FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8375, 659 aa
  1>>>pF1KB8375 659 - 659 aa - 659 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7240+/-0.000829; mu= 20.0082+/- 0.050
 mean_var=113.4965+/-22.944, 0's: 0 Z-trim(111.7): 8  B-trim: 427 in 1/50
 Lambda= 0.120388
 statistics sampled from 12589 (12595) to 12589 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.734), E-opt: 0.2 (0.387), width:  16
 Scan time:  3.560

The best scores are:                                      opt bits E(32554)
CCDS12293.1 TRMT1 gene_id:55621|Hs108|chr19        ( 659) 4445 783.0       0
CCDS45997.1 TRMT1 gene_id:55621|Hs108|chr19        ( 630) 2203 393.6 4.4e-109


>>CCDS12293.1 TRMT1 gene_id:55621|Hs108|chr19             (659 aa)
 initn: 4445 init1: 4445 opt: 4445  Z-score: 4176.1  bits: 783.0 E(32554):    0
Smith-Waterman score: 4445; 100.0% identity (100.0% similar) in 659 aa overlap (1-659:1-659)

               10        20        30        40        50        60
pF1KB8 MQGSSLWLSLTFRSARVLSRARFFEWQSPGLPNTAAMENGTGPYGEERPREVQETTVTEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MQGSSLWLSLTFRSARVLSRARFFEWQSPGLPNTAAMENGTGPYGEERPREVQETTVTEG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 AAKIAFPSANEVFYNPVQEFNRDLTCAVITEFARIQLGAKGIQIKVPGEKDTQKVVVDLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 AAKIAFPSANEVFYNPVQEFNRDLTCAVITEFARIQLGAKGIQIKVPGEKDTQKVVVDLS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 EQEEEKVELKESENLASGDQPRTAAVGEICEEGLHVLEGLAASGLRSIRFALEVPGLRSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 EQEEEKVELKESENLASGDQPRTAAVGEICEEGLHVLEGLAASGLRSIRFALEVPGLRSV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 VANDASTRAVDLIRRNVQLNDVAHLVQPSQADARMLMYQHQRVSERFDVIDLDPYGSPAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 VANDASTRAVDLIRRNVQLNDVAHLVQPSQADARMLMYQHQRVSERFDVIDLDPYGSPAT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 FLDAAVQAVSEGGLLCVTCTDMAVLAGNSGETCYSKYGAMALKSRACHEMALRIVLHSLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 FLDAAVQAVSEGGLLCVTCTDMAVLAGNSGETCYSKYGAMALKSRACHEMALRIVLHSLD
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 LRANCYQRFVVPLLSISADFYVRVFVRVFTGQAKVKASASKQALVFQCVGCGAFHLQRLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LRANCYQRFVVPLLSISADFYVRVFVRVFTGQAKVKASASKQALVFQCVGCGAFHLQRLG
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 KASGVPSGRAKFSAACGPPVTPECEHCGQRHQLGGPMWAEPIHDLDFVGRVLEAVSANPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 KASGVPSGRAKFSAACGPPVTPECEHCGQRHQLGGPMWAEPIHDLDFVGRVLEAVSANPG
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB8 RFHTSERIRGVLSVITEELPDVPLYYTLDQLSSTIHCNTPSLLQLRSALLHADFRVSLSH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 RFHTSERIRGVLSVITEELPDVPLYYTLDQLSSTIHCNTPSLLQLRSALLHADFRVSLSH
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB8 ACKNAVKTDAPASALWDIMRCWEKECPVKRERLSETSPAFRILSVEPRLQANFTIREDAN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 ACKNAVKTDAPASALWDIMRCWEKECPVKRERLSETSPAFRILSVEPRLQANFTIREDAN
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB8 PSSRQRGLKRFQANPEANWGPRPRARPGGKAADEAMEERRRLLQNKRKEPPEDVAQRAAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 PSSRQRGLKRFQANPEANWGPRPRARPGGKAADEAMEERRRLLQNKRKEPPEDVAQRAAR
              550       560       570       580       590       600

              610       620       630       640       650         
pF1KB8 LKTFPCKRFKEGTCQRGDQCCYSHSPPTPRVSADAAPDCPETSNQTPPGPGAAAGPGID
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LKTFPCKRFKEGTCQRGDQCCYSHSPPTPRVSADAAPDCPETSNQTPPGPGAAAGPGID
              610       620       630       640       650         

