Result of FASTA (ccds) for
pFN21AB8519
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8519, 953 aa
1>>>pF1KB8519 953 - 953 aa - 953 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.3249+/-0.00109; mu= 7.0952+/- 0.066
mean_var=146.2325+/-28.402, 0's: 0 Z-trim(107.5): 19 B-trim: 5 in 1/52
Lambda= 0.106060
statistics sampled from 9585 (9594) to 9585 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.634), E-opt: 0.2 (0.295), width: 16
Scan time: 4.170
The best scores are: opt bits E(32554)
CCDS2482.1 PSMD1 gene_id:5707|Hs108|chr2 ( 953) 6227 965.4 0
CCDS54436.1 PSMD1 gene_id:5707|Hs108|chr2 ( 922) 5220 811.3 0
>>CCDS2482.1 PSMD1 gene_id:5707|Hs108|chr2 (953 aa)
initn: 6227 init1: 6227 opt: 6227 Z-score: 5155.8 bits: 965.4 E(32554): 0
Smith-Waterman score: 6227; 100.0% identity (100.0% similar) in 953 aa overlap (1-953:1-953)
10 20 30 40 50 60
pF1KB8 MITSAAGIISLLDEDEPQLKEFALHKLNAVVNDFWAEISESVDKIEVLYEDEGFRSRQFA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 MITSAAGIISLLDEDEPQLKEFALHKLNAVVNDFWAEISESVDKIEVLYEDEGFRSRQFA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 ALVASKVFYHLGAFEESLNYALGAGDLFNVNDNSEYVETIIAKCIDHYTKQCVENADLPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 ALVASKVFYHLGAFEESLNYALGAGDLFNVNDNSEYVETIIAKCIDHYTKQCVENADLPE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 GEKKPIDQRLEGIVNKMFQRCLDDHKYKQAIGIALETRRLDVFEKTILESNDVPGMLAYS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 GEKKPIDQRLEGIVNKMFQRCLDDHKYKQAIGIALETRRLDVFEKTILESNDVPGMLAYS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 LKLCMSLMQNKQFRNKVLRVLVKIYMNLEKPDFINVCQCLIFLDDPQAVSDILEKLVKED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 LKLCMSLMQNKQFRNKVLRVLVKIYMNLEKPDFINVCQCLIFLDDPQAVSDILEKLVKED
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 NLLMAYQICFDLYESASQQFLSSVIQNLRTVGTPIASVPGSTNTGTVPGSEKDSDSMETE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 NLLMAYQICFDLYESASQQFLSSVIQNLRTVGTPIASVPGSTNTGTVPGSEKDSDSMETE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 EKTSSAFVGKTPEASPEPKDQTLKMIKILSGEMAIELHLQFLIRNNNTDLMILKNTKDAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 EKTSSAFVGKTPEASPEPKDQTLKMIKILSGEMAIELHLQFLIRNNNTDLMILKNTKDAV
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB8 RNSVCHTATVIANSFMHCGTTSDQFLRDNLEWLARATNWAKFTATASLGVIHKGHEKEAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 RNSVCHTATVIANSFMHCGTTSDQFLRDNLEWLARATNWAKFTATASLGVIHKGHEKEAL
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB8 QLMATYLPKDTSPGSAYQEGGGLYALGLIHANHGGDIIDYLLNQLKNASNDIVRHGGSLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 QLMATYLPKDTSPGSAYQEGGGLYALGLIHANHGGDIIDYLLNQLKNASNDIVRHGGSLG
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB8 LGLAAMGTARQDVYDLLKTNLYQDDAVTGEAAGLALGLVMLGSKNAQAIEDMVGYAQETQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 LGLAAMGTARQDVYDLLKTNLYQDDAVTGEAAGLALGLVMLGSKNAQAIEDMVGYAQETQ
