pF1KB8 LYPGGGGMAGQSAA---GVYAAGYGLEPSSFNMHCA----PFE-QNLSGVCPGDSAKAAG
:: .:: :..: : : : . :. . : ::. . .. : :.. .
XP_005 YYPPAGGGYGRAAPCDYGPAPAFYREKESACALSGADEQPPFHPEPRKSDCAQDKSVFGE
60 70 80 90 100 110
110 120 130 140 150 160
pF1KB8 AKEQRDSDLAAESNFRIYPWMR--------SSGTDRKRGRQTYTRYQTLELEKEFHYNRY
..::. : .::::. : : . .:::::::::::::::::::::::
XP_005 TEEQKCST-------PVYPWMQRMNSCNSSSFGPSGRRGRQTYTRYQTLELEKEFHYNRY
120 130 140 150 160 170
170 180 190 200 210
pF1KB8 LTRRRRIEIAHTLCLTERQIKIWFQNRRMKWKKENKTAGPGTTGQDRAEAEEEEEE
:::::::::::.::::::::::::::::::::::.: ...: :: :::..
XP_005 LTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKESKLL---SASQLSAEEEEEKQAE
180 190 200 210 220
>>NP_061825 (OMIM: 142961) homeobox protein Hox-B6 [Homo (224 aa)
initn: 481 init1: 393 opt: 472 Z-score: 408.8 bits: 82.8 E(85289): 5e-16
Smith-Waterman score: 505; 45.1% identity (63.4% similar) in 235 aa overlap (1-216:1-222)
10 20 30 40 50
pF1KB8 MSSLYYANALFSKYPASSSVFATGAFPEQTSCAFASNPQR--PG-YGAGSGASFAASMQG
::: :..:. : ::.. : .: .: ..: .: : :. :: : : . . . ..
NP_061 MSS-YFVNSTFPVTLASGQESFLGQLPLYSS-GYA-DPLRHYPAPYGPGPGQDKGFATSS
10 20 30 40 50
60 70 80 90 100
pF1KB8 LYPGGGGMAGQSAA---GVYAAGYGLEPSSFNMHCA----PFE-QNLSGVCPGDSAKAAG
:: .:: :..: : : : . :. . : ::. . .. : :.. .
NP_061 YYPPAGGGYGRAAPCDYGPAPAFYREKESACALSGADEQPPFHPEPRKSDCAQDKSVFGE
60 70 80 90 100 110
110 120 130 140 150 160
pF1KB8 AKEQRDSDLAAESNFRIYPWMR--------SSGTDRKRGRQTYTRYQTLELEKEFHYNRY
..::. : .::::. : : . .:::::::::::::::::::::::
NP_061 TEEQKCST-------PVYPWMQRMNSCNSSSFGPSGRRGRQTYTRYQTLELEKEFHYNRY
120 130 140 150 160 170
170 180 190 200 210
pF1KB8 LTRRRRIEIAHTLCLTERQIKIWFQNRRMKWKKENKTAGPGTTGQDRAEAEEEEEE
:::::::::::.::::::::::::::::::::::.: ...: :: :::..
NP_061 LTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKESKLL---SASQLSAEEEEEKQAE
180 190 200 210 220
>>XP_011523029 (OMIM: 142961) PREDICTED: homeobox protei (288 aa)
initn: 481 init1: 393 opt: 472 Z-score: 407.4 bits: 82.9 E(85289): 5.9e-16
Smith-Waterman score: 505; 45.1% identity (63.4% similar) in 235 aa overlap (1-216:65-286)
10 20 30
pF1KB8 MSSLYYANALFSKYPASSSVFATGAFPEQT
::: :..:. : ::.. : .: .
XP_011 GFNAARRSDYKTQQIINPAEQQRPRAPPLPMSS-YFVNSTFPVTLASGQESFLGQLPLYS
40 50 60 70 80 90
40 50 60 70 80
pF1KB8 SCAFASNPQR--PG-YGAGSGASFAASMQGLYPGGGGMAGQSAA---GVYAAGYGLEPSS
: ..: .: : :. :: : : . . . .. :: .:: :..: : : : . :.
