FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB8375, 659 aa 1>>>pF1KB8375 659 - 659 aa - 659 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.7240+/-0.000829; mu= 20.0082+/- 0.050 mean_var=113.4965+/-22.944, 0's: 0 Z-trim(111.7): 8 B-trim: 427 in 1/50 Lambda= 0.120388 statistics sampled from 12589 (12595) to 12589 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.734), E-opt: 0.2 (0.387), width: 16 Scan time: 3.560 The best scores are: opt bits E(32554) CCDS12293.1 TRMT1 gene_id:55621|Hs108|chr19 ( 659) 4445 783.0 0 CCDS45997.1 TRMT1 gene_id:55621|Hs108|chr19 ( 630) 2203 393.6 4.4e-109 >>CCDS12293.1 TRMT1 gene_id:55621|Hs108|chr19 (659 aa) initn: 4445 init1: 4445 opt: 4445 Z-score: 4176.1 bits: 783.0 E(32554): 0 Smith-Waterman score: 4445; 100.0% identity (100.0% similar) in 659 aa overlap (1-659:1-659) 10 20 30 40 50 60 pF1KB8 MQGSSLWLSLTFRSARVLSRARFFEWQSPGLPNTAAMENGTGPYGEERPREVQETTVTEG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 MQGSSLWLSLTFRSARVLSRARFFEWQSPGLPNTAAMENGTGPYGEERPREVQETTVTEG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 AAKIAFPSANEVFYNPVQEFNRDLTCAVITEFARIQLGAKGIQIKVPGEKDTQKVVVDLS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 AAKIAFPSANEVFYNPVQEFNRDLTCAVITEFARIQLGAKGIQIKVPGEKDTQKVVVDLS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB8 EQEEEKVELKESENLASGDQPRTAAVGEICEEGLHVLEGLAASGLRSIRFALEVPGLRSV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 EQEEEKVELKESENLASGDQPRTAAVGEICEEGLHVLEGLAASGLRSIRFALEVPGLRSV 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB8 VANDASTRAVDLIRRNVQLNDVAHLVQPSQADARMLMYQHQRVSERFDVIDLDPYGSPAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 VANDASTRAVDLIRRNVQLNDVAHLVQPSQADARMLMYQHQRVSERFDVIDLDPYGSPAT 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB8 FLDAAVQAVSEGGLLCVTCTDMAVLAGNSGETCYSKYGAMALKSRACHEMALRIVLHSLD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 FLDAAVQAVSEGGLLCVTCTDMAVLAGNSGETCYSKYGAMALKSRACHEMALRIVLHSLD 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB8 LRANCYQRFVVPLLSISADFYVRVFVRVFTGQAKVKASASKQALVFQCVGCGAFHLQRLG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 LRANCYQRFVVPLLSISADFYVRVFVRVFTGQAKVKASASKQALVFQCVGCGAFHLQRLG 310 320 330 340 350 360 370 380 390 400 410 420 pF1KB8 KASGVPSGRAKFSAACGPPVTPECEHCGQRHQLGGPMWAEPIHDLDFVGRVLEAVSANPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 KASGVPSGRAKFSAACGPPVTPECEHCGQRHQLGGPMWAEPIHDLDFVGRVLEAVSANPG 370 380 390 400 410 420 430 440 450 460 470 480 pF1KB8 RFHTSERIRGVLSVITEELPDVPLYYTLDQLSSTIHCNTPSLLQLRSALLHADFRVSLSH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 RFHTSERIRGVLSVITEELPDVPLYYTLDQLSSTIHCNTPSLLQLRSALLHADFRVSLSH 430 440 450 460 470 480 490 500 510 520 530 540 pF1KB8 ACKNAVKTDAPASALWDIMRCWEKECPVKRERLSETSPAFRILSVEPRLQANFTIREDAN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 ACKNAVKTDAPASALWDIMRCWEKECPVKRERLSETSPAFRILSVEPRLQANFTIREDAN 490 500 510 520 530 540 550 560 570 580 590 600 pF1KB8 PSSRQRGLKRFQANPEANWGPRPRARPGGKAADEAMEERRRLLQNKRKEPPEDVAQRAAR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 PSSRQRGLKRFQANPEANWGPRPRARPGGKAADEAMEERRRLLQNKRKEPPEDVAQRAAR 550 560 570 580 590 600 610 620 630 