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB8 HEKILRGLAVGIALVMYGRMEEADALIESLCRDKDPILRRSGMYTVAMAYCGSGNNKAIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 HEKILRGLAVGIALVMYGRMEEADALIESLCRDKDPILRRSGMYTVAMAYCGSGNNKAIR
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB8 RLLHVAVSDVNDDVRRAAVESLGFILFRTPEQCPSVVSLLSESYNPHVRYGAAMALGICC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 RLLHVAVSDVNDDVRRAAVESLGFILFRTPEQCPSVVSLLSESYNPHVRYGAAMALGICC
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB8 AGTGNKEAINLLEPMTNDPVNYVRQGALIASALIMIQQTEITCPKVNQFRQLYSKVINDK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 AGTGNKEAINLLEPMTNDPVNYVRQGALIASALIMIQQTEITCPKVNQFRQLYSKVINDK
670 680 690 700 710 720
730 740 750 760 770 780
pF1KB8 HDDVMAKFGAILAQGILDAGGHNVTISLQSRTGHTHMPSVVGVLVFTQFWFWFPLSHFLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 HDDVMAKFGAILAQGILDAGGHNVTISLQSRTGHTHMPSVVGVLVFTQFWFWFPLSHFLS
730 740 750 760 770 780
790 800 810 820 830 840
pF1KB8 LAYTPTCVIGLNKDLKMPKVQYKSNCKPSTFAYPAPLEVPKEKEKEKVSTAVLSITAKAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 LAYTPTCVIGLNKDLKMPKVQYKSNCKPSTFAYPAPLEVPKEKEKEKVSTAVLSITAKAK
790 800 810 820 830 840
850 860 870 880 890 900
pF1KB8 KKEKEKEKKEEEKMEVDEAEKKEEKEKKKEPEPNFQLLDNPARVMPAQLKVLTMPETCRY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 KKEKEKEKKEEEKMEVDEAEKKEEKEKKKEPEPNFQLLDNPARVMPAQLKVLTMPETCRY
850 860 870 880 890 900
910 920 930 940 950
pF1KB8 QPFKPLSIGGIIILKDTSEDIEELVEPVAAHGPKIEEEEQEPEPPEPFEYIDD
:::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 QPFKPLSIGGIIILKDTSEDIEELVEPVAAHGPKIEEEEQEPEPPEPFEYIDD
910 920 930 940 950
>>CCDS54436.1 PSMD1 gene_id:5707|Hs108|chr2 (922 aa)
initn: 5436 init1: 5196 opt: 5220 Z-score: 4323.3 bits: 811.3 E(32554): 0
Smith-Waterman score: 5941; 96.7% identity (96.7% similar) in 953 aa overlap (1-953:1-922)
10 20 30 40 50 60
pF1KB8 MITSAAGIISLLDEDEPQLKEFALHKLNAVVNDFWAEISESVDKIEVLYEDEGFRSRQFA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MITSAAGIISLLDEDEPQLKEFALHKLNAVVNDFWAEISESVDKIEVLYEDEGFRSRQFA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 ALVASKVFYHLGAFEESLNYALGAGDLFNVNDNSEYVETIIAKCIDHYTKQCVENADLPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 ALVASKVFYHLGAFEESLNYALGAGDLFNVNDNSEYVETIIAKCIDHYTKQCVENADLPE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 GEKKPIDQRLEGIVNKMFQRCLDDHKYKQAIGIALETRRLDVFEKTILESNDVPGMLAYS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 GEKKPIDQRLEGIVNKMFQRCLDDHKYKQAIGIALETRRLDVFEKTILESNDVPGMLAYS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 LKLCMSLMQNKQFRNKVLRVLVKIYMNLEKPDFINVCQCLIFLDDPQAVSDILEKLVKED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 LKLCMSLMQNKQFRNKVLRVLVKIYMNLEKPDFINVCQCLIFLDDPQAVSDILEKLVKED
