FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8888, 201 aa
  1>>>pF1KB8888 201 - 201 aa - 201 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.6689+/-0.000668; mu= 6.6744+/- 0.041
 mean_var=191.9310+/-38.136, 0's: 0 Z-trim(118.2): 41  B-trim: 0 in 0/56
 Lambda= 0.092577
 statistics sampled from 19086 (19130) to 19086 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.847), E-opt: 0.2 (0.588), width:  16
 Scan time:  2.210

The best scores are:                                      opt bits E(32554)
CCDS43779.1 SCX gene_id:642658|Hs108|chr8          ( 201) 1405 198.2 2.8e-51
CCDS33432.1 TCF15 gene_id:6939|Hs108|chr20         ( 199)  516 79.5 1.5e-15


>>CCDS43779.1 SCX gene_id:642658|Hs108|chr8               (201 aa)
 initn: 1405 init1: 1405 opt: 1405  Z-score: 1034.1  bits: 198.2 E(32554): 2.8e-51
Smith-Waterman score: 1405; 100.0% identity (100.0% similar) in 201 aa overlap (1-201:1-201)

               10        20        30        40        50        60
pF1KB8 MSFATLRPAPPGRYLYPEVSPLSEDEDRGSDSSGSDEKPCRVHAARCGLQGARRRAGGRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MSFATLRPAPPGRYLYPEVSPLSEDEDRGSDSSGSDEKPCRVHAARCGLQGARRRAGGRR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 AGGGGPGGRPGREPRQRHTANARERDRTNSVNTAFTALRTLIPTEPADRKLSKIETLRLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 AGGGGPGGRPGREPRQRHTANARERDRTNSVNTAFTALRTLIPTEPADRKLSKIETLRLA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 SSYISHLGNVLLAGEACGDGQPCHSGPAFFHAARAGSPPPPPPPPPARDGENTQPKQICT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 SSYISHLGNVLLAGEACGDGQPCHSGPAFFHAARAGSPPPPPPPPPARDGENTQPKQICT
              130       140       150       160       170       180

              190       200 
pF1KB8 FCLSNQRKLSKDRDRKTAIRS
       :::::::::::::::::::::
CCDS43 FCLSNQRKLSKDRDRKTAIRS
              190       200 

>>CCDS33432.1 TCF15 gene_id:6939|Hs108|chr20              (199 aa)
 initn: 509 init1: 409 opt: 516  Z-score: 392.5  bits: 79.5 E(32554): 1.5e-15
Smith-Waterman score: 612; 58.8% identity (73.4% similar) in 199 aa overlap (1-194:1-180)

               10        20        30         40         50        
pF1KB8 MSFATLRPAPPGRYLYPEVSPLSEDEDRGSDSSGSDEK-PCRVHAARC-GLQGARRR---
       :.:: :::.  .. :::.:  :::::.  :.:..::..  :      : : ..:::    
CCDS33 MAFALLRPVG-AHVLYPDVRLLSEDEENRSESDASDQSFGC------CEGPEAARRGPGP
               10         20        30        40              50   

          60        70        80        90       100       110     
pF1KB8 AGGRRAGGGGPGGRPGREPRQRHTANARERDRTNSVNTAFTALRTLIPTEPADRKLSKIE
       .::::::::: .: :    :::..:::::::::.:::::::::::::::::.::::::::
CCDS33 GGGRRAGGGGGAG-PVVVVRQRQAANARERDRTQSVNTAFTALRTLIPTEPVDRKLSKIE
            60         70        80        90       100       110  

         120       130       140       150       160       170     
pF1KB8 TLRLASSYISHLGNVLLAGEACGDGQPCHSGPAFFHAARAGSPPPPPPPPPARDGENTQP
       :.:::::::.::.:::: :..  :::::      :.::  ::     :   : :: . ::
CCDS33 TVRLASSYIAHLANVLLLGDSADDGQPC------FRAA--GSAKGAVPA--AADG-GRQP
            120       130       140               150          160 

         180       190       200             
pF1KB8 KQICTFCLSNQRKLSKDRDRKTAIRS            
       ..::::::::::: .  ::                   
CCDS33 RSICTFCLSNQRKGGGRRDLGGSCLKVRGVAPLRGPRR
             170       180       190         




201 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 04:48:50 2016 done: Tue Nov  8 04:48:50 2016
 Total Scan time:  2.210 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]