XP_011 S-GYA-DPLRHYPAPYGPGPGQDKGFATSSYYPPAGGGYGRAAPCDYGPAPAFYREKESA
100 110 120 130 140 150
90 100 110 120 130
pF1KB8 FNMHCA----PFE-QNLSGVCPGDSAKAAGAKEQRDSDLAAESNFRIYPWMR--------
. : ::. . .. : :.. . ..::. : .::::.
XP_011 CALSGADEQPPFHPEPRKSDCAQDKSVFGETEEQKCST-------PVYPWMQRMNSCNSS
160 170 180 190 200
140 150 160 170 180 190
pF1KB8 SSGTDRKRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHTLCLTERQIKIWFQNRRMK
: : . .::::::::::::::::::::::::::::::::::.::::::::::::::::::
XP_011 SFGPSGRRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMK
210 220 230 240 250 260
200 210
pF1KB8 WKKENKTAGPGTTGQDRAEAEEEEEE
::::.: ...: :: :::..
XP_011 WKKESKLL---SASQLSAEEEEEKQAE
270 280
>>NP_076919 (OMIM: 142951) homeobox protein Hox-A6 [Homo (233 aa)
initn: 458 init1: 392 opt: 455 Z-score: 394.5 bits: 80.2 E(85289): 3.1e-15
Smith-Waterman score: 456; 43.3% identity (62.3% similar) in 215 aa overlap (12-215:40-233)
10 20 30
pF1KB8 MSSLYYANALFSKYPASS---SVFATGAFPEQTSCAFASNP
..: ::: ..... : .:.. ..: :
NP_076 FPGSLPSGQDSFLGQLPLYQAGYDALRPFPASYGASSLPDKTYTSPCFYQQSNSVLACNR
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB8 QRPGYGAGSGASFAASMQGLYPGGGGMAGQSAAGVYAAGYGLEPSSFNMHCAPFEQNLSG
:::. : ...: :.:.: : . : : .: .: ::. .
NP_076 ASYEYGASCFYS-DKDLSGASPSGSGK--QRGPGDY------------LHFSP-EQQYK-
70 80 90 100 110
100 110 120 130 140 150
pF1KB8 VCPGDSAKAAGAKEQRDSDLAAESNFRIYPWMRSS--------GTDRKRGRQTYTRYQTL
: ::... : : .: . . .::::. :. .::::::::::::
NP_076 --P-DSSSGQG-KALHDEGADRKYTSPVYPWMQRMNSCAGAVYGSHGRRGRQTYTRYQTL
120 130 140 150 160
160 170 180 190 200 210
pF1KB8 ELEKEFHYNRYLTRRRRIEIAHTLCLTERQIKIWFQNRRMKWKKENKTAGPGTTGQDRAE
:::::::.:::::::::::::..:::::::::::::::::::::::: . . . .:
NP_076 ELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENKLINSTQPSGEDSE
170 180 190 200 210 220
pF1KB8 AEEEEEE
:. :
NP_076 AKAGE
230
>>NP_710160 (OMIM: 142972) homeobox protein Hox-C6 isofo (153 aa)
initn: 430 init1: 383 opt: 432 Z-score: 377.8 bits: 76.5 E(85289): 2.6e-14
Smith-Waterman score: 434; 53.2% identity (71.9% similar) in 139 aa overlap (94-217:7-145)
70 80 90 100 110 120
pF1KB8 GMAGQSAAGVYAAGYGLEPSSFNMHCAPFEQNLSGVCPGDSAKAAGAKEQ-RDSDLAAES
:: : : ..:: : . ..
NP_710 MLSNCRQNTLGHNTQTSIAQDFSSEQGRTAPQDQKA
10 20 30
130 140 150 160 170
pF1KB8 NFRIYPWMR--------SSGTDRKRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHTL
...:::::. . :.::.:::: :.::::::::::::.:::::::::::::..:
NP_710 SIQIYPWMQRMNSHSGVGYGADRRRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANAL
40 50 60 70 80 90
180 190 200 210
pF1KB8 CLTERQIKIWFQNRRMKWKKENKTA------GPGTTGQDRAEAEEEEEE
:::::::::::::::::::::.. . : :.:... . ::..::
NP_710 CLTERQIKIWFQNRRMKWKKESNLTSTLSGGGGGATADSLGGKEEKREETEEEKQKE
100 110 120 130 140 150
>>NP_061975 (OMIM: 142952) homeobox protein Hox-A5 [Homo (270 aa)
initn: 442 init1: 379 opt: 435 Z-score: 377.3 bits: 77.2 E(85289): 2.8e-14
Smith-Waterman score: 438; 39.6% identity (64.5% similar) in 197 aa overlap (16-197:59-255)
10 20 30 40
pF1KB8 MSSLYYANALFSKYPASSSVFATGAFPEQTSCAFASNPQRPGYGA
..:. :..: .. . . .. : .: :.
