FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8883, 184 aa
  1>>>pF1KB8883 184 - 184 aa - 184 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.5933+/-0.000733; mu= 6.2023+/- 0.045
 mean_var=229.2550+/-47.163, 0's: 0 Z-trim(117.6): 170  B-trim: 6 in 1/52
 Lambda= 0.084706
 statistics sampled from 18136 (18327) to 18136 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.848), E-opt: 0.2 (0.563), width:  16
 Scan time:  2.440

The best scores are:                                      opt bits E(32554)
CCDS12112.1 RAX2 gene_id:84839|Hs108|chr19         ( 184) 1287 168.4 2.2e-42
CCDS11972.1 RAX gene_id:30062|Hs108|chr18          ( 346)  535 76.8 1.6e-14


>>CCDS12112.1 RAX2 gene_id:84839|Hs108|chr19              (184 aa)
 initn: 1287 init1: 1287 opt: 1287  Z-score: 874.2  bits: 168.4 E(32554): 2.2e-42
Smith-Waterman score: 1287; 100.0% identity (100.0% similar) in 184 aa overlap (1-184:1-184)

               10        20        30        40        50        60
pF1KB8 MFLSPGEGPATEGGGLGPGEEAPKKKHRRNRTTFTTYQLHQLERAFEASHYPDVYSREEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MFLSPGEGPATEGGGLGPGEEAPKKKHRRNRTTFTTYQLHQLERAFEASHYPDVYSREEL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 AAKVHLPEVRVQVWFQNRRAKWRRQERLESGSGAVAAPRLPEAPALPFARPPAMSLPLEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 AAKVHLPEVRVQVWFQNRRAKWRRQERLESGSGAVAAPRLPEAPALPFARPPAMSLPLEP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 WLGPGPPAVPGLPRLLGPGPGLQASFGPHAFAPTFADGFALEEASLRLLAKEHAQALDRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 WLGPGPPAVPGLPRLLGPGPGLQASFGPHAFAPTFADGFALEEASLRLLAKEHAQALDRA
              130       140       150       160       170       180

           
pF1KB8 WPPA
       ::::
CCDS12 WPPA
           

>>CCDS11972.1 RAX gene_id:30062|Hs108|chr18               (346 aa)
 initn: 664 init1: 444 opt: 535  Z-score: 374.4  bits: 76.8 E(32554): 1.6e-14
Smith-Waterman score: 550; 55.6% identity (66.9% similar) in 178 aa overlap (4-155:112-283)

                                            10        20        30 
pF1KB8                            MFLSPGE--GPATEGGGLGPGEEAPKKKHRRNR
                                     :::   ::::  . :.  :: :::::::::
CCDS11 EPSPPPAPAPAPEYEAPRPYCPKEPGEARPSPGLPVGPATGEAKLSE-EEQPKKKHRRNR
              90       100       110       120        130       140

              40        50        60        70        80        90 
pF1KB8 TTFTTYQLHQLERAFEASHYPDVYSREELAAKVHLPEVRVQVWFQNRRAKWRRQERLESG
       :::::::::.:::::: :::::::::::::.::.:::::::::::::::::::::.::  
CCDS11 TTFTTYQLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQNRRAKWRRQEKLE--
              150       160       170       180       190          

             100       110                          120            
pF1KB8 SGAVAAPRLPEAPALPFAR-PPAMSL------------------PLEPWLGP-----GPP
          :.. .: ..: : :.: ::. .:                  ::: ::::     :  
CCDS11 ---VSSMKLQDSPLLSFSRSPPSATLSPLGAGPGSGGGPAGGALPLESWLGPPLPGGGAT
         200       210       220       230       240       250     

       130       140       150       160       170       180       
pF1KB8 AVPGLPRLLGPGPGLQASFGPHAFAPTFADGFALEEASLRLLAKEHAQALDRAWPPA   
       :. .:: .  :. .: ::. :    : :                                
CCDS11 ALQSLPGFGPPAQSLPASYTPPPPPPPFLNSPPLGPGLQPLAPPPPSYPCGPGFGDKFPL
         260       270       280       290       300       310     




184 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 04:20:31 2016 done: Tue Nov  8 04:20:32 2016
 Total Scan time:  2.440 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]