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 NLLMAYQICFDLYESASQQFLSSVIQNLRTVGTPIASVPGSTNTGTVPGSEKDSDSMETE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 NLLMAYQICFDLYESASQQFLSSVIQNLRTVGTPIASVPGSTNTGTVPGSEKDSDSMETE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 EKTSSAFVGKTPEASPEPKDQTLKMIKILSGEMAIELHLQFLIRNNNTDLMILKNTKDAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 EKTSSAFVGKTPEASPEPKDQTLKMIKILSGEMAIELHLQFLIRNNNTDLMILKNTKDAV
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB8 RNSVCHTATVIANSFMHCGTTSDQFLRDNLEWLARATNWAKFTATASLGVIHKGHEKEAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 RNSVCHTATVIANSFMHCGTTSDQFLRDNLEWLARATNWAKFTATASLGVIHKGHEKEAL
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB8 QLMATYLPKDTSPGSAYQEGGGLYALGLIHANHGGDIIDYLLNQLKNASNDIVRHGGSLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 QLMATYLPKDTSPGSAYQEGGGLYALGLIHANHGGDIIDYLLNQLKNASNDIVRHGGSLG
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB8 LGLAAMGTARQDVYDLLKTNLYQDDAVTGEAAGLALGLVMLGSKNAQAIEDMVGYAQETQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 LGLAAMGTARQDVYDLLKTNLYQDDAVTGEAAGLALGLVMLGSKNAQAIEDMVGYAQETQ
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB8 HEKILRGLAVGIALVMYGRMEEADALIESLCRDKDPILRRSGMYTVAMAYCGSGNNKAIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 HEKILRGLAVGIALVMYGRMEEADALIESLCRDKDPILRRSGMYTVAMAYCGSGNNKAIR
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB8 RLLHVAVSDVNDDVRRAAVESLGFILFRTPEQCPSVVSLLSESYNPHVRYGAAMALGICC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 RLLHVAVSDVNDDVRRAAVESLGFILFRTPEQCPSVVSLLSESYNPHVRYGAAMALGICC
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB8 AGTGNKEAINLLEPMTNDPVNYVRQGALIASALIMIQQTEITCPKVNQFRQLYSKVINDK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 AGTGNKEAINLLEPMTNDPVNYVRQGALIASALIMIQQTEITCPKVNQFRQLYSKVINDK
670 680 690 700 710 720
730 740 750 760 770 780
pF1KB8 HDDVMAKFGAILAQGILDAGGHNVTISLQSRTGHTHMPSVVGVLVFTQFWFWFPLSHFLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 HDDVMAKFGAILAQGILDAGGHNVTISLQSRTGHTHMPSVVGVLVFTQFWFWFPLSHFLS
730 740 750 760 770 780
790 800 810 820 830 840
pF1KB8 LAYTPTCVIGLNKDLKMPKVQYKSNCKPSTFAYPAPLEVPKEKEKEKVSTAVLSITAKAK
:::::::::::::::: :::::::::::::
CCDS54 LAYTPTCVIGLNKDLK-------------------------------VSTAVLSITAKAK
790 800
850 860 870 880 890 900
pF1KB8 KKEKEKEKKEEEKMEVDEAEKKEEKEKKKEPEPNFQLLDNPARVMPAQLKVLTMPETCRY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 KKEKEKEKKEEEKMEVDEAEKKEEKEKKKEPEPNFQLLDNPARVMPAQLKVLTMPETCRY
810 820 830 840 850 860
910 920 930 940 950
pF1KB8 QPFKPLSIGGIIILKDTSEDIEELVEPVAAHGPKIEEEEQEPEPPEPFEYIDD
:::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 QPFKPLSIGGIIILKDTSEDIEELVEPVAAHGPKIEEEEQEPEPPEPFEYIDD
870 880 890 900 910 920
953 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 17:58:15 2016 done: Sun Nov 6 17:58:15 2016
Total Scan time: 4.170 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]