NP_061 SVSEQFRDSASMHSGRYGYGYNGMDLSVGRSGSGHFGSGERARSYAASASAAPAEPRYSQ
30 40 50 60 70 80
50 60 70 80 90
pF1KB8 GSGASFAASMQGL-------YPGGGGMAGQSAAGVYAAGYGLEPSSFNMHCAPFEQNLSG
. .. . . . : ::. . : . . ..: . . .: .. . ::
NP_061 PATSTHSPQPDPLPCSAVAPSPGSDSHHGGKNSLSNSSGASADAGSTHISSREGVGTASG
90 100 110 120 130 140
100 110 120 130 140 150
pF1KB8 VCPGDSAKAAGAKEQRDSDLAAESNFRIYPWMRS--------SGTDRKRGRQTYTRYQTL
. :.. :. : . . : .. .::::::. .: . ::.: .:::::::
NP_061 AEEDAPASSEQASAQSEPSPAPPAQPQIYPWMRKLHISHDNIGGPEGKRARTAYTRYQTL
150 160 170 180 190 200
160 170 180 190 200 210
pF1KB8 ELEKEFHYNRYLTRRRRIEIAHTLCLTERQIKIWFQNRRMKWKKENKTAGPGTTGQDRAE
:::::::.::::::::::::::.:::.:::::::::::::::::.::
NP_061 ELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNKLKSMSMAAAGGAF
210 220 230 240 250 260
pF1KB8 AEEEEEE
NP_061 RP
270
>>NP_004494 (OMIM: 142972) homeobox protein Hox-C6 isofo (235 aa)
initn: 415 init1: 383 opt: 432 Z-score: 375.6 bits: 76.7 E(85289): 3.5e-14
Smith-Waterman score: 449; 41.1% identity (63.2% similar) in 231 aa overlap (8-217:2-227)
10 20 30 40 50
pF1KB8 MSSLYYANALFSKYPASSSVFATG--AFPEQTSCAFASNPQR--PGYGAGSGASFAASMQ
:. :.. :. : .: : ..:. . . : .: : :::. . . :
NP_004 MNSYFTN-PSLSCHLAGGQDVLPNVALNSTAYDPVRHFSTYGAAVAQNRIYSTP
10 20 30 40 50
60 70 80 90 100 110
pF1KB8 GLYPGGGGMAGQSAAGVYAAGYGLEPSSFNM--HCAPFEQNLSGVCPGDSAKAAGAKEQ-
.: ... .:. : : : . . .: .: .:: : : ..::
NP_004 -FYSPQENVVFSSSRGPYDYGSNSFYQEKDMLSNC---RQNTLGHNTQTSIAQDFSSEQG
60 70 80 90 100
120 130 140 150 160
pF1KB8 RDSDLAAESNFRIYPWMR--------SSGTDRKRGRQTYTRYQTLELEKEFHYNRYLTRR
: . .....:::::. . :.::.:::: :.::::::::::::.:::::::
NP_004 RTAPQDQKASIQIYPWMQRMNSHSGVGYGADRRRGRQIYSRYQTLELEKEFHFNRYLTRR
110 120 130 140 150 160
170 180 190 200 210
pF1KB8 RRIEIAHTLCLTERQIKIWFQNRRMKWKKENKTA------GPGTTGQDRAEAEEEEEE
::::::..::::::::::::::::::::::.. . : :.:... . ::..::
NP_004 RRIEIANALCLTERQIKIWFQNRRMKWKKESNLTSTLSGGGGGATADSLGGKEEKREETE
170 180 190 200 210 220
NP_004 EEKQKE
230
217 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 23:20:58 2016 done: Mon Nov 7 23:20:58 2016
Total Scan time: 5.410 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]