FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8821, 384 aa
  1>>>pF1KB8821 384 - 384 aa - 384 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8121+/-0.000672; mu= 18.1166+/- 0.041
 mean_var=129.9885+/-29.023, 0's: 0 Z-trim(114.9): 34  B-trim: 820 in 1/49
 Lambda= 0.112492
 statistics sampled from 15407 (15440) to 15407 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.778), E-opt: 0.2 (0.474), width:  16
 Scan time:  3.350

The best scores are:                                      opt bits E(32554)
CCDS772.1 GPR88 gene_id:54112|Hs108|chr1           ( 384) 2560 426.0 2.8e-119


>>CCDS772.1 GPR88 gene_id:54112|Hs108|chr1                (384 aa)
 initn: 2560 init1: 2560 opt: 2560  Z-score: 2255.0  bits: 426.0 E(32554): 2.8e-119
Smith-Waterman score: 2560; 99.7% identity (100.0% similar) in 384 aa overlap (1-384:1-384)

               10        20        30        40        50        60
pF1KB8 MTNSSSTSTSSTTGGSLLLLCEEEESWAGRRIPVSLLYSGLAIGGTLANGMVIYLVSSFR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 MTNSSSTSTSSTTGGSLLLLCEEEESWAGRRIPVSLLYSGLAIGGTLANGMVIYLVSSFR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 KLQTTSNAFIVNGCAADLSVCALWMPQEAVLGLLPTGSAEPPADWDGAGGSYRLLRGGLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 KLQTTSNAFIVNGCAADLSVCALWMPQEAVLGLLPTGSAEPPADWDGAGGSYRLLRGGLL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 GLGLTVSLLSHCLVALNRYLLITRAPATYQALYQRRHTAGMLALSWALALGLVLLLPPWA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 GLGLTVSLLSHCLVALNRYLLITRAPATYQALYQRRHTAGMLALSWALALGLVLLLPPWA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 PRPGAAPPRIHYPALLAAAALLAQTALLLHCYLGIVRRVRVSVKRVSVLNFHLLHQLPGC
       :::::::::.::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 PRPGAAPPRVHYPALLAAAALLAQTALLLHCYLGIVRRVRVSVKRVSVLNFHLLHQLPGC
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 AAAAAAFPGAQHAPGPGGAAHPAQAQPLPPALHPRRAQRRLSGLSVLLLCCVFLLATQPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 AAAAAAFPGAQHAPGPGGAAHPAQAQPLPPALHPRRAQRRLSGLSVLLLCCVFLLATQPL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 VWVSLASGFSLPVPWGVQAASWLLCCALSALNPLLYTWRNEEFRRSVRSVLPGVGDAAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 VWVSLASGFSLPVPWGVQAASWLLCCALSALNPLLYTWRNEEFRRSVRSVLPGVGDAAAA
              310       320       330       340       350       360

              370       380    
pF1KB8 AVAATAVPAVSQAQLGTRAAGQHW
       ::::::::::::::::::::::::
CCDS77 AVAATAVPAVSQAQLGTRAAGQHW
              370       380    




384 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 19:01:28 2016 done: Sun Nov  6 19:01:29 2016
 Total Scan time:  3.350 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]