>>CCDS45997.1 TRMT1 gene_id:55621|Hs108|chr19             (630 aa)
 initn: 2194 init1: 2194 opt: 2203  Z-score: 2071.9  bits: 393.6 E(32554): 4.4e-109
Smith-Waterman score: 4175; 95.6% identity (95.6% similar) in 659 aa overlap (1-659:1-630)

               10        20        30        40        50        60
pF1KB8 MQGSSLWLSLTFRSARVLSRARFFEWQSPGLPNTAAMENGTGPYGEERPREVQETTVTEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MQGSSLWLSLTFRSARVLSRARFFEWQSPGLPNTAAMENGTGPYGEERPREVQETTVTEG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 AAKIAFPSANEVFYNPVQEFNRDLTCAVITEFARIQLGAKGIQIKVPGEKDTQKVVVDLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 AAKIAFPSANEVFYNPVQEFNRDLTCAVITEFARIQLGAKGIQIKVPGEKDTQKVVVDLS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 EQEEEKVELKESENLASGDQPRTAAVGEICEEGLHVLEGLAASGLRSIRFALEVPGLRSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 EQEEEKVELKESENLASGDQPRTAAVGEICEEGLHVLEGLAASGLRSIRFALEVPGLRSV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 VANDASTRAVDLIRRNVQLNDVAHLVQPSQADARMLMYQHQRVSERFDVIDLDPYGSPAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 VANDASTRAVDLIRRNVQLNDVAHLVQPSQADARMLMYQHQRVSERFDVIDLDPYGSPAT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 FLDAAVQAVSEGGLLCVTCTDMAVLAGNSGETCYSKYGAMALKSRACHEMALRIVLHSLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 FLDAAVQAVSEGGLLCVTCTDMAVLAGNSGETCYSKYGAMALKSRACHEMALRIVLHSLD
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 LRANCYQRFVVPLLSISADFYVRVFVRVFTGQAKVKASASKQALVFQCVGCGAFHLQRLG
       :::::::::::::::::::::::::::::::::::::::                     
CCDS45 LRANCYQRFVVPLLSISADFYVRVFVRVFTGQAKVKASA---------------------
              310       320       330                              

              370       380       390       400       410       420
pF1KB8 KASGVPSGRAKFSAACGPPVTPECEHCGQRHQLGGPMWAEPIHDLDFVGRVLEAVSANPG
               ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 --------RAKFSAACGPPVTPECEHCGQRHQLGGPMWAEPIHDLDFVGRVLEAVSANPG
             340       350       360       370       380       390 

              430       440       450       460       470       480
pF1KB8 RFHTSERIRGVLSVITEELPDVPLYYTLDQLSSTIHCNTPSLLQLRSALLHADFRVSLSH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 RFHTSERIRGVLSVITEELPDVPLYYTLDQLSSTIHCNTPSLLQLRSALLHADFRVSLSH
             400       410       420       430       440       450 

              490       500       510       520       530       540
pF1KB8 ACKNAVKTDAPASALWDIMRCWEKECPVKRERLSETSPAFRILSVEPRLQANFTIREDAN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 ACKNAVKTDAPASALWDIMRCWEKECPVKRERLSETSPAFRILSVEPRLQANFTIREDAN
             460       470       480       490       500       510 

              550       560       570       580       590       600
pF1KB8 PSSRQRGLKRFQANPEANWGPRPRARPGGKAADEAMEERRRLLQNKRKEPPEDVAQRAAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 PSSRQRGLKRFQANPEANWGPRPRARPGGKAADEAMEERRRLLQNKRKEPPEDVAQRAAR
             520       530       540       550       560       570 

              610       620       630       640       650         
pF1KB8 LKTFPCKRFKEGTCQRGDQCCYSHSPPTPRVSADAAPDCPETSNQTPPGPGAAAGPGID
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LKTFPCKRFKEGTCQRGDQCCYSHSPPTPRVSADAAPDCPETSNQTPPGPGAAAGPGID
             580       590       600       610       620       630




659 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 20:47:17 2016 done: Sun Nov  6 20:47:18 2016
 Total Scan time:  3.560 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]