640 650 pF1KB8 LKTFPCKRFKEGTCQRGDQCCYSHSPPTPRVSADAAPDCPETSNQTPPGPGAAAGPGID ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 LKTFPCKRFKEGTCQRGDQCCYSHSPPTPRVSADAAPDCPETSNQTPPGPGAAAGPGID 610 620 630 640 650 >>CCDS45997.1 TRMT1 gene_id:55621|Hs108|chr19 (630 aa) initn: 2194 init1: 2194 opt: 2203 Z-score: 2071.9 bits: 393.6 E(32554): 4.4e-109 Smith-Waterman score: 4175; 95.6% identity (95.6% similar) in 659 aa overlap (1-659:1-630) 10 20 30 40 50 60 pF1KB8 MQGSSLWLSLTFRSARVLSRARFFEWQSPGLPNTAAMENGTGPYGEERPREVQETTVTEG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 MQGSSLWLSLTFRSARVLSRARFFEWQSPGLPNTAAMENGTGPYGEERPREVQETTVTEG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 AAKIAFPSANEVFYNPVQEFNRDLTCAVITEFARIQLGAKGIQIKVPGEKDTQKVVVDLS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 AAKIAFPSANEVFYNPVQEFNRDLTCAVITEFARIQLGAKGIQIKVPGEKDTQKVVVDLS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB8 EQEEEKVELKESENLASGDQPRTAAVGEICEEGLHVLEGLAASGLRSIRFALEVPGLRSV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 EQEEEKVELKESENLASGDQPRTAAVGEICEEGLHVLEGLAASGLRSIRFALEVPGLRSV 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB8 VANDASTRAVDLIRRNVQLNDVAHLVQPSQADARMLMYQHQRVSERFDVIDLDPYGSPAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 VANDASTRAVDLIRRNVQLNDVAHLVQPSQADARMLMYQHQRVSERFDVIDLDPYGSPAT 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB8 FLDAAVQAVSEGGLLCVTCTDMAVLAGNSGETCYSKYGAMALKSRACHEMALRIVLHSLD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 FLDAAVQAVSEGGLLCVTCTDMAVLAGNSGETCYSKYGAMALKSRACHEMALRIVLHSLD 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB8 LRANCYQRFVVPLLSISADFYVRVFVRVFTGQAKVKASASKQALVFQCVGCGAFHLQRLG ::::::::::::::::::::::::::::::::::::::: CCDS45 LRANCYQRFVVPLLSISADFYVRVFVRVFTGQAKVKASA--------------------- 310 320 330 370 380 390 400 410 420 pF1KB8 KASGVPSGRAKFSAACGPPVTPECEHCGQRHQLGGPMWAEPIHDLDFVGRVLEAVSANPG :::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 --------RAKFSAACGPPVTPECEHCGQRHQLGGPMWAEPIHDLDFVGRVLEAVSANPG 340 350 360 370 380 390 430 440 450 460 470 480 pF1KB8 RFHTSERIRGVLSVITEELPDVPLYYTLDQLSSTIHCNTPSLLQLRSALLHADFRVSLSH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 RFHTSERIRGVLSVITEELPDVPLYYTLDQLSSTIHCNTPSLLQLRSALLHADFRVSLSH 400 410 420 430 440 450 490 500 510 520 530 540 pF1KB8 ACKNAVKTDAPASALWDIMRCWEKECPVKRERLSETSPAFRILSVEPRLQANFTIREDAN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 ACKNAVKTDAPASALWDIMRCWEKECPVKRERLSETSPAFRILSVEPRLQANFTIREDAN 460 470 480 490 500 510 550 560 570 580 590 600 pF1KB8 PSSRQRGLKRFQANPEANWGPRPRARPGGKAADEAMEERRRLLQNKRKEPPEDVAQRAAR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 PSSRQRGLKRFQANPEANWGPRPRARPGGKAADEAMEERRRLLQNKRKEPPEDVAQRAAR 520 530 540 550 560 570 610 620 630 640 650 pF1KB8 LKTFPCKRFKEGTCQRGDQCCYSHSPPTPRVSADAAPDCPETSNQTPPGPGAAAGPGID ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 LKTFPCKRFKEGTCQRGDQCCYSHSPPTPRVSADAAPDCPETSNQTPPGPGAAAGPGID 580 590 600 610 620 630 659 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 20:47:17 2016 done: Sun Nov 6 20:47:18 2016 Total Scan time: 3.560 Total Display time: 0.010 Function used was FASTA [36.3.4 Apr, 2011]