FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8457, 391 aa
  1>>>pF1KB8457 391 - 391 aa - 391 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 12.5820+/-0.00109; mu= -13.2964+/- 0.066
 mean_var=498.8582+/-102.620, 0's: 0 Z-trim(116.7): 12  B-trim: 179 in 1/53
 Lambda= 0.057423
 statistics sampled from 17395 (17401) to 17395 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.805), E-opt: 0.2 (0.535), width:  16
 Scan time:  3.370

The best scores are:                                      opt bits E(32554)
CCDS13949.1 CDC42EP1 gene_id:11135|Hs108|chr22     ( 391) 2702 237.7 1.4e-62


>>CCDS13949.1 CDC42EP1 gene_id:11135|Hs108|chr22          (391 aa)
 initn: 2702 init1: 2702 opt: 2702  Z-score: 1237.0  bits: 237.7 E(32554): 1.4e-62
Smith-Waterman score: 2702; 100.0% identity (100.0% similar) in 391 aa overlap (1-391:1-391)

               10        20        30        40        50        60
pF1KB8 MPGPQGGRGAATMSLGKLSPVGWVSSSQGKRRLTADMISHPLGDFRHTMHVGRGGDVFGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MPGPQGGRGAATMSLGKLSPVGWVSSSQGKRRLTADMISHPLGDFRHTMHVGRGGDVFGD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 TSFLSNHGGSSGSTHRSPRSFLAKKLQLVRRVGAPPRRMASPPAPSPAPPAISPIIKNAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 TSFLSNHGGSSGSTHRSPRSFLAKKLQLVRRVGAPPRRMASPPAPSPAPPAISPIIKNAI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 SLPQLNQAAYDSLVVGKLSFDSSPTSSTDGHSSYGLDSGFCTISRLPRSEKPHDRDRDGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SLPQLNQAAYDSLVVGKLSFDSSPTSSTDGHSSYGLDSGFCTISRLPRSEKPHDRDRDGS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 FPSEPGLRRSDSLLSFRLDLDLGPSLLSELLGVMSLPEAPAAETPAPAANPPAPTANPTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 FPSEPGLRRSDSLLSFRLDLDLGPSLLSELLGVMSLPEAPAAETPAPAANPPAPTANPTG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 PAANPPATTANPPAPAANPSAPAATPTGPAANPPAPAASSTPHGHCPNGVTAGLGPVAEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 PAANPPATTANPPAPAANPSAPAATPTGPAANPPAPAASSTPHGHCPNGVTAGLGPVAEV
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 KSSPVGGGPRGPAGPALGRHWGAGWDGGHHYPEMDARQERVEVLPQARASWESLDEEWRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 KSSPVGGGPRGPAGPALGRHWGAGWDGGHHYPEMDARQERVEVLPQARASWESLDEEWRA
              310       320       330       340       350       360

              370       380       390 
pF1KB8 PQAGSRTPVPSTVQANTFEFADAEEDDEVKV
       :::::::::::::::::::::::::::::::
CCDS13 PQAGSRTPVPSTVQANTFEFADAEEDDEVKV
              370       380       390 




391 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 13:05:07 2016 done: Fri Nov  4 13:05:07 2016
 Total Scan time:  3.370 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]