FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8542, 900 aa
  1>>>pF1KB8542 900 - 900 aa - 900 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.3472+/-0.000916; mu= 16.3636+/- 0.055
 mean_var=92.8078+/-18.640, 0's: 0 Z-trim(108.1): 28  B-trim: 0 in 0/51
 Lambda= 0.133132
 statistics sampled from 9963 (9985) to 9963 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.673), E-opt: 0.2 (0.307), width:  16
 Scan time:  4.330

The best scores are:                                      opt bits E(32554)
CCDS8942.1 MARS gene_id:4141|Hs108|chr12           ( 900) 6092 1180.8       0


>>CCDS8942.1 MARS gene_id:4141|Hs108|chr12                (900 aa)
 initn: 6092 init1: 6092 opt: 6092  Z-score: 6321.1  bits: 1180.8 E(32554):    0
Smith-Waterman score: 6092; 100.0% identity (100.0% similar) in 900 aa overlap (1-900:1-900)

               10        20        30        40        50        60
pF1KB8 MRLFVSDGVPGCLPVLAAAGRARGRAEVLISTVGPEDCVVPFLTRPKVPVLQLDSGNYLF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 MRLFVSDGVPGCLPVLAAAGRARGRAEVLISTVGPEDCVVPFLTRPKVPVLQLDSGNYLF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 STSAICRYFFLLSGWEQDDLTNQWLEWEATELQPALSAALYYLVVQGKKGEDVLGSVRRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 STSAICRYFFLLSGWEQDDLTNQWLEWEATELQPALSAALYYLVVQGKKGEDVLGSVRRA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 LTHIDHSLSRQNCPFLAGETESLADIVLWGALYPLLQDPAYLPEELSALHSWFQTLSTQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 LTHIDHSLSRQNCPFLAGETESLADIVLWGALYPLLQDPAYLPEELSALHSWFQTLSTQE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 PCQRAAETVLKQQGVLALRPYLQKQPQPSPAEGRAVTNEPEEEELATLSEEEIAMAVTAW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 PCQRAAETVLKQQGVLALRPYLQKQPQPSPAEGRAVTNEPEEEELATLSEEEIAMAVTAW
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 EKGLESLPPLRPQQNPVLPVAGERNVLITSALPYVNNVPHLGNIIGCVLSADVFARYSRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 EKGLESLPPLRPQQNPVLPVAGERNVLITSALPYVNNVPHLGNIIGCVLSADVFARYSRL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 RQWNTLYLCGTDEYGTATETKALEEGLTPQEICDKYHIIHADIYRWFNISFDIFGRTTTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 RQWNTLYLCGTDEYGTATETKALEEGLTPQEICDKYHIIHADIYRWFNISFDIFGRTTTP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 QQTKITQDIFQQLLKRGFVLQDTVEQLRCEHCARFLADRFVEGVCPFCGYEEARGDQCDK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 QQTKITQDIFQQLLKRGFVLQDTVEQLRCEHCARFLADRFVEGVCPFCGYEEARGDQCDK
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB8 CGKLINAVELKKPQCKVCRSCPVVQSSQHLFLDLPKLEKRLEEWLGRTLPGSDWTPNAQF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 CGKLINAVELKKPQCKVCRSCPVVQSSQHLFLDLPKLEKRLEEWLGRTLPGSDWTPNAQF
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB8 ITRSWLRDGLKPRCITRDLKWGTPVPLEGFEDKVFYVWFDATIGYLSITANYTDQWERWW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 ITRSWLRDGLKPRCITRDLKWGTPVPLEGFEDKVFYVWFDATIGYLSITANYTDQWERWW
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB8 KNPEQVDLYQFMAKDNVPFHSLVFPCSALGAEDNYTLVSHLIATEYLNYEDGKFSKSRGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 KNPEQVDLYQFMAKDNVPFHSLVFPCSALGAEDNYTLVSHLIATEYLNYEDGKFSKSRGV
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB8 GVFGDMAQDTGIPADIWRFYLLYIRPEGQDSAFSWTDLLLKNNSELLNNLGNFINRAGMF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 GVFGDMAQDTGIPADIWRFYLLYIRPEGQDSAFSWTDLLLKNNSELLNNLGNFINRAGMF
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB8 VSKFFGGYVPEMVLTPDDQRLLAHVTLELQHYHQLLEKVRIRDALRSILTISRHGNQYIQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 VSKFFGGYVPEMVLTPDDQRLLAHVTLELQHYHQLLEKVRIRDALRSILTISRHGNQYIQ
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KB8 VNEPWKRIKGSEADRQRAGTVTGLAVNIAALLSVMLQPYMPTVSATIQAQLQLPPPACSI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 VNEPWKRIKGSEADRQRAGTVTGLAVNIAALLSVMLQPYMPTVSATIQAQLQLPPPACSI
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KB8 LLTNFLCTLPAGHQIGTVSPLFQKLENDQIESLRQRFGGGQAKTSPKPAVVETVTTAKPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 LLTNFLCTLPAGHQIGTVSPLFQKLENDQIESLRQRFGGGQAKTSPKPAVVETVTTAKPQ
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KB8 QIQALMDEVTKQGNIVRELKAQKADKNEVAAEVAKLLDLKKQLAVAEGKPPEAPKGKKKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 QIQALMDEVTKQGNIVRELKAQKADKNEVAAEVAKLLDLKKQLAVAEGKPPEAPKGKKKK
              850       860       870       880       890       900




900 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 14:48:20 2016 done: Sun Nov  6 14:48:21 2016
 Total Scan time:  4.330 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]