Result of FASTA (omim) for
pFN21AB8351
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8351, 274 aa
1>>>pF1KB8351 274 - 274 aa - 274 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.6328+/-0.000336; mu= 9.1409+/- 0.021
mean_var=105.2434+/-21.572, 0's: 0 Z-trim(117.3): 45 B-trim: 41 in 1/54
Lambda= 0.125019
statistics sampled from 29157 (29206) to 29157 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.711), E-opt: 0.2 (0.342), width: 16
Scan time: 7.200
The best scores are: opt bits E(85289)
NP_061882 (OMIM: 606277) toll-interacting protein ( 274) 1856 345.0 9.1e-95
NP_001305441 (OMIM: 606277) toll-interacting prote ( 224) 1466 274.6 1.2e-73
NP_001305443 (OMIM: 606277) toll-interacting prote ( 205) 1416 265.5 5.6e-71
NP_001305445 (OMIM: 606277) toll-interacting prote ( 213) 1033 196.5 3.6e-50
XP_016873420 (OMIM: 606277) PREDICTED: toll-intera ( 148) 1006 191.5 7.8e-49
NP_001305444 (OMIM: 606277) toll-interacting prote ( 80) 390 80.2 1.3e-15
>>NP_061882 (OMIM: 606277) toll-interacting protein isof (274 aa)
initn: 1856 init1: 1856 opt: 1856 Z-score: 1822.3 bits: 345.0 E(85289): 9.1e-95
Smith-Waterman score: 1856; 100.0% identity (100.0% similar) in 274 aa overlap (1-274:1-274)
10 20 30 40 50 60
pF1KB8 MATTVSTQRGPVYIGELPQDFLRITPTQQQRQVQLDAQAAQQLQYGGAVGTVGRLNITVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 MATTVSTQRGPVYIGELPQDFLRITPTQQQRQVQLDAQAAQQLQYGGAVGTVGRLNITVV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 QAKLAKNYGMTRMDPYCRLRLGYAVYETPTAHNGAKNPRWNKVIHCTVPPGVDSFYLEIF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 QAKLAKNYGMTRMDPYCRLRLGYAVYETPTAHNGAKNPRWNKVIHCTVPPGVDSFYLEIF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 DERAFSMDDRIAWTHITIPESLRQGKVEDKWYSLSGRQGDDKEGMINLVMSYALLPAAMV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 DERAFSMDDRIAWTHITIPESLRQGKVEDKWYSLSGRQGDDKEGMINLVMSYALLPAAMV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 MPPQPVVLMPTVYQQGVGYVPITGMPAVCSPGMVPVALPPAAVNAQPRCSEEDLKAIQDM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 MPPQPVVLMPTVYQQGVGYVPITGMPAVCSPGMVPVALPPAAVNAQPRCSEEDLKAIQDM
190 200 210 220 230 240
250 260 270
pF1KB8 FPNMDQEVIRSVLEAQRGNKDAAINSLLQMGEEP
::::::::::::::::::::::::::::::::::
NP_061 FPNMDQEVIRSVLEAQRGNKDAAINSLLQMGEEP
250 260 270
>>NP_001305441 (OMIM: 606277) toll-interacting protein i (224 aa)
initn: 1466 init1: 1466 opt: 1466 Z-score: 1443.5 bits: 274.6 E(85289): 1.2e-73
Smith-Waterman score: 1466; 100.0% identity (100.0% similar) in 213 aa overlap (62-274:12-224)
40 50 60 70 80 90
pF1KB8 QVQLDAQAAQQLQYGGAVGTVGRLNITVVQAKLAKNYGMTRMDPYCRLRLGYAVYETPTA
::::::::::::::::::::::::::::::
NP_001 MATTVSTQRGPAKLAKNYGMTRMDPYCRLRLGYAVYETPTA
10 20 30 40
100 110 120 130 140 150
pF1KB8 HNGAKNPRWNKVIHCTVPPGVDSFYLEIFDERAFSMDDRIAWTHITIPESLRQGKVEDKW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HNGAKNPRWNKVIHCTVPPGVDSFYLEIFDERAFSMDDRIAWTHITIPESLRQGKVEDKW
50 60 70 80 90 100
160 170 180 190 200 210
pF1KB8 YSLSGRQGDDKEGMINLVMSYALLPAAMVMPPQPVVLMPTVYQQGVGYVPITGMPAVCSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YSLSGRQGDDKEGMINLVMSYALLPAAMVMPPQPVVLMPTVYQQGVGYVPITGMPAVCSP
110 120 130 140 150 160
220 230 240 250 260 270
pF1KB8 GMVPVALPPAAVNAQPRCSEEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQMG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GMVPVALPPAAVNAQPRCSEEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQMG
170 180 190 200 210 220
pF1KB8 EEP
:::
NP_001 EEP
>>NP_001305443 (OMIM: 606277) toll-interacting protein i (205 aa)
initn: 1416 init1: 1416 opt: 1416 Z-score: 1395.3 bits: 265.5 E(85289): 5.6e-71
Smith-Waterman score: 1416; 100.0% identity (100.0% similar) in 205 aa overlap (70-274:1-205)
40 50 60 70 80 90
pF1KB8 AQQLQYGGAVGTVGRLNITVVQAKLAKNYGMTRMDPYCRLRLGYAVYETPTAHNGAKNPR
::::::::::::::::::::::::::::::
NP_001 MTRMDPYCRLRLGYAVYETPTAHNGAKNPR
10 20 30
100 110 120 130 140 150
pF1KB8 WNKVIHCTVPPGVDSFYLEIFDERAFSMDDRIAWTHITIPESLRQGKVEDKWYSLSGRQG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WNKVIHCTVPPGVDSFYLEIFDERAFSMDDRIAWTHITIPESLRQGKVEDKWYSLSGRQG
40 50 60 70 80 90
160 170 180 190 200 210
pF1KB8 DDKEGMINLVMSYALLPAAMVMPPQPVVLMPTVYQQGVGYVPITGMPAVCSPGMVPVALP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DDKEGMINLVMSYALLPAAMVMPPQPVVLMPTVYQQGVGYVPITGMPAVCSPGMVPVALP
100 110 120 130 140 150
220 230 240 250 260 270
pF1KB8 PAAVNAQPRCSEEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQMGEEP
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PAAVNAQPRCSEEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQMGEEP
160 170 180 190 200
>>NP_001305445 (OMIM: 606277) toll-interacting protein i (213 aa)
initn: 1033 init1: 1033 opt: 1033 Z-score: 1021.7 bits: 196.5 E(85289): 3.6e-50
Smith-Waterman score: 1289; 77.7% identity (77.7% similar) in 274 aa overlap (1-274:1-213)
10 20 30 40 50 60
pF1KB8 MATTVSTQRGPVYIGELPQDFLRITPTQQQRQVQLDAQAAQQLQYGGAVGTVGRLNITVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MATTVSTQRGPVYIGELPQDFLRITPTQQQRQVQLDAQAAQQLQYGGAVGTVGRLNITVV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 QAKLAKNYGMTRMDPYCRLRLGYAVYETPTAHNGAKNPRWNKVIHCTVPPGVDSFYLEIF
:
NP_001 Q-----------------------------------------------------------
130 140 150 160 170 180
pF1KB8 DERAFSMDDRIAWTHITIPESLRQGKVEDKWYSLSGRQGDDKEGMINLVMSYALLPAAMV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 --RAFSMDDRIAWTHITIPESLRQGKVEDKWYSLSGRQGDDKEGMINLVMSYALLPAAMV
70 80 90 100 110
190 200 210 220 230 240
pF1KB8 MPPQPVVLMPTVYQQGVGYVPITGMPAVCSPGMVPVALPPAAVNAQPRCSEEDLKAIQDM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPPQPVVLMPTVYQQGVGYVPITGMPAVCSPGMVPVALPPAAVNAQPRCSEEDLKAIQDM
120 130 140 150 160 170
250 260 270
pF1KB8 FPNMDQEVIRSVLEAQRGNKDAAINSLLQMGEEP
::::::::::::::::::::::::::::::::::
NP_001 FPNMDQEVIRSVLEAQRGNKDAAINSLLQMGEEP
180 190 200 210
>>XP_016873420 (OMIM: 606277) PREDICTED: toll-interactin (148 aa)
initn: 1006 init1: 1006 opt: 1006 Z-score: 997.8 bits: 191.5 E(85289): 7.8e-49
Smith-Waterman score: 1006; 100.0% identity (100.0% similar) in 148 aa overlap (127-274:1-148)
100 110 120 130 140 150
pF1KB8 NPRWNKVIHCTVPPGVDSFYLEIFDERAFSMDDRIAWTHITIPESLRQGKVEDKWYSLSG
::::::::::::::::::::::::::::::
XP_016 MDDRIAWTHITIPESLRQGKVEDKWYSLSG
10 20 30
160 170 180 190 200 210
pF1KB8 RQGDDKEGMINLVMSYALLPAAMVMPPQPVVLMPTVYQQGVGYVPITGMPAVCSPGMVPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RQGDDKEGMINLVMSYALLPAAMVMPPQPVVLMPTVYQQGVGYVPITGMPAVCSPGMVPV
40 50 60 70 80 90
220 230 240 250 260 270
pF1KB8 ALPPAAVNAQPRCSEEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQMGEEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ALPPAAVNAQPRCSEEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQMGEEP
100 110 120 130 140
>>NP_001305444 (OMIM: 606277) toll-interacting protein i (80 aa)
initn: 390 init1: 390 opt: 390 Z-score: 401.3 bits: 80.2 E(85289): 1.3e-15
Smith-Waterman score: 390; 100.0% identity (100.0% similar) in 61 aa overlap (1-61:1-61)
10 20 30 40 50 60
pF1KB8 MATTVSTQRGPVYIGELPQDFLRITPTQQQRQVQLDAQAAQQLQYGGAVGTVGRLNITVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MATTVSTQRGPVYIGELPQDFLRITPTQQQRQVQLDAQAAQQLQYGGAVGTVGRLNITVV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 QAKLAKNYGMTRMDPYCRLRLGYAVYETPTAHNGAKNPRWNKVIHCTVPPGVDSFYLEIF
:
NP_001 QGCPLSVAPAWCPWPCPRPP
70 80
274 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 03:35:51 2016 done: Mon Nov 7 03:35:52 2016
Total Scan time: 